# Assembly name: GRCm38.p6 # Description: Genome Reference Consortium Mouse Build 38 patch release 6 (GRCm38.p6) # Organism name: Mus musculus (house mouse) # Infraspecific name: strain=C57BL/6J # Taxid: 10090 # BioProject: PRJNA20689 # Submitter: Genome Reference Consortium # Date: 2017-09-15 # Assembly type: haploid-with-alt-loci # Release type: patch # Assembly level: Chromosome # Genome representation: full # GenBank assembly accession: GCA_000001635.8 # RefSeq assembly accession: GCF_000001635.26 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000000055.2 GCF_000000055.19 Primary Assembly (C57BL/6J) ## GCA_000291555.6 GCF_000291555.6 PATCHES ## GCA_000000495.1 GCF_000000495.3 129P2/OlaHsd ## GCA_000001665.1 GCF_000001665.3 129S1/SvImJ ## GCA_000001675.1 GCF_000001675.3 129S2/SvPas ## GCA_000000395.2 GCF_000000395.5 129S6/SvEvTac ## GCA_000237955.1 GCF_000237955.1 129X1/SvJ ## GCA_000000325.1 GCF_000000325.5 A/J ## GCA_000000425.1 GCF_000000425.1 AKR/J ## GCA_000000335.2 GCF_000000335.9 BALB/c ## GCA_000000465.2 GCF_000000465.4 CAST/Ei ## GCA_000001715.1 GCF_000001715.3 NOD/MrkTac ## GCA_000001705.1 GCF_000001705.1 NOD/ShiLtJ ## GCA_000001725.1 GCF_000001725.3 RIII ## GCA_000000385.2 GCF_000000385.11 UNKNOWN ## GCA_000001685.1 GCF_000001685.3 129S7/SvEvBrd-Hprt-b-m2 ## GCA_000004175.1 GCF_000004175.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 1 assembled-molecule 1 Chromosome CM000994.2 = NC_000067.6 C57BL/6J 195471971 chr1 2 assembled-molecule 2 Chromosome CM000995.2 = NC_000068.7 C57BL/6J 182113224 chr2 3 assembled-molecule 3 Chromosome CM000996.2 = NC_000069.6 C57BL/6J 160039680 chr3 4 assembled-molecule 4 Chromosome CM000997.2 = NC_000070.6 C57BL/6J 156508116 chr4 5 assembled-molecule 5 Chromosome CM000998.2 = NC_000071.6 C57BL/6J 151834684 chr5 6 assembled-molecule 6 Chromosome CM000999.2 = NC_000072.6 C57BL/6J 149736546 chr6 7 assembled-molecule 7 Chromosome CM001000.2 = NC_000073.6 C57BL/6J 145441459 chr7 8 assembled-molecule 8 Chromosome CM001001.2 = NC_000074.6 C57BL/6J 129401213 chr8 9 assembled-molecule 9 Chromosome CM001002.2 = NC_000075.6 C57BL/6J 124595110 chr9 10 assembled-molecule 10 Chromosome CM001003.2 = NC_000076.6 C57BL/6J 130694993 chr10 11 assembled-molecule 11 Chromosome CM001004.2 = NC_000077.6 C57BL/6J 122082543 chr11 12 assembled-molecule 12 Chromosome CM001005.2 = NC_000078.6 C57BL/6J 120129022 chr12 13 assembled-molecule 13 Chromosome CM001006.2 = NC_000079.6 C57BL/6J 120421639 chr13 14 assembled-molecule 14 Chromosome CM001007.2 = NC_000080.6 C57BL/6J 124902244 chr14 15 assembled-molecule 15 Chromosome CM001008.2 = NC_000081.6 C57BL/6J 104043685 chr15 16 assembled-molecule 16 Chromosome CM001009.2 = NC_000082.6 C57BL/6J 98207768 chr16 17 assembled-molecule 17 Chromosome CM001010.2 = NC_000083.6 C57BL/6J 94987271 chr17 18 assembled-molecule 18 Chromosome CM001011.2 = NC_000084.6 C57BL/6J 90702639 chr18 19 assembled-molecule 19 Chromosome CM001012.2 = NC_000085.6 C57BL/6J 61431566 chr19 X assembled-molecule X Chromosome CM001013.2 = NC_000086.7 C57BL/6J 171031299 chrX Y assembled-molecule Y Chromosome CM001014.2 = NC_000087.7 C57BL/6J 91744698 chrY MMCHR1_RANDOM_CTG1 unlocalized-scaffold 1 Chromosome GL456210.1 = NT_166280.1 C57BL/6J 169725 chr1_GL456210_random MMCHR1_RANDOM_CTG2 unlocalized-scaffold 1 Chromosome GL456211.1 = NT_166281.1 C57BL/6J 241735 chr1_GL456211_random MMCHR1_RANDOM_CTG3 unlocalized-scaffold 1 Chromosome GL456212.1 = NT_166282.1 C57BL/6J 153618 chr1_GL456212_random MMCHR1_RANDOM_CTG4 unlocalized-scaffold 1 Chromosome GL456213.1 = NT_166283.1 C57BL/6J 39340 chr1_GL456213_random MMCHR1_RANDOM_CTG5 unlocalized-scaffold 1 Chromosome GL456221.1 = NT_162750.1 C57BL/6J 206961 chr1_GL456221_random MMCHR4UN_CTG1 unlocalized-scaffold 4 Chromosome GL456216.1 = NT_166291.1 C57BL/6J 66673 chr4_GL456216_random MMCHR4UN_CTG3 unlocalized-scaffold 4 Chromosome GL456350.1 = NT_166434.1 C57BL/6J 227966 chr4_GL456350_random MMCHR4UN_CTG2 unlocalized-scaffold 4 Chromosome JH584292.1 = NT_187052.1 C57BL/6J 14945 chr4_JH584292_random MMCHR4UN_CTG4 unlocalized-scaffold 4 Chromosome JH584293.1 = NT_187053.1 C57BL/6J 207968 chr4_JH584293_random MMCHR4UN_CTG5 unlocalized-scaffold 4 Chromosome JH584294.1 = NT_187054.1 C57BL/6J 191905 chr4_JH584294_random MMCHR4UN_CTG6 unlocalized-scaffold 4 Chromosome JH584295.1 = NT_187055.1 C57BL/6J 1976 chr4_JH584295_random MMCHR5_RANDOM_CTG4 unlocalized-scaffold 5 Chromosome GL456354.1 = NT_166438.1 C57BL/6J 195993 chr5_GL456354_random MMCHR5_RANDOM_CTG1 unlocalized-scaffold 5 Chromosome JH584296.1 = NT_187056.1 C57BL/6J 199368 chr5_JH584296_random MMCHR5_RANDOM_CTG2 unlocalized-scaffold 5 Chromosome JH584297.1 = NT_187057.1 C57BL/6J 205776 chr5_JH584297_random MMCHR5_RANDOM_CTG3 unlocalized-scaffold 5 Chromosome JH584298.1 = NT_187058.1 C57BL/6J 184189 chr5_JH584298_random MMCHR5_RANDOM_CTG5 unlocalized-scaffold 5 Chromosome JH584299.1 = NT_187059.1 C57BL/6J 953012 chr5_JH584299_random MMCHR7_RANDOM_CTG1 unlocalized-scaffold 7 Chromosome GL456219.1 = NT_166307.1 C57BL/6J 175968 chr7_GL456219_random MMCHRX_RANDOM_CTG2 unlocalized-scaffold X Chromosome GL456233.1 = NT_165789.2 C57BL/6J 336933 chrX_GL456233_random MMCHRY_CTGU1 unlocalized-scaffold Y Chromosome JH584300.1 = NT_187060.1 C57BL/6J 182347 chrY_JH584300_random MMCHRY_CTGU2 unlocalized-scaffold Y Chromosome JH584301.1 = NT_187061.1 C57BL/6J 259875 chrY_JH584301_random MMCHRY_CTGU3 unlocalized-scaffold Y Chromosome JH584302.1 = NT_187062.1 C57BL/6J 155838 chrY_JH584302_random MMCHRY_CTGU4 unlocalized-scaffold Y Chromosome JH584303.1 = NT_187063.1 C57BL/6J 158099 chrY_JH584303_random MSCHRUN_CTG1 unplaced-scaffold na na GL456239.1 = NT_166338.1 C57BL/6J 40056 chrUn_GL456239 MSCHRUN_CTG13 unplaced-scaffold na na GL456359.1 = NT_166443.1 C57BL/6J 22974 chrUn_GL456359 MSCHRUN_CTG14 unplaced-scaffold na na GL456360.1 = NT_166444.1 C57BL/6J 31704 chrUn_GL456360 MSCHRUN_CTG21 unplaced-scaffold na na GL456366.1 = NT_166450.1 C57BL/6J 47073 chrUn_GL456366 MSCHRUN_CTG2 unplaced-scaffold na na GL456367.1 = NT_166451.1 C57BL/6J 42057 chrUn_GL456367 MSCHRUN_CTG22 unplaced-scaffold na na GL456368.1 = NT_166452.1 C57BL/6J 20208 chrUn_GL456368 MSCHRUN_CTG19 unplaced-scaffold na na GL456370.1 = NT_166454.1 C57BL/6J 26764 chrUn_GL456370 MSCHRUN_CTG16 unplaced-scaffold na na GL456372.1 = NT_166456.1 C57BL/6J 28664 chrUn_GL456372 MSCHRUN_CTG3 unplaced-scaffold na na GL456378.1 = NT_166462.1 C57BL/6J 31602 chrUn_GL456378 MSCHRUN_CTG20 unplaced-scaffold na na GL456379.1 = NT_166463.1 C57BL/6J 72385 chrUn_GL456379 MSCHRUN_CTG4 unplaced-scaffold na na GL456381.1 = NT_166465.1 C57BL/6J 25871 chrUn_GL456381 MSCHRUN_CTG5 unplaced-scaffold na na GL456382.1 = NT_166466.1 C57BL/6J 23158 chrUn_GL456382 MSCHRUN_CTG6 unplaced-scaffold na na GL456383.1 = NT_166467.1 C57BL/6J 38659 chrUn_GL456383 MSCHRUN_CTG7 unplaced-scaffold na na GL456385.1 = NT_166469.1 C57BL/6J 35240 chrUn_GL456385 MSCHRUN_CTG17 unplaced-scaffold na na GL456387.1 = NT_166471.1 C57BL/6J 24685 chrUn_GL456387 MSCHRUN_CTG18 unplaced-scaffold na na GL456389.1 = NT_166473.1 C57BL/6J 28772 chrUn_GL456389 MSCHRUN_CTG9 unplaced-scaffold na na GL456390.1 = NT_166474.1 C57BL/6J 24668 chrUn_GL456390 MSCHRUN_CTG10 unplaced-scaffold na na GL456392.1 = NT_166476.1 C57BL/6J 23629 chrUn_GL456392 MSCHRUN_CTG11 unplaced-scaffold na na GL456393.1 = NT_166477.1 C57BL/6J 55711 chrUn_GL456393 MSCHRUN_CTG12 unplaced-scaffold na na GL456394.1 = NT_166478.1 C57BL/6J 24323 chrUn_GL456394 MSCHRUN_CTG15 unplaced-scaffold na na GL456396.1 = NT_166480.1 C57BL/6J 21240 chrUn_GL456396 MSCHRUN_CTG23 unplaced-scaffold na na JH584304.1 = NT_187064.1 C57BL/6J 114452 chrUn_JH584304 MG4281_PATCH fix-patch 1 Chromosome KV575232.1 = NW_016097312.1 PATCHES 200008 na MG3999_PATCH fix-patch 1 Chromosome KV575233.1 = NW_016097313.1 PATCHES 266016 na MG3496_PATCH fix-patch 1 Chromosome KV575234.1 = NW_016097314.1 PATCHES 686942 na MMCHR1_CHORI29_IDD5_1 novel-patch 1 Chromosome KK082441.1 = NW_006763128.1 PATCHES 456798 chr1_KK082441_alt MG191_PATCH fix-patch 2 Chromosome KV575235.1 = NW_016097315.1 PATCHES 195735 na MG3836_PATCH fix-patch 2 Chromosome KV575236.1 = NW_016097316.1 PATCHES 166096 na MG4248_PATCH fix-patch 3 Chromosome KQ030484.1 = NW_012132900.1 PATCHES 214957 chr3_KQ030484_fix MG3714_PATCH fix-patch 3 Chromosome KZ289064.1 = NW_019168503.1 PATCHES 117769 na MG3712_PATCH fix-patch 3 Chromosome KZ289065.1 = NW_019168504.1 PATCHES 171653 na MG89_PATCH fix-patch 3 Chromosome KZ289066.1 = NW_019168505.1 PATCHES 339234 na MG4136_PATCH fix-patch 4 Chromosome JH792826.1 = NW_004058050.1 PATCHES 368286 chr4_JH792826_fix MG3561_PATCH fix-patch 4 Chromosome KQ030485.1 = NW_012132901.1 PATCHES 185548 chr4_KQ030485_fix MG3562_PATCH fix-patch 4 Chromosome KQ030486.1 = NW_012132902.1 PATCHES 399265 chr4_KQ030486_fix MG3609_PATCH fix-patch 4 Chromosome KQ030487.1 = NW_012132903.1 PATCHES 316842 chr4_KQ030487_fix MG4265_PATCH fix-patch 4 Chromosome KQ030488.1 = NW_012132904.1 PATCHES 45901 chr4_KQ030488_fix MG4266_PATCH fix-patch 4 Chromosome KQ030489.1 = NW_012132905.1 PATCHES 188269 chr4_KQ030489_fix MG4243_PATCH fix-patch 4 Chromosome KZ289067.1 = NW_019168506.1 PATCHES 583977 na MG4310_MG4311_PATCH fix-patch 4 Chromosome KZ289068.1 = NW_019168507.1 PATCHES 532572 na MG51_PATCH fix-patch 4 Chromosome KZ289069.1 = NW_019168508.1 PATCHES 709099 na MG3618_PATCH fix-patch 4 Chromosome KZ289070.1 = NW_019168509.1 PATCHES 378870 na MG4212_PATCH fix-patch 5 Chromosome JH792827.1 = NW_004058051.1 PATCHES 205713 chr5_JH792827_fix MG171_PATCH fix-patch 5 Chromosome KV575237.1 = NW_016097317.1 PATCHES 1224174 na MG184_PATCH fix-patch 6 Chromosome KK082442.1 = NW_006763129.1 PATCHES 154766 chr6_KK082442_fix MG4237_PATCH fix-patch 6 Chromosome KK082443.1 = NW_006763130.1 PATCHES 620323 chr6_KK082443_fix MG4151_PATCH fix-patch 7 Chromosome JH792828.1 = NW_004058052.1 PATCHES 473738 chr7_JH792828_fix MG3251_PATCH fix-patch 7 Chromosome KV575238.1 = NW_016097318.1 PATCHES 414410 na MG3172_PATCH fix-patch 7 Chromosome KV575239.1 = NW_016097319.1 PATCHES 71460 na MG190_MG3751_PATCH fix-patch 8 Chromosome KV575240.1 = NW_016097320.1 PATCHES 171859 na MG132_PATCH fix-patch 9 Chromosome KB469738.3 = NW_004450259.3 PATCHES 210641 chr9_KB469738v3_fix MG117_PATCH fix-patch 9 Chromosome KQ030490.1 = NW_012132906.1 PATCHES 120154 chr9_KQ030490_fix MG4264_PATCH fix-patch 10 Chromosome KQ030491.1 = NW_012132907.1 PATCHES 129865 chr10_KQ030491_fix MG4138_PATCH fix-patch 10 Chromosome KZ289071.1 = NW_019168510.1 PATCHES 355613 na MG3530_PATCH fix-patch 10 Chromosome KZ289072.1 = NW_019168511.1 PATCHES 425386 na MG3829_PATCH fix-patch 11 Chromosome KB469739.1 = NW_004450260.1 PATCHES 331111 chr11_KB469739_fix MG4308_PATCH fix-patch 11 Chromosome KZ289076.1 = NW_019168515.1 PATCHES 318915 na WSB/EIJ_MMCHR11_CTG1 novel-patch 11 Chromosome KZ289073.1 = NW_019168512.1 PATCHES 215264 na WSB/EIJ_MMCHR11_CTG2 novel-patch 11 Chromosome KZ289074.1 = NW_019168513.1 PATCHES 394026 na WSB/EIJ_MMCHR11_CTG3 novel-patch 11 Chromosome KZ289075.1 = NW_019168514.1 PATCHES 322221 na PWK/PHJ_MMCHR11_CTG1 novel-patch 11 Chromosome KZ289077.1 = NW_019168516.1 PATCHES 186144 na PWK/PHJ_MMCHR11_CTG2 novel-patch 11 Chromosome KZ289078.1 = NW_019168517.1 PATCHES 390920 na PWK/PHJ_MMCHR11_CTG3 novel-patch 11 Chromosome KZ289079.1 = NW_019168518.1 PATCHES 368967 na CAST/EI_MMCHR11_CTG4 novel-patch 11 Chromosome KZ289080.1 = NW_019168519.1 PATCHES 394982 na CAST/EI_MMCHR11_CTG5 novel-patch 11 Chromosome KZ289081.1 = NW_019168520.1 PATCHES 369973 na MG4180_PATCH fix-patch 12 Chromosome KB469740.1 = NW_004450261.1 PATCHES 316140 chr12_KB469740_fix MG3490_PATCH fix-patch 12 Chromosome KZ289082.1 = NW_019168521.1 PATCHES 111720 na MG4162_PATCH fix-patch 14 Chromosome KZ289083.1 = NW_019168522.1 PATCHES 66290 na MG3627_PATCH fix-patch 14 Chromosome KZ289084.1 = NW_019168523.1 PATCHES 283434 na MG4259_PATCH fix-patch 15 Chromosome KQ030492.1 = NW_012132908.1 PATCHES 166012 chr15_KQ030492_fix MG4261_PATCH fix-patch 15 Chromosome KQ030493.2 = NW_012132909.2 PATCHES 423369 na MG4288_PATCH fix-patch 15 Chromosome KV575241.1 = NW_016097321.1 PATCHES 211337 na MG3648_PATCH fix-patch 15 Chromosome KZ289085.1 = NW_019168524.1 PATCHES 380404 na MG74_PATCH fix-patch 15 Chromosome KZ289086.1 = NW_019168525.1 PATCHES 542789 na MG3833_MG4220_PATCH fix-patch 16 Chromosome KB469741.2 = NW_004450262.2 PATCHES 505876 na MG4222_MG3908_PATCH fix-patch 17 Chromosome KB469742.1 = NW_004450263.1 PATCHES 1059955 chr17_KB469742_fix MG4198_PATCH fix-patch 17 Chromosome KZ289087.1 = NW_019168526.1 PATCHES 253113 na MG209_PATCH fix-patch 17 Chromosome KZ289088.1 = NW_019168527.1 PATCHES 328684 na MG4200_PATCH fix-patch 17 Chromosome KZ289089.1 = NW_019168528.1 PATCHES 662433 na MG3835_PATCH fix-patch 18 Chromosome JH792829.1 = NW_004058053.1 PATCHES 352455 chr18_JH792829_fix MG3699_PATCH fix-patch 18 Chromosome KZ289090.1 = NW_019168529.1 PATCHES 263917 na MG3700_PATCH fix-patch 18 Chromosome KZ289091.1 = NW_019168530.1 PATCHES 448905 na MG153_PATCH fix-patch 19 Chromosome JH792830.1 = NW_004058054.1 PATCHES 246751 chr19_JH792830_fix MG4249_PATCH fix-patch 19 Chromosome KQ030494.1 = NW_012132910.1 PATCHES 506812 chr19_KQ030494_fix MG65_PATCH fix-patch 19 Chromosome KV575242.1 = NW_016097322.1 PATCHES 299789 na MG4214_PATCH fix-patch X Chromosome JH792831.2 = NW_004058055.2 PATCHES 203377 na MG3231_PATCH fix-patch X Chromosome KQ030495.1 = NW_012132911.1 PATCHES 490000 chrX_KQ030495_fix MG4254_PATCH fix-patch X Chromosome KQ030496.1 = NW_012132912.1 PATCHES 260447 chrX_KQ030496_fix MG4255_PATCH fix-patch X Chromosome KQ030497.1 = NW_012132913.1 PATCHES 219721 chrX_KQ030497_fix MG104_PATCH fix-patch X Chromosome KZ289092.1 = NW_019168531.1 PATCHES 460895 na MG3656_PATCH fix-patch X Chromosome KZ289093.1 = NW_019168532.1 PATCHES 245130 na MG3683_PATCH fix-patch X Chromosome KZ289094.1 = NW_019168533.1 PATCHES 155470 na MG3686_PATCH fix-patch X Chromosome KZ289095.1 = NW_019168534.1 PATCHES 305464 na MG4209_PATCH fix-patch Y Chromosome JH792832.1 = NW_004058056.1 PATCHES 544189 chrY_JH792832_fix MG4211_PATCH fix-patch Y Chromosome JH792833.1 = NW_004058057.1 PATCHES 221588 chrY_JH792833_fix MG4213_PATCH fix-patch Y Chromosome JH792834.1 = NW_004058058.1 PATCHES 331480 chrY_JH792834_fix 129P2/OLAHSD_MMCHR19_CTG1 alt-scaffold 19 Chromosome GL456079.1 = NT_039697.1 129P2/OlaHsd 46440 na 129S1/SVIMJ_MMCHR2_CTG2 alt-scaffold 2 Chromosome GL456024.2 = NT_039223.3 129S1/SvImJ 410905 na 129S1/SVIMJ_MMCHR3_CTG3 alt-scaffold 3 Chromosome GL456006.1 = NT_039248.1 129S1/SvImJ 320308 na 129S1/SVIMJ_MMCHR3_CTG2 alt-scaffold 3 Chromosome GL456007.1 = NT_039256.1 129S1/SvImJ 273369 na 129S1/SVIMJ_MMCHR3_CTG4 alt-scaffold 3 Chromosome GL456008.1 = NT_080257.1 129S1/SvImJ 124933 na 129S1/SVIMJ_MMCHR5_CTG5 alt-scaffold 5 Chromosome GL456011.1 = NT_109599.1 129S1/SvImJ 180394 na 129S1/SVIMJ_MMCHR6_CTG1 alt-scaffold 6 Chromosome GL456025.1 = NT_039373.1 129S1/SvImJ 145152 na 129S1/SVIMJ_MMCHR6_CTG5 alt-scaffold 6 Chromosome GL456026.2 = NT_039382.4 129S1/SvImJ 636141 na 129S1/SVIMJ_MMCHR7_CTG1 alt-scaffold 7 Chromosome GL456014.1 = NT_078572.1 129S1/SvImJ 91251 na 129S1/SVIMJ_MMCHR12_CTG1 alt-scaffold 12 Chromosome GL456017.2 = NT_114985.3 129S1/SvImJ 1714434 na 129S1/SVIMJ_MMCHR12_CTG3 alt-scaffold 12 Chromosome GL456074.1 = NT_114988.1 129S1/SvImJ 84250 na 129S1/SVIMJ_MMCHR13_CTG1 alt-scaffold 13 Chromosome JH584305.1 = NT_187006.1 129S1/SvImJ 179252 na 129S1/SVIMJ_MMCHR14_CTG3 alt-scaffold 14 Chromosome GL456019.1 = NT_039614.1 129S1/SvImJ 1666365 na 129S1/SVIMJ_MMCHR16_CTG1 alt-scaffold 16 Chromosome JH584306.1 = NT_187007.1 129S1/SvImJ 480699 na 129S1/SVIMJ_MMCHR16_CTG2 alt-scaffold 16 Chromosome JH584307.1 = NT_187008.1 129S1/SvImJ 250595 na 129S1/SVIMJ_MMCHR17_CTG3 alt-scaffold 17 Chromosome JH584308.1 = NT_187010.1 129S1/SvImJ 273566 na 129S1/SVIMJ_MMCHR17_CTG4 alt-scaffold 17 Chromosome JH584309.1 = NT_187011.1 129S1/SvImJ 162935 na 129S1/SVIMJ_MMCHR17_CTG2 alt-scaffold 17 Chromosome JH590470.1 = NT_187009.1 129S1/SvImJ 1154078 na 129S1/SVIMJ_MMCHRX_CTG10 alt-scaffold X Chromosome GL456031.1 = NT_111920.1 129S1/SvImJ 247850 na 129S1/SVIMJ_MMCHRX_CTG3 alt-scaffold X Chromosome GL456032.1 = NT_039744.2 129S1/SvImJ 194271 na 129S1/SVIMJ_MMCHRX_CTG7 alt-scaffold X Chromosome GL456033.2 = NT_039747.4 129S1/SvImJ 78689 na 129S2/SVPAS_MMCHR7_CTG1 alt-scaffold 7 Chromosome GL456013.1 = NT_039443.1 129S2/SvPas 34498 na 129S6/SVEVTAC_MMCHR1_CTG3 alt-scaffold 1 Chromosome GL455991.1 = NT_039192.2 129S6/SvEvTac 281255 na 129S6/SVEVTAC_MMCHR1_CTG4 alt-scaffold 1 Chromosome GL455992.2 = NT_039194.5 129S6/SvEvTac 120856 na 129S6/SVEVTAC_MMCHR1_CTG1 alt-scaffold 1 Chromosome GL455993.1 = NT_039198.1 129S6/SvEvTac 272653 na 129S6/SVEVTAC_MMCHR4_CTG1 alt-scaffold 4 Chromosome GL455994.1 = NT_039291.1 129S6/SvEvTac 170592 na 129S6/SVEVTAC_MMCHR5_CTG1 alt-scaffold 5 Chromosome GL455995.1 = NT_039334.1 129S6/SvEvTac 262166 na 129S6/SVEVTAC_MMCHR8_CTG1 alt-scaffold 8 Chromosome GL455996.1 = NT_039469.1 129S6/SvEvTac 183135 na 129S6/SVEVTAC_MMCHR8_CTG2 alt-scaffold 8 Chromosome GL455997.1 = NT_039470.1 129S6/SvEvTac 251056 na 129S6/SVEVTAC_MMCHR11_CTG1 alt-scaffold 11 Chromosome GL455998.1 = NT_078683.1 129S6/SvEvTac 170397 na 129S6/SVEVTAC_MMCHR13_CTG1 alt-scaffold 13 Chromosome GL455999.2 = NT_039594.3 129S6/SvEvTac 138435 na 129S6/SVEVTAC_MMCHR15_CTG1 alt-scaffold 15 Chromosome GL456000.1 = NT_039622.1 129S6/SvEvTac 88442 na 129S6/SVEVTAC_MMCHR16_CTG6 alt-scaffold 16 Chromosome GL456001.2 = NT_039634.4 129S6/SvEvTac 1618162 na 129S6/SVEVTAC_MMCHR16_CTG1 alt-scaffold 16 Chromosome JH584310.1 = NT_187012.1 129S6/SvEvTac 261336 na 129S6/SVEVTAC_MMCHR16_CTG2 alt-scaffold 16 Chromosome JH584311.1 = NT_187013.1 129S6/SvEvTac 189707 na 129S6/SVEVTAC_MMCHR16_CTG3 alt-scaffold 16 Chromosome JH584312.1 = NT_187014.1 129S6/SvEvTac 184044 na 129S6/SVEVTAC_MMCHR16_CTG4 alt-scaffold 16 Chromosome JH584313.1 = NT_187015.1 129S6/SvEvTac 374389 na 129S6/SVEVTAC_MMCHR16_CTG5 alt-scaffold 16 Chromosome JH584314.1 = NT_187016.1 129S6/SvEvTac 170763 na 129S6/SVEVTAC_MMCHR17_CTG2 alt-scaffold 17 Chromosome GL456002.2 = NT_039666.2 129S6/SvEvTac 285971 na 129S6/SVEVTAC_MMCHR17_CTG1 alt-scaffold 17 Chromosome GL456021.2 = NT_039661.4 129S6/SvEvTac 28130 na 129S6/SVEVTAC_MMCHRX_CTG2 alt-scaffold X Chromosome GL456003.2 = NT_039739.2 129S6/SvEvTac 414761 na 129S6/SVEVTAC_MMCHRX_CTG6 alt-scaffold X Chromosome GL456004.1 = NT_099024.1 129S6/SvEvTac 123835 na 129X1/SVJ_MMCHR1_CTG2 alt-scaffold 1 Chromosome GL456005.1 = NT_039195.1 129X1/SvJ 154284 na 129X1/SVJ_MMCHR1_CTG1 alt-scaffold 1 Chromosome JH584315.1 = NT_187017.1 129X1/SvJ 220020 na 129X1/SVJ_MMCHR4_CTG2 alt-scaffold 4 Chromosome GL456010.1 = NT_039296.1 129X1/SvJ 76099 na 129X1/SVJ_MMCHR6_CTG1 alt-scaffold 6 Chromosome GL456012.2 = NT_039372.2 129X1/SvJ 312568 na 129X1/SVJ_MMCHR6_CTG3 alt-scaffold 6 Chromosome GL456065.1 = NT_039367.1 129X1/SvJ 198515 na 129X1/SVJ_MMCHR11_CTG3 alt-scaffold 11 Chromosome GL456016.1 = NT_039525.1 129X1/SvJ 161334 na 129X1/SVJ_MMCHR14_CTG1 alt-scaffold 14 Chromosome GL456020.1 = NT_096797.1 129X1/SvJ 105813 na 129X1/SVJ_MMCHR16_CTG1 alt-scaffold 16 Chromosome GL456028.2 = NT_039630.5 129X1/SvJ 176974 na 129X1/SVJ_MMCHR17_CTG2 alt-scaffold 17 Chromosome GL456022.2 = NT_039662.3 129X1/SvJ 1934410 na A/J_MMCHR13_CTG1 alt-scaffold 13 Chromosome GL455990.1 = NT_039593.1 A/J 100803 na AKR/J_MMCHRY_CTG1 alt-scaffold Y Chromosome GL456080.1 = NT_166394.1 AKR/J 191521 na AKR/J_MMCHRY_CTG2 alt-scaffold Y Chromosome GL456081.1 = NT_166397.1 AKR/J 185346 na AKR/J_MMCHRY_CTG3 alt-scaffold Y Chromosome GL456082.1 = NT_166400.1 AKR/J 209635 na BALB/C_MMCHR7_CTG1 alt-scaffold 7 Chromosome GL455989.1 = NT_095534.1 BALB/c 55856 na BALB/C_MMCHR12_CTG1 alt-scaffold 12 Chromosome GL456068.1 = NT_096355.1 BALB/c 59641 na CAST/EI_MMCHR11_CTG1 alt-scaffold 11 Chromosome JH584316.1 = NT_187028.1 CAST/Ei 247497 na CAST/EI_MMCHR11_CTG3 alt-scaffold 11 Chromosome JH584317.1 = NT_187029.1 CAST/Ei 186379 na CAST/EI_MMCHR18_CTG1 alt-scaffold 18 Chromosome JH584318.1 = NT_187030.1 CAST/Ei 231969 na CAST/EI_MMCHRY_CTG1 alt-scaffold Y Chromosome GL456071.1 = NT_166396.1 CAST/Ei 189119 na CAST/EI_MMCHRY_CTG2 alt-scaffold Y Chromosome GL456072.1 = NT_166398.1 CAST/Ei 204663 na CAST/EI_MMCHRY_CTG3 alt-scaffold Y Chromosome GL456073.1 = NT_166399.1 CAST/Ei 196014 na MMCHR1_NOD_IDD5_1 alt-scaffold 1 Chromosome JH584320.1 = NT_187019.1 NOD/MrkTac 1003859 na MMCHR1_NOD_IDD5_3 alt-scaffold 1 Chromosome JH584321.1 = NT_187020.1 NOD/MrkTac 3760957 na MMCHR1_NOD_IDD5_4 alt-scaffold 1 Chromosome JH584322.1 = NT_187021.1 NOD/MrkTac 326027 na MMCHR3_NOD_IDD18_1 alt-scaffold 3 Chromosome GL456042.2 = NT_114257.4 NOD/MrkTac 689363 na MMCHR3_NOD_IDD18_2 alt-scaffold 3 Chromosome GL456044.2 = NT_166287.2 NOD/MrkTac 466430 na MMCHR3_NODMRKTAC_CTG1 alt-scaffold 3 Chromosome GL456045.2 = NT_039247.2 NOD/MrkTac 161821 na MMCHR3_NOD_IDD3_1 alt-scaffold 3 Chromosome GL456048.1 = NT_039252.1 NOD/MrkTac 292416 na MMCHR3_NODMRKTAC_CTG2 alt-scaffold 3 Chromosome GL456049.2 = NT_039257.4 NOD/MrkTac 243366 na MMCHR3_NOD_IDD10_1 alt-scaffold 3 Chromosome JH584323.1 = NT_187022.1 NOD/MrkTac 1153325 na MMCHR4_NOD_IDD9_2 alt-scaffold 4 Chromosome GL456053.2 = NT_166299.2 NOD/MrkTac 3205425 na MMCHR4_NOD_IDD9_1 alt-scaffold 4 Chromosome JH584324.1 = NT_187023.1 NOD/MrkTac 3050841 na MMCHR4_NOD_IDD9_1M alt-scaffold 4 Chromosome JH584325.1 = NT_187024.1 NOD/MrkTac 215601 na MMCHR4_NOD_IDD9_3 alt-scaffold 4 Chromosome JH584326.1 = NT_187025.1 NOD/MrkTac 1625541 na MMCHR11_NOD_IDD4_2 alt-scaffold 11 Chromosome GL456060.2 = NT_166317.2 NOD/MrkTac 1462311 na MMCHR11_NOD_IDD4_1 alt-scaffold 11 Chromosome JH584327.1 = NT_187026.1 NOD/MrkTac 1550185 na MMCHR17_NOD_IDD1 alt-scaffold 17 Chromosome JH584328.1 = NT_187027.1 NOD/MrkTac 4256209 na MMCHRUN_NODMRKTAC_CTG1 alt-scaffold na na GL456050.1 = NT_080256.1 NOD/MrkTac 142341 na MMCHR6_CHORI29_IDD6_1+2 alt-scaffold 6 Chromosome GL456054.2 = NT_166305.2 NOD/ShiLtJ 5956088 na MMCHR6_CHORI29_IDD6_3 alt-scaffold 6 Chromosome JH584264.1 = NT_187002.1 NOD/ShiLtJ 1759414 na MMCHR11_CHORI29_IDD4_2Q alt-scaffold 11 Chromosome JH584265.1 = NT_187003.1 NOD/ShiLtJ 3086744 na MMCHR17_CHO_IDD1 alt-scaffold 17 Chromosome JH584266.1 = NT_187004.1 NOD/ShiLtJ 4910976 na MMCHR17_CHORI29_IDD16_1 alt-scaffold 17 Chromosome JH584267.1 = NT_187005.1 NOD/ShiLtJ 1908920 na RIII_MMCHR12_CTG1 alt-scaffold 12 Chromosome GL456349.1 = NT_166433.1 RIII 83612 na RIII_MMCHR18_CTG1 alt-scaffold 18 Chromosome GL456070.1 = NT_165784.1 RIII 85548 na UNKNOWN_MMCHR4_CTG7 alt-scaffold 4 Chromosome GL456009.1 = NT_109318.2 UNKNOWN 240498 na UNKNOWN_MMCHR4_CTG1 alt-scaffold 4 Chromosome GL456064.1 = NT_039292.1 UNKNOWN 138473 na UNKNOWN_MMCHR10_CTG3 alt-scaffold 10 Chromosome GL456015.1 = NT_078651.1 UNKNOWN 77891 na UNKNOWN_MMCHR17_CTG3 alt-scaffold 17 Chromosome GL456069.1 = NT_097336.1 UNKNOWN 138490 na UNKNOWN_MMCHR19_CTG2 alt-scaffold 19 Chromosome JH584319.1 = NT_187018.1 UNKNOWN 25407 na 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG2 alt-scaffold 4 Chromosome GL456075.1 = NT_166293.1 129S7/SvEvBrd-Hprt-b-m2 264822 na 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG3 alt-scaffold 4 Chromosome GL456076.1 = NT_166294.1 129S7/SvEvBrd-Hprt-b-m2 191695 na 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG4 alt-scaffold 4 Chromosome GL456077.1 = NT_166295.1 129S7/SvEvBrd-Hprt-b-m2 83218 na 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG5 alt-scaffold 4 Chromosome JH584268.1 = NT_186999.1 129S7/SvEvBrd-Hprt-b-m2 69753 na 129S7/SVEVBRD-HPRT-B-M2_MMCHR4_CTG6 alt-scaffold 4 Chromosome JH584269.1 = NT_187000.1 129S7/SvEvBrd-Hprt-b-m2 284739 na 129S7/SVEVBRD-HPRT-B-M2_MMCHR12_CTG2 alt-scaffold 12 Chromosome GL456078.1 = NT_166322.1 129S7/SvEvBrd-Hprt-b-m2 99963 na 129S7/SVEVBRD-HPRT-B-M2_MMCHR15_CTG1 alt-scaffold 15 Chromosome JH584270.1 = NT_187001.1 129S7/SvEvBrd-Hprt-b-m2 89177 na MT assembled-molecule MT Mitochondrion AY172335.1 = NC_005089.1 non-nuclear 16299 chrM