# Assembly name: Dog10K_Boxer_Tasha # Organism name: Canis lupus familiaris (dog) # Infraspecific name: breed=boxer # Isolate: Tasha # Sex: female # Taxid: 9615 # BioSample: SAMN02953603 # BioProject: PRJNA13179 # Submitter: Dog Genome Sequencing Consortium # Date: 2020-10-06 # Synonyms: canFam6 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: AAEX04 # Assembly method: Canu v. 1.8 # Expected final version: yes # Genome coverage: 100.0x # Sequencing technology: PacBio Sequel # GenBank assembly accession: GCA_000002285.4 # RefSeq assembly accession: GCF_000002285.5 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000000145.4 GCF_000000145.4 Primary Assembly ## GCA_013123455.1 GCF_000184225.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 1 assembled-molecule 1 Chromosome CM000001.4 = NC_006583.4 Primary Assembly 122014068 chr1 2 assembled-molecule 2 Chromosome CM000002.4 = NC_006584.4 Primary Assembly 82037489 chr2 3 assembled-molecule 3 Chromosome CM000003.4 = NC_006585.4 Primary Assembly 94329250 chr3 4 assembled-molecule 4 Chromosome CM000004.4 = NC_006586.4 Primary Assembly 87912527 chr4 5 assembled-molecule 5 Chromosome CM000005.4 = NC_006587.4 Primary Assembly 88913986 chr5 6 assembled-molecule 6 Chromosome CM000006.4 = NC_006588.4 Primary Assembly 80213190 chr6 7 assembled-molecule 7 Chromosome CM000007.4 = NC_006589.4 Primary Assembly 80419774 chr7 8 assembled-molecule 8 Chromosome CM000008.4 = NC_006590.4 Primary Assembly 73585679 chr8 9 assembled-molecule 9 Chromosome CM000009.4 = NC_006591.4 Primary Assembly 60315500 chr9 10 assembled-molecule 10 Chromosome CM000010.4 = NC_006592.4 Primary Assembly 69219345 chr10 11 assembled-molecule 11 Chromosome CM000011.4 = NC_006593.4 Primary Assembly 72832428 chr11 12 assembled-molecule 12 Chromosome CM000012.4 = NC_006594.4 Primary Assembly 72300020 chr12 13 assembled-molecule 13 Chromosome CM000013.4 = NC_006595.4 Primary Assembly 62895387 chr13 14 assembled-molecule 14 Chromosome CM000014.4 = NC_006596.4 Primary Assembly 60430354 chr14 15 assembled-molecule 15 Chromosome CM000015.4 = NC_006597.4 Primary Assembly 64389122 chr15 16 assembled-molecule 16 Chromosome CM000016.4 = NC_006598.4 Primary Assembly 54556944 chr16 17 assembled-molecule 17 Chromosome CM000017.4 = NC_006599.4 Primary Assembly 63738581 chr17 18 assembled-molecule 18 Chromosome CM000018.4 = NC_006600.4 Primary Assembly 54357284 chr18 19 assembled-molecule 19 Chromosome CM000019.4 = NC_006601.4 Primary Assembly 52989165 chr19 20 assembled-molecule 20 Chromosome CM000020.4 = NC_006602.4 Primary Assembly 57984708 chr20 21 assembled-molecule 21 Chromosome CM000021.4 = NC_006603.4 Primary Assembly 50232922 chr21 22 assembled-molecule 22 Chromosome CM000022.4 = NC_006604.4 Primary Assembly 61822301 chr22 23 assembled-molecule 23 Chromosome CM000023.4 = NC_006605.4 Primary Assembly 52413914 chr23 24 assembled-molecule 24 Chromosome CM000024.4 = NC_006606.4 Primary Assembly 46832179 chr24 25 assembled-molecule 25 Chromosome CM000025.4 = NC_006607.4 Primary Assembly 51908704 chr25 26 assembled-molecule 26 Chromosome CM000026.4 = NC_006608.4 Primary Assembly 38725074 chr26 27 assembled-molecule 27 Chromosome CM000027.5 = NC_006609.4 Primary Assembly 46280981 chr27 28 assembled-molecule 28 Chromosome CM000028.4 = NC_006610.4 Primary Assembly 41264955 chr28 29 assembled-molecule 29 Chromosome CM000029.4 = NC_006611.4 Primary Assembly 40893792 chr29 30 assembled-molecule 30 Chromosome CM000030.4 = NC_006612.4 Primary Assembly 40067686 chr30 31 assembled-molecule 31 Chromosome CM000031.4 = NC_006613.4 Primary Assembly 39086971 chr31 32 assembled-molecule 32 Chromosome CM000032.5 = NC_006614.4 Primary Assembly 41857359 chr32 33 assembled-molecule 33 Chromosome CM000033.4 = NC_006615.4 Primary Assembly 31422675 chr33 34 assembled-molecule 34 Chromosome CM000034.4 = NC_006616.4 Primary Assembly 51113282 chr34 35 assembled-molecule 35 Chromosome CM000035.4 = NC_006617.4 Primary Assembly 26040529 chr35 36 assembled-molecule 36 Chromosome CM000036.4 = NC_006618.4 Primary Assembly 30723464 chr36 37 assembled-molecule 37 Chromosome CM000037.4 = NC_006619.4 Primary Assembly 31754289 chr37 38 assembled-molecule 38 Chromosome CM000038.4 = NC_006620.4 Primary Assembly 23973277 chr38 X assembled-molecule X Chromosome CM000039.4 = NC_006621.4 Primary Assembly 108808365 chrX chrUn6 unplaced-scaffold na na AAEX04000039.1 = NW_023329752.1 Primary Assembly 551 chrUn_NW_023329752v1 chrUn10 unplaced-scaffold na na AAEX04000040.1 = NW_023329667.1 Primary Assembly 7753 chrUn_NW_023329667v1 chrUn19 unplaced-scaffold na na AAEX04000041.1 = NW_023329727.1 Primary Assembly 11202 chrUn_NW_023329727v1 chrUn24 unplaced-scaffold na na AAEX04000042.1 = NW_023329743.1 Primary Assembly 3970 chrUn_NW_023329743v1 chrUn28 unplaced-scaffold na na AAEX04000043.1 = NW_023329744.1 Primary Assembly 6022 chrUn_NW_023329744v1 chrUn32 unplaced-scaffold na na AAEX04000044.1 = NW_023329745.1 Primary Assembly 7625 chrUn_NW_023329745v1 chrUn40 unplaced-scaffold na na AAEX04000045.1 = NW_023329746.1 Primary Assembly 975 chrUn_NW_023329746v1 chrUn42 unplaced-scaffold na na AAEX04000046.1 = NW_023329747.1 Primary Assembly 5521 chrUn_NW_023329747v1 chrUn43 unplaced-scaffold na na AAEX04000047.1 = NW_023329748.1 Primary Assembly 761 chrUn_NW_023329748v1 chrUn56 unplaced-scaffold na na AAEX04000048.1 = NW_023329749.1 Primary Assembly 700 chrUn_NW_023329749v1 chrUn57 unplaced-scaffold na na AAEX04000049.1 = NW_023329750.1 Primary Assembly 671 chrUn_NW_023329750v1 chrUn59 unplaced-scaffold na na AAEX04000050.1 = NW_023329751.1 Primary Assembly 732 chrUn_NW_023329751v1 chrUn62 unplaced-scaffold na na AAEX04000051.1 = NW_023329753.1 Primary Assembly 610 chrUn_NW_023329753v1 chrUn67 unplaced-scaffold na na AAEX04000052.1 = NW_023329754.1 Primary Assembly 3758 chrUn_NW_023329754v1 chrUn70 unplaced-scaffold na na AAEX04000053.1 = NW_023329755.1 Primary Assembly 156523 chrUn_NW_023329755v1 chrUn73 unplaced-scaffold na na AAEX04000054.1 = NW_023329756.1 Primary Assembly 596 chrUn_NW_023329756v1 chrUn74 unplaced-scaffold na na AAEX04000055.1 = NW_023329757.1 Primary Assembly 879 chrUn_NW_023329757v1 chrUn75 unplaced-scaffold na na AAEX04000056.1 = NW_023329758.1 Primary Assembly 6499 chrUn_NW_023329758v1 chrUn76 unplaced-scaffold na na AAEX04000057.1 = NW_023329759.1 Primary Assembly 11993 chrUn_NW_023329759v1 chrUn79 unplaced-scaffold na na AAEX04000058.1 = NW_023329760.1 Primary Assembly 34643 chrUn_NW_023329760v1 chrUn80 unplaced-scaffold na na AAEX04000059.1 = NW_023329761.1 Primary Assembly 8153 chrUn_NW_023329761v1 chrUn81 unplaced-scaffold na na AAEX04000060.1 = NW_023329762.1 Primary Assembly 1061 chrUn_NW_023329762v1 chrUn86 unplaced-scaffold na na AAEX04000061.1 = NW_023329763.1 Primary Assembly 19377 chrUn_NW_023329763v1 chrUn87 unplaced-scaffold na na AAEX04000062.1 = NW_023329764.1 Primary Assembly 4512 chrUn_NW_023329764v1 chrUn88 unplaced-scaffold na na AAEX04000063.1 = NW_023329765.1 Primary Assembly 5698 chrUn_NW_023329765v1 chrUn89 unplaced-scaffold na na AAEX04000064.1 = NW_023329766.1 Primary Assembly 57845 chrUn_NW_023329766v1 chrUn92 unplaced-scaffold na na AAEX04000065.1 = NW_023329767.1 Primary Assembly 27427 chrUn_NW_023329767v1 chrUn94 unplaced-scaffold na na AAEX04000066.1 = NW_023329768.1 Primary Assembly 2548 chrUn_NW_023329768v1 chrUn95 unplaced-scaffold na na AAEX04000067.1 = NW_023329769.1 Primary Assembly 15679 chrUn_NW_023329769v1 chrUn96 unplaced-scaffold na na AAEX04000068.1 = NW_023329770.1 Primary Assembly 9700 chrUn_NW_023329770v1 chrUn97 unplaced-scaffold na na AAEX04000069.1 = NW_023329771.1 Primary Assembly 570 chrUn_NW_023329771v1 chrUn98 unplaced-scaffold na na AAEX04000070.1 = NW_023329772.1 Primary Assembly 2751 chrUn_NW_023329772v1 chrUn99 unplaced-scaffold na na AAEX04000071.1 = NW_023329773.1 Primary Assembly 95878 chrUn_NW_023329773v1 chrUn100 unplaced-scaffold na na AAEX04000072.1 = NW_023329668.1 Primary Assembly 93402 chrUn_NW_023329668v1 chrUn101 unplaced-scaffold na na AAEX04000073.1 = NW_023329669.1 Primary Assembly 985 chrUn_NW_023329669v1 chrUn103 unplaced-scaffold na na AAEX04000074.1 = NW_023329670.1 Primary Assembly 57590 chrUn_NW_023329670v1 chrUn105 unplaced-scaffold na na AAEX04000075.1 = NW_023329671.1 Primary Assembly 22211 chrUn_NW_023329671v1 chrUn106 unplaced-scaffold na na AAEX04000076.1 = NW_023329672.1 Primary Assembly 257600 chrUn_NW_023329672v1 chrUn107 unplaced-scaffold na na AAEX04000077.1 = NW_023329673.1 Primary Assembly 1655 chrUn_NW_023329673v1 chrUn108 unplaced-scaffold na na AAEX04000078.1 = NW_023329674.1 Primary Assembly 978 chrUn_NW_023329674v1 chrUn111 unplaced-scaffold na na AAEX04000079.1 = NW_023329675.1 Primary Assembly 6273 chrUn_NW_023329675v1 chrUn112 unplaced-scaffold na na AAEX04000080.1 = NW_023329676.1 Primary Assembly 4928 chrUn_NW_023329676v1 chrUn113 unplaced-scaffold na na AAEX04000081.1 = NW_023329677.1 Primary Assembly 3309 chrUn_NW_023329677v1 chrUn114 unplaced-scaffold na na AAEX04000082.1 = NW_023329678.1 Primary Assembly 702 chrUn_NW_023329678v1 chrUn118 unplaced-scaffold na na AAEX04000083.1 = NW_023329679.1 Primary Assembly 954 chrUn_NW_023329679v1 chrUn120 unplaced-scaffold na na AAEX04000084.1 = NW_023329680.1 Primary Assembly 784 chrUn_NW_023329680v1 chrUn121 unplaced-scaffold na na AAEX04000085.1 = NW_023329681.1 Primary Assembly 1287 chrUn_NW_023329681v1 chrUn122 unplaced-scaffold na na AAEX04000086.1 = NW_023329682.1 Primary Assembly 76816 chrUn_NW_023329682v1 chrUn123 unplaced-scaffold na na AAEX04000087.1 = NW_023329683.1 Primary Assembly 119162 chrUn_NW_023329683v1 chrUn124 unplaced-scaffold na na AAEX04000088.1 = NW_023329684.1 Primary Assembly 6348 chrUn_NW_023329684v1 chrUn125 unplaced-scaffold na na AAEX04000089.1 = NW_023329685.1 Primary Assembly 962 chrUn_NW_023329685v1 chrUn126 unplaced-scaffold na na AAEX04000090.1 = NW_023329686.1 Primary Assembly 956 chrUn_NW_023329686v1 chrUn127 unplaced-scaffold na na AAEX04000091.1 = NW_023329687.1 Primary Assembly 6544 chrUn_NW_023329687v1 chrUn128 unplaced-scaffold na na AAEX04000092.1 = NW_023329688.1 Primary Assembly 4275 chrUn_NW_023329688v1 chrUn130 unplaced-scaffold na na AAEX04000093.1 = NW_023329689.1 Primary Assembly 977 chrUn_NW_023329689v1 chrUn132 unplaced-scaffold na na AAEX04000094.1 = NW_023329690.1 Primary Assembly 5182 chrUn_NW_023329690v1 chrUn133 unplaced-scaffold na na AAEX04000095.1 = NW_023329691.1 Primary Assembly 3195 chrUn_NW_023329691v1 chrUn135 unplaced-scaffold na na AAEX04000096.1 = NW_023329692.1 Primary Assembly 811 chrUn_NW_023329692v1 chrUn136 unplaced-scaffold na na AAEX04000097.1 = NW_023329693.1 Primary Assembly 4027 chrUn_NW_023329693v1 chrUn137 unplaced-scaffold na na AAEX04000098.1 = NW_023329694.1 Primary Assembly 6885 chrUn_NW_023329694v1 chrUn141 unplaced-scaffold na na AAEX04000099.1 = NW_023329695.1 Primary Assembly 5227 chrUn_NW_023329695v1 chrUn142 unplaced-scaffold na na AAEX04000100.1 = NW_023329696.1 Primary Assembly 1090 chrUn_NW_023329696v1 chrUn145 unplaced-scaffold na na AAEX04000101.1 = NW_023329697.1 Primary Assembly 583 chrUn_NW_023329697v1 chrUn148 unplaced-scaffold na na AAEX04000102.1 = NW_023329698.1 Primary Assembly 975 chrUn_NW_023329698v1 chrUn149 unplaced-scaffold na na AAEX04000103.1 = NW_023329699.1 Primary Assembly 58962 chrUn_NW_023329699v1 chrUn152 unplaced-scaffold na na AAEX04000104.1 = NW_023329700.1 Primary Assembly 4712 chrUn_NW_023329700v1 chrUn153 unplaced-scaffold na na AAEX04000105.1 = NW_023329701.1 Primary Assembly 324414 chrUn_NW_023329701v1 chrUn154 unplaced-scaffold na na AAEX04000106.1 = NW_023329702.1 Primary Assembly 16658 chrUn_NW_023329702v1 chrUn155 unplaced-scaffold na na AAEX04000107.1 = NW_023329703.1 Primary Assembly 52552 chrUn_NW_023329703v1 chrUn156 unplaced-scaffold na na AAEX04000108.1 = NW_023329704.1 Primary Assembly 4211 chrUn_NW_023329704v1 chrUn157 unplaced-scaffold na na AAEX04000109.1 = NW_023329705.1 Primary Assembly 10187 chrUn_NW_023329705v1 chrUn160 unplaced-scaffold na na AAEX04000110.1 = NW_023329706.1 Primary Assembly 729 chrUn_NW_023329706v1 chrUn161 unplaced-scaffold na na AAEX04000111.1 = NW_023329707.1 Primary Assembly 6860 chrUn_NW_023329707v1 chrUn162 unplaced-scaffold na na AAEX04000112.1 = NW_023329708.1 Primary Assembly 7637 chrUn_NW_023329708v1 chrUn163 unplaced-scaffold na na AAEX04000113.1 = NW_023329709.1 Primary Assembly 1317 chrUn_NW_023329709v1 chrUn167 unplaced-scaffold na na AAEX04000114.1 = NW_023329710.1 Primary Assembly 5957 chrUn_NW_023329710v1 chrUn168 unplaced-scaffold na na AAEX04000115.1 = NW_023329711.1 Primary Assembly 940 chrUn_NW_023329711v1 chrUn169 unplaced-scaffold na na AAEX04000116.1 = NW_023329712.1 Primary Assembly 3235 chrUn_NW_023329712v1 chrUn171 unplaced-scaffold na na AAEX04000117.1 = NW_023329713.1 Primary Assembly 1133 chrUn_NW_023329713v1 chrUn172 unplaced-scaffold na na AAEX04000118.1 = NW_023329714.1 Primary Assembly 746 chrUn_NW_023329714v1 chrUn173 unplaced-scaffold na na AAEX04000119.1 = NW_023329715.1 Primary Assembly 2851 chrUn_NW_023329715v1 chrUn174 unplaced-scaffold na na AAEX04000120.1 = NW_023329716.1 Primary Assembly 669 chrUn_NW_023329716v1 chrUn177 unplaced-scaffold na na AAEX04000121.1 = NW_023329717.1 Primary Assembly 1932 chrUn_NW_023329717v1 chrUn178 unplaced-scaffold na na AAEX04000122.1 = NW_023329718.1 Primary Assembly 955 chrUn_NW_023329718v1 chrUn179 unplaced-scaffold na na AAEX04000123.1 = NW_023329719.1 Primary Assembly 853 chrUn_NW_023329719v1 chrUn180 unplaced-scaffold na na AAEX04000124.1 = NW_023329720.1 Primary Assembly 72059 chrUn_NW_023329720v1 chrUn181 unplaced-scaffold na na AAEX04000125.1 = NW_023329721.1 Primary Assembly 968 chrUn_NW_023329721v1 chrUn182 unplaced-scaffold na na AAEX04000126.1 = NW_023329722.1 Primary Assembly 7024 chrUn_NW_023329722v1 chrUn183 unplaced-scaffold na na AAEX04000127.1 = NW_023329723.1 Primary Assembly 5203 chrUn_NW_023329723v1 chrUn184 unplaced-scaffold na na AAEX04000128.1 = NW_023329724.1 Primary Assembly 558 chrUn_NW_023329724v1 chrUn185 unplaced-scaffold na na AAEX04000129.1 = NW_023329725.1 Primary Assembly 5195 chrUn_NW_023329725v1 chrUn189 unplaced-scaffold na na AAEX04000130.1 = NW_023329726.1 Primary Assembly 3889 chrUn_NW_023329726v1 chrUn190 unplaced-scaffold na na AAEX04000131.1 = NW_023329728.1 Primary Assembly 845 chrUn_NW_023329728v1 chrUn193 unplaced-scaffold na na AAEX04000132.1 = NW_023329729.1 Primary Assembly 9760 chrUn_NW_023329729v1 chrUn194 unplaced-scaffold na na AAEX04000133.1 = NW_023329730.1 Primary Assembly 6522 chrUn_NW_023329730v1 chrUn197 unplaced-scaffold na na AAEX04000134.1 = NW_023329731.1 Primary Assembly 9306 chrUn_NW_023329731v1 chrUn199 unplaced-scaffold na na AAEX04000135.1 = NW_023329732.1 Primary Assembly 1382 chrUn_NW_023329732v1 chrUn200 unplaced-scaffold na na AAEX04000136.1 = NW_023329733.1 Primary Assembly 9943 chrUn_NW_023329733v1 chrUn201 unplaced-scaffold na na AAEX04000137.1 = NW_023329734.1 Primary Assembly 14199 chrUn_NW_023329734v1 chrUn203 unplaced-scaffold na na AAEX04000138.1 = NW_023329735.1 Primary Assembly 64905 chrUn_NW_023329735v1 chrUn204 unplaced-scaffold na na AAEX04000139.1 = NW_023329736.1 Primary Assembly 45116 chrUn_NW_023329736v1 chrUn205 unplaced-scaffold na na AAEX04000140.1 = NW_023329737.1 Primary Assembly 8889 chrUn_NW_023329737v1 chrUn206 unplaced-scaffold na na AAEX04000141.1 = NW_023329738.1 Primary Assembly 997 chrUn_NW_023329738v1 chrUn207 unplaced-scaffold na na AAEX04000142.1 = NW_023329739.1 Primary Assembly 74212 chrUn_NW_023329739v1 chrUn209 unplaced-scaffold na na AAEX04000143.1 = NW_023329740.1 Primary Assembly 4456 chrUn_NW_023329740v1 chrUn210 unplaced-scaffold na na AAEX04000144.1 = NW_023329741.1 Primary Assembly 5574 chrUn_NW_023329741v1 chrUn211 unplaced-scaffold na na AAEX04000145.1 = NW_023329742.1 Primary Assembly 59583 chrUn_NW_023329742v1 MT assembled-molecule MT Mitochondrion CM023446.1 <> na non-nuclear 16735 na MT assembled-molecule MT Mitochondrion na <> NC_002008.4 non-nuclear 16727 chrM