# Assembly name: fPimPro1.hap1.1 # Organism name: Pimephales promelas (fathead minnow) # Taxid: 90988 # BioSample: SAMEA118573200 # BioProject: PRJEB126656 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-09-17 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CGBMNP01 # Assembly method: various # Genome coverage: 126x # Sequencing technology: Oxford Nanopore,Arima2 # GenBank assembly accession: GCA_988280905.1 # Linked assembly: GCA_988280895.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ557656.1 <> na Primary Assembly 54001076 na SUPER_2 assembled-molecule 2 Chromosome OZ557657.1 <> na Primary Assembly 53124567 na SUPER_3 assembled-molecule 3 Chromosome OZ557658.1 <> na Primary Assembly 49948139 na SUPER_4 assembled-molecule 4 Chromosome OZ557659.1 <> na Primary Assembly 50420642 na SUPER_5 assembled-molecule 5 Chromosome OZ557660.1 <> na Primary Assembly 44187932 na SUPER_6 assembled-molecule 6 Chromosome OZ557661.1 <> na Primary Assembly 42656917 na SUPER_7 assembled-molecule 7 Chromosome OZ557662.1 <> na Primary Assembly 41815280 na SUPER_8 assembled-molecule 8 Chromosome OZ557663.1 <> na Primary Assembly 39691121 na SUPER_9 assembled-molecule 9 Chromosome OZ557664.1 <> na Primary Assembly 39567146 na SUPER_10 assembled-molecule 10 Chromosome OZ557665.1 <> na Primary Assembly 38173160 na SUPER_11 assembled-molecule 11 Chromosome OZ557666.1 <> na Primary Assembly 37324483 na SUPER_12 assembled-molecule 12 Chromosome OZ557667.1 <> na Primary Assembly 36991743 na SUPER_13 assembled-molecule 13 Chromosome OZ557668.1 <> na Primary Assembly 36571525 na SUPER_14 assembled-molecule 14 Chromosome OZ557669.1 <> na Primary Assembly 36064097 na SUPER_15 assembled-molecule 15 Chromosome OZ557670.1 <> na Primary Assembly 35955070 na SUPER_16 assembled-molecule 16 Chromosome OZ557671.1 <> na Primary Assembly 35329914 na SUPER_17 assembled-molecule 17 Chromosome OZ557672.1 <> na Primary Assembly 34474203 na SUPER_18 assembled-molecule 18 Chromosome OZ557673.1 <> na Primary Assembly 33711415 na SUPER_19 assembled-molecule 19 Chromosome OZ557674.1 <> na Primary Assembly 32480396 na SUPER_20 assembled-molecule 20 Chromosome OZ557675.1 <> na Primary Assembly 32091247 na SUPER_21 assembled-molecule 21 Chromosome OZ557676.1 <> na Primary Assembly 31123121 na SUPER_22 assembled-molecule 22 Chromosome OZ557677.1 <> na Primary Assembly 30416006 na SUPER_23 assembled-molecule 23 Chromosome OZ557678.1 <> na Primary Assembly 29622499 na SUPER_24 assembled-molecule 24 Chromosome OZ557679.1 <> na Primary Assembly 29570840 na SUPER_25 assembled-molecule 25 Chromosome OZ557680.1 <> na Primary Assembly 26626181 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome CGBMNP010000001.1 <> na Primary Assembly 698072 na SUPER_3_unloc_2 unlocalized-scaffold 3 Chromosome CGBMNP010000002.1 <> na Primary Assembly 142102 na HAP1_SCAFFOLD_36 unplaced-scaffold na na CGBMNP010000003.1 <> na Primary Assembly 445746 na HAP1_SCAFFOLD_43 unplaced-scaffold na na CGBMNP010000004.1 <> na Primary Assembly 260039 na HAP1_SCAFFOLD_45 unplaced-scaffold na na CGBMNP010000005.1 <> na Primary Assembly 228429 na HAP1_SCAFFOLD_50 unplaced-scaffold na na CGBMNP010000006.1 <> na Primary Assembly 143281 na HAP1_SCAFFOLD_52 unplaced-scaffold na na CGBMNP010000007.1 <> na Primary Assembly 142000 na HAP1_SCAFFOLD_59 unplaced-scaffold na na CGBMNP010000008.1 <> na Primary Assembly 112741 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CGBMNP010000009.1 <> na Primary Assembly 103120 na HAP1_SCAFFOLD_68 unplaced-scaffold na na CGBMNP010000010.1 <> na Primary Assembly 91000 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CGBMNP010000011.1 <> na Primary Assembly 85000 na HAP1_SCAFFOLD_71 unplaced-scaffold na na CGBMNP010000012.1 <> na Primary Assembly 83104 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CGBMNP010000013.1 <> na Primary Assembly 82334 na HAP1_SCAFFOLD_73 unplaced-scaffold na na CGBMNP010000014.1 <> na Primary Assembly 81120 na HAP1_SCAFFOLD_74 unplaced-scaffold na na CGBMNP010000015.1 <> na Primary Assembly 79572 na HAP1_SCAFFOLD_75 unplaced-scaffold na na CGBMNP010000016.1 <> na Primary Assembly 77000 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CGBMNP010000017.1 <> na Primary Assembly 74500 na HAP1_SCAFFOLD_80 unplaced-scaffold na na CGBMNP010000018.1 <> na Primary Assembly 72924 na HAP1_SCAFFOLD_81 unplaced-scaffold na na CGBMNP010000019.1 <> na Primary Assembly 69490 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CGBMNP010000020.1 <> na Primary Assembly 63185 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CGBMNP010000021.1 <> na Primary Assembly 61000 na HAP1_SCAFFOLD_86 unplaced-scaffold na na CGBMNP010000022.1 <> na Primary Assembly 58000 na HAP1_SCAFFOLD_87 unplaced-scaffold na na CGBMNP010000023.1 <> na Primary Assembly 55000 na HAP1_SCAFFOLD_88 unplaced-scaffold na na CGBMNP010000024.1 <> na Primary Assembly 53434 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CGBMNP010000025.1 <> na Primary Assembly 50975 na HAP1_SCAFFOLD_90 unplaced-scaffold na na CGBMNP010000026.1 <> na Primary Assembly 50569 na HAP1_SCAFFOLD_92 unplaced-scaffold na na CGBMNP010000027.1 <> na Primary Assembly 50000 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CGBMNP010000028.1 <> na Primary Assembly 49992 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CGBMNP010000029.1 <> na Primary Assembly 49616 na HAP1_SCAFFOLD_95 unplaced-scaffold na na CGBMNP010000030.1 <> na Primary Assembly 49347 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CGBMNP010000031.1 <> na Primary Assembly 48348 na HAP1_SCAFFOLD_97 unplaced-scaffold na na CGBMNP010000032.1 <> na Primary Assembly 47343 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CGBMNP010000033.1 <> na Primary Assembly 46656 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CGBMNP010000034.1 <> na Primary Assembly 43932 na HAP1_SCAFFOLD_102 unplaced-scaffold na na CGBMNP010000035.1 <> na Primary Assembly 40236 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CGBMNP010000036.1 <> na Primary Assembly 39163 na HAP1_SCAFFOLD_104 unplaced-scaffold na na CGBMNP010000037.1 <> na Primary Assembly 37853 na HAP1_SCAFFOLD_105 unplaced-scaffold na na CGBMNP010000038.1 <> na Primary Assembly 37681 na HAP1_SCAFFOLD_106 unplaced-scaffold na na CGBMNP010000039.1 <> na Primary Assembly 33225 na HAP1_SCAFFOLD_107 unplaced-scaffold na na CGBMNP010000040.1 <> na Primary Assembly 33090 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CGBMNP010000041.1 <> na Primary Assembly 32000 na HAP1_SCAFFOLD_112 unplaced-scaffold na na CGBMNP010000042.1 <> na Primary Assembly 26815 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CGBMNP010000043.1 <> na Primary Assembly 26720 na HAP1_SCAFFOLD_114 unplaced-scaffold na na CGBMNP010000044.1 <> na Primary Assembly 25804 na HAP1_SCAFFOLD_116 unplaced-scaffold na na CGBMNP010000045.1 <> na Primary Assembly 23451 na HAP1_SCAFFOLD_119 unplaced-scaffold na na CGBMNP010000046.1 <> na Primary Assembly 21846 na HAP1_SCAFFOLD_122 unplaced-scaffold na na CGBMNP010000047.1 <> na Primary Assembly 19289 na HAP1_SCAFFOLD_123 unplaced-scaffold na na CGBMNP010000048.1 <> na Primary Assembly 19178 na HAP1_SCAFFOLD_124 unplaced-scaffold na na CGBMNP010000049.1 <> na Primary Assembly 18252 na HAP1_SCAFFOLD_125 unplaced-scaffold na na CGBMNP010000050.1 <> na Primary Assembly 17877 na HAP1_SCAFFOLD_126 unplaced-scaffold na na CGBMNP010000051.1 <> na Primary Assembly 16302 na HAP1_SCAFFOLD_127 unplaced-scaffold na na CGBMNP010000052.1 <> na Primary Assembly 13695 na HAP1_SCAFFOLD_128 unplaced-scaffold na na CGBMNP010000053.1 <> na Primary Assembly 13289 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CGBMNP010000054.1 <> na Primary Assembly 10982 na HAP1_SCAFFOLD_130 unplaced-scaffold na na CGBMNP010000055.1 <> na Primary Assembly 10695 na HAP1_SCAFFOLD_131 unplaced-scaffold na na CGBMNP010000056.1 <> na Primary Assembly 10676 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CGBMNP010000057.1 <> na Primary Assembly 9922 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CGBMNP010000058.1 <> na Primary Assembly 9622 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CGBMNP010000059.1 <> na Primary Assembly 9621 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CGBMNP010000060.1 <> na Primary Assembly 9381 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CGBMNP010000061.1 <> na Primary Assembly 9335 na HAP1_SCAFFOLD_139 unplaced-scaffold na na CGBMNP010000062.1 <> na Primary Assembly 7883 na HAP1_SCAFFOLD_141 unplaced-scaffold na na CGBMNP010000063.1 <> na Primary Assembly 7727 na HAP1_SCAFFOLD_142 unplaced-scaffold na na CGBMNP010000064.1 <> na Primary Assembly 7586 na HAP1_SCAFFOLD_143 unplaced-scaffold na na CGBMNP010000065.1 <> na Primary Assembly 7262 na HAP1_SCAFFOLD_144 unplaced-scaffold na na CGBMNP010000066.1 <> na Primary Assembly 7214 na HAP1_SCAFFOLD_145 unplaced-scaffold na na CGBMNP010000067.1 <> na Primary Assembly 6839 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CGBMNP010000068.1 <> na Primary Assembly 5806 na HAP1_SCAFFOLD_148 unplaced-scaffold na na CGBMNP010000069.1 <> na Primary Assembly 5761 na HAP1_SCAFFOLD_149 unplaced-scaffold na na CGBMNP010000070.1 <> na Primary Assembly 5732 na HAP1_SCAFFOLD_150 unplaced-scaffold na na CGBMNP010000071.1 <> na Primary Assembly 5345 na HAP1_SCAFFOLD_151 unplaced-scaffold na na CGBMNP010000072.1 <> na Primary Assembly 5262 na HAP1_SCAFFOLD_152 unplaced-scaffold na na CGBMNP010000073.1 <> na Primary Assembly 5231 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CGBMNP010000074.1 <> na Primary Assembly 5016 na HAP1_SCAFFOLD_154 unplaced-scaffold na na CGBMNP010000075.1 <> na Primary Assembly 5007 na HAP1_SCAFFOLD_155 unplaced-scaffold na na CGBMNP010000076.1 <> na Primary Assembly 5000 na HAP1_SCAFFOLD_156 unplaced-scaffold na na CGBMNP010000077.1 <> na Primary Assembly 4790 na HAP1_SCAFFOLD_157 unplaced-scaffold na na CGBMNP010000078.1 <> na Primary Assembly 4699 na HAP1_SCAFFOLD_158 unplaced-scaffold na na CGBMNP010000079.1 <> na Primary Assembly 4637 na HAP1_SCAFFOLD_159 unplaced-scaffold na na CGBMNP010000080.1 <> na Primary Assembly 4615 na HAP1_SCAFFOLD_160 unplaced-scaffold na na CGBMNP010000081.1 <> na Primary Assembly 4611 na HAP1_SCAFFOLD_161 unplaced-scaffold na na CGBMNP010000082.1 <> na Primary Assembly 4575 na HAP1_SCAFFOLD_162 unplaced-scaffold na na CGBMNP010000083.1 <> na Primary Assembly 4423 na HAP1_SCAFFOLD_163 unplaced-scaffold na na CGBMNP010000084.1 <> na Primary Assembly 3884 na HAP1_SCAFFOLD_164 unplaced-scaffold na na CGBMNP010000085.1 <> na Primary Assembly 3774 na HAP1_SCAFFOLD_165 unplaced-scaffold na na CGBMNP010000086.1 <> na Primary Assembly 3660 na HAP1_SCAFFOLD_166 unplaced-scaffold na na CGBMNP010000087.1 <> na Primary Assembly 3638 na HAP1_SCAFFOLD_167 unplaced-scaffold na na CGBMNP010000088.1 <> na Primary Assembly 3597 na HAP1_SCAFFOLD_168 unplaced-scaffold na na CGBMNP010000089.1 <> na Primary Assembly 3454 na HAP1_SCAFFOLD_169 unplaced-scaffold na na CGBMNP010000090.1 <> na Primary Assembly 3411 na HAP1_SCAFFOLD_170 unplaced-scaffold na na CGBMNP010000091.1 <> na Primary Assembly 3266 na HAP1_SCAFFOLD_171 unplaced-scaffold na na CGBMNP010000092.1 <> na Primary Assembly 3213 na HAP1_SCAFFOLD_172 unplaced-scaffold na na CGBMNP010000093.1 <> na Primary Assembly 3136 na HAP1_SCAFFOLD_173 unplaced-scaffold na na CGBMNP010000094.1 <> na Primary Assembly 3131 na HAP1_SCAFFOLD_174 unplaced-scaffold na na CGBMNP010000095.1 <> na Primary Assembly 3109 na HAP1_SCAFFOLD_175 unplaced-scaffold na na CGBMNP010000096.1 <> na Primary Assembly 3069 na HAP1_SCAFFOLD_177 unplaced-scaffold na na CGBMNP010000097.1 <> na Primary Assembly 2744 na HAP1_SCAFFOLD_178 unplaced-scaffold na na CGBMNP010000098.1 <> na Primary Assembly 2710 na HAP1_SCAFFOLD_179 unplaced-scaffold na na CGBMNP010000099.1 <> na Primary Assembly 2693 na HAP1_SCAFFOLD_180 unplaced-scaffold na na CGBMNP010000100.1 <> na Primary Assembly 2687 na HAP1_SCAFFOLD_181 unplaced-scaffold na na CGBMNP010000101.1 <> na Primary Assembly 2595 na HAP1_SCAFFOLD_182 unplaced-scaffold na na CGBMNP010000102.1 <> na Primary Assembly 2459 na HAP1_SCAFFOLD_183 unplaced-scaffold na na CGBMNP010000103.1 <> na Primary Assembly 2395 na HAP1_SCAFFOLD_184 unplaced-scaffold na na CGBMNP010000104.1 <> na Primary Assembly 2368 na HAP1_SCAFFOLD_185 unplaced-scaffold na na CGBMNP010000105.1 <> na Primary Assembly 2307 na HAP1_SCAFFOLD_186 unplaced-scaffold na na CGBMNP010000106.1 <> na Primary Assembly 2289 na HAP1_SCAFFOLD_187 unplaced-scaffold na na CGBMNP010000107.1 <> na Primary Assembly 2268 na HAP1_SCAFFOLD_188 unplaced-scaffold na na CGBMNP010000108.1 <> na Primary Assembly 2249 na HAP1_SCAFFOLD_189 unplaced-scaffold na na CGBMNP010000109.1 <> na Primary Assembly 2194 na HAP1_SCAFFOLD_190 unplaced-scaffold na na CGBMNP010000110.1 <> na Primary Assembly 2170 na HAP1_SCAFFOLD_191 unplaced-scaffold na na CGBMNP010000111.1 <> na Primary Assembly 2164 na HAP1_SCAFFOLD_192 unplaced-scaffold na na CGBMNP010000112.1 <> na Primary Assembly 2018 na HAP1_SCAFFOLD_193 unplaced-scaffold na na CGBMNP010000113.1 <> na Primary Assembly 2049 na HAP1_SCAFFOLD_194 unplaced-scaffold na na CGBMNP010000114.1 <> na Primary Assembly 2000 na HAP1_SCAFFOLD_195 unplaced-scaffold na na CGBMNP010000115.1 <> na Primary Assembly 1872 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ557681.1 <> na non-nuclear 16710 na