# Assembly name:  bAcaCab1.hap1.1
# Organism name:  Acanthis cabaret (lesser redpoll)
# Taxid:          1603565
# BioSample:      SAMEA117632798
# BioProject:     PRJEB126633
# Submitter:      WELLCOME SANGER INSTITUTE
# Date:           2026-09-17
# Assembly type:  haploid (haplotype 1)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    CGBMNH01
# Assembly method: various
# Genome coverage: 55x
# Sequencing technology: Oxford Nanopore,Arima2
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_988280675.1
# Linked assembly: GCA_988280715.1 (haplotype 2)
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	OZ557551.1	<>	na	Primary Assembly	161855599	na
SUPER_2	assembled-molecule	2	Chromosome	OZ557552.1	<>	na	Primary Assembly	126647552	na
SUPER_3	assembled-molecule	3	Chromosome	OZ557553.1	<>	na	Primary Assembly	121600371	na
SUPER_4	assembled-molecule	4	Chromosome	OZ557554.1	<>	na	Primary Assembly	78263737	na
SUPER_5	assembled-molecule	5	Chromosome	OZ557555.1	<>	na	Primary Assembly	75809396	na
SUPER_6	assembled-molecule	6	Chromosome	OZ557556.1	<>	na	Primary Assembly	66727694	na
SUPER_7	assembled-molecule	7	Chromosome	OZ557557.1	<>	na	Primary Assembly	38960648	na
SUPER_8	assembled-molecule	8	Chromosome	OZ557558.1	<>	na	Primary Assembly	33197905	na
SUPER_9	assembled-molecule	9	Chromosome	OZ557559.1	<>	na	Primary Assembly	32486039	na
SUPER_10	assembled-molecule	10	Chromosome	OZ557560.1	<>	na	Primary Assembly	32090185	na
SUPER_11	assembled-molecule	11	Chromosome	OZ557561.1	<>	na	Primary Assembly	26298400	na
SUPER_12	assembled-molecule	12	Chromosome	OZ557562.1	<>	na	Primary Assembly	25388285	na
SUPER_13	assembled-molecule	13	Chromosome	OZ557563.1	<>	na	Primary Assembly	24911000	na
SUPER_14	assembled-molecule	14	Chromosome	OZ557564.1	<>	na	Primary Assembly	22432304	na
SUPER_15	assembled-molecule	15	Chromosome	OZ557565.1	<>	na	Primary Assembly	22018243	na
SUPER_16	assembled-molecule	16	Chromosome	OZ557566.1	<>	na	Primary Assembly	19286000	na
SUPER_17	assembled-molecule	17	Chromosome	OZ557567.1	<>	na	Primary Assembly	17666274	na
SUPER_18	assembled-molecule	18	Chromosome	OZ557568.1	<>	na	Primary Assembly	16626000	na
SUPER_19	assembled-molecule	19	Chromosome	OZ557569.1	<>	na	Primary Assembly	13979439	na
SUPER_20	assembled-molecule	20	Chromosome	OZ557570.1	<>	na	Primary Assembly	13444000	na
SUPER_21	assembled-molecule	21	Chromosome	OZ557571.1	<>	na	Primary Assembly	11453000	na
SUPER_22	assembled-molecule	22	Chromosome	OZ557572.1	<>	na	Primary Assembly	10067872	na
SUPER_23	assembled-molecule	23	Chromosome	OZ557573.1	<>	na	Primary Assembly	9790000	na
SUPER_24	assembled-molecule	24	Chromosome	OZ557574.1	<>	na	Primary Assembly	8770000	na
SUPER_25	assembled-molecule	25	Chromosome	OZ557575.1	<>	na	Primary Assembly	8695216	na
SUPER_26	assembled-molecule	26	Chromosome	OZ557576.1	<>	na	Primary Assembly	7991397	na
SUPER_27	assembled-molecule	27	Chromosome	OZ557577.1	<>	na	Primary Assembly	7794700	na
SUPER_28	assembled-molecule	28	Chromosome	OZ557578.1	<>	na	Primary Assembly	7403000	na
SUPER_29	assembled-molecule	29	Chromosome	OZ557579.1	<>	na	Primary Assembly	7367000	na
SUPER_30	assembled-molecule	30	Chromosome	OZ557580.1	<>	na	Primary Assembly	7224009	na
SUPER_31	assembled-molecule	31	Chromosome	OZ557581.1	<>	na	Primary Assembly	7151316	na
SUPER_32	assembled-molecule	32	Chromosome	OZ557582.1	<>	na	Primary Assembly	7072884	na
SUPER_33	assembled-molecule	33	Chromosome	OZ557583.1	<>	na	Primary Assembly	6882677	na
SUPER_34	assembled-molecule	34	Chromosome	OZ557584.1	<>	na	Primary Assembly	6565079	na
SUPER_35	assembled-molecule	35	Chromosome	OZ557585.1	<>	na	Primary Assembly	6462000	na
SUPER_36	assembled-molecule	36	Chromosome	OZ557586.1	<>	na	Primary Assembly	5986834	na
SUPER_37	assembled-molecule	37	Chromosome	OZ557587.1	<>	na	Primary Assembly	5952283	na
SUPER_38	assembled-molecule	38	Chromosome	OZ557588.1	<>	na	Primary Assembly	5848222	na
SUPER_39	assembled-molecule	39	Chromosome	OZ557589.1	<>	na	Primary Assembly	5351095	na
SUPER_40	assembled-molecule	40	Chromosome	OZ557590.1	<>	na	Primary Assembly	3994000	na
SUPER_W	assembled-molecule	W	Chromosome	OZ557591.1	<>	na	Primary Assembly	29581891	na
SUPER_Z	assembled-molecule	Z	Chromosome	OZ557592.1	<>	na	Primary Assembly	86595399	na
SUPER_W_unloc_1	unlocalized-scaffold	W	Chromosome	CGBMNH010000001.1	<>	na	Primary Assembly	727844	na
HAP1_SCAFFOLD_57	unplaced-scaffold	na	na	CGBMNH010000002.1	<>	na	Primary Assembly	1785000	na
HAP1_SCAFFOLD_60	unplaced-scaffold	na	na	CGBMNH010000003.1	<>	na	Primary Assembly	1509000	na
HAP1_SCAFFOLD_66	unplaced-scaffold	na	na	CGBMNH010000004.1	<>	na	Primary Assembly	875012	na
HAP1_SCAFFOLD_69	unplaced-scaffold	na	na	CGBMNH010000005.1	<>	na	Primary Assembly	793581	na
HAP1_SCAFFOLD_70	unplaced-scaffold	na	na	CGBMNH010000006.1	<>	na	Primary Assembly	722457	na
HAP1_SCAFFOLD_71	unplaced-scaffold	na	na	CGBMNH010000007.1	<>	na	Primary Assembly	699271	na
HAP1_SCAFFOLD_73	unplaced-scaffold	na	na	CGBMNH010000008.1	<>	na	Primary Assembly	626314	na
HAP1_SCAFFOLD_74	unplaced-scaffold	na	na	CGBMNH010000009.1	<>	na	Primary Assembly	579000	na
HAP1_SCAFFOLD_81	unplaced-scaffold	na	na	CGBMNH010000010.1	<>	na	Primary Assembly	365000	na
HAP1_SCAFFOLD_82	unplaced-scaffold	na	na	CGBMNH010000011.1	<>	na	Primary Assembly	331000	na
HAP1_SCAFFOLD_83	unplaced-scaffold	na	na	CGBMNH010000012.1	<>	na	Primary Assembly	330000	na
HAP1_SCAFFOLD_84	unplaced-scaffold	na	na	CGBMNH010000013.1	<>	na	Primary Assembly	315000	na
HAP1_SCAFFOLD_85	unplaced-scaffold	na	na	CGBMNH010000014.1	<>	na	Primary Assembly	305000	na
HAP1_SCAFFOLD_88	unplaced-scaffold	na	na	CGBMNH010000015.1	<>	na	Primary Assembly	272841	na
HAP1_SCAFFOLD_89	unplaced-scaffold	na	na	CGBMNH010000016.1	<>	na	Primary Assembly	270843	na
HAP1_SCAFFOLD_90	unplaced-scaffold	na	na	CGBMNH010000017.1	<>	na	Primary Assembly	269059	na
HAP1_SCAFFOLD_91	unplaced-scaffold	na	na	CGBMNH010000018.1	<>	na	Primary Assembly	267000	na
HAP1_SCAFFOLD_92	unplaced-scaffold	na	na	CGBMNH010000019.1	<>	na	Primary Assembly	266685	na
HAP1_SCAFFOLD_94	unplaced-scaffold	na	na	CGBMNH010000020.1	<>	na	Primary Assembly	252000	na
HAP1_SCAFFOLD_96	unplaced-scaffold	na	na	CGBMNH010000021.1	<>	na	Primary Assembly	247000	na
HAP1_SCAFFOLD_97	unplaced-scaffold	na	na	CGBMNH010000022.1	<>	na	Primary Assembly	244100	na
HAP1_SCAFFOLD_98	unplaced-scaffold	na	na	CGBMNH010000023.1	<>	na	Primary Assembly	243000	na
HAP1_SCAFFOLD_100	unplaced-scaffold	na	na	CGBMNH010000024.1	<>	na	Primary Assembly	232000	na
HAP1_SCAFFOLD_101	unplaced-scaffold	na	na	CGBMNH010000025.1	<>	na	Primary Assembly	231562	na
HAP1_SCAFFOLD_102	unplaced-scaffold	na	na	CGBMNH010000026.1	<>	na	Primary Assembly	223000	na
HAP1_SCAFFOLD_105	unplaced-scaffold	na	na	CGBMNH010000027.1	<>	na	Primary Assembly	214000	na
HAP1_SCAFFOLD_106	unplaced-scaffold	na	na	CGBMNH010000028.1	<>	na	Primary Assembly	200000	na
HAP1_SCAFFOLD_108	unplaced-scaffold	na	na	CGBMNH010000029.1	<>	na	Primary Assembly	192536	na
HAP1_SCAFFOLD_109	unplaced-scaffold	na	na	CGBMNH010000030.1	<>	na	Primary Assembly	189935	na
HAP1_SCAFFOLD_111	unplaced-scaffold	na	na	CGBMNH010000031.1	<>	na	Primary Assembly	182000	na
HAP1_SCAFFOLD_112	unplaced-scaffold	na	na	CGBMNH010000032.1	<>	na	Primary Assembly	181000	na
HAP1_SCAFFOLD_113	unplaced-scaffold	na	na	CGBMNH010000033.1	<>	na	Primary Assembly	177000	na
HAP1_SCAFFOLD_114	unplaced-scaffold	na	na	CGBMNH010000034.1	<>	na	Primary Assembly	159000	na
HAP1_SCAFFOLD_115	unplaced-scaffold	na	na	CGBMNH010000035.1	<>	na	Primary Assembly	152544	na
HAP1_SCAFFOLD_116	unplaced-scaffold	na	na	CGBMNH010000036.1	<>	na	Primary Assembly	143000	na
HAP1_SCAFFOLD_118	unplaced-scaffold	na	na	CGBMNH010000037.1	<>	na	Primary Assembly	132000	na
HAP1_SCAFFOLD_119	unplaced-scaffold	na	na	CGBMNH010000038.1	<>	na	Primary Assembly	128000	na
HAP1_SCAFFOLD_120	unplaced-scaffold	na	na	CGBMNH010000039.1	<>	na	Primary Assembly	114000	na
HAP1_SCAFFOLD_121	unplaced-scaffold	na	na	CGBMNH010000040.1	<>	na	Primary Assembly	108000	na
HAP1_SCAFFOLD_122	unplaced-scaffold	na	na	CGBMNH010000041.1	<>	na	Primary Assembly	106000	na
HAP1_SCAFFOLD_123	unplaced-scaffold	na	na	CGBMNH010000042.1	<>	na	Primary Assembly	104000	na
HAP1_SCAFFOLD_124	unplaced-scaffold	na	na	CGBMNH010000043.1	<>	na	Primary Assembly	101000	na
HAP1_SCAFFOLD_125	unplaced-scaffold	na	na	CGBMNH010000044.1	<>	na	Primary Assembly	98297	na
HAP1_SCAFFOLD_126	unplaced-scaffold	na	na	CGBMNH010000045.1	<>	na	Primary Assembly	98000	na
HAP1_SCAFFOLD_127	unplaced-scaffold	na	na	CGBMNH010000046.1	<>	na	Primary Assembly	98000	na
HAP1_SCAFFOLD_128	unplaced-scaffold	na	na	CGBMNH010000047.1	<>	na	Primary Assembly	96000	na
HAP1_SCAFFOLD_129	unplaced-scaffold	na	na	CGBMNH010000048.1	<>	na	Primary Assembly	93000	na
HAP1_SCAFFOLD_130	unplaced-scaffold	na	na	CGBMNH010000049.1	<>	na	Primary Assembly	91000	na
HAP1_SCAFFOLD_131	unplaced-scaffold	na	na	CGBMNH010000050.1	<>	na	Primary Assembly	88000	na
HAP1_SCAFFOLD_132	unplaced-scaffold	na	na	CGBMNH010000051.1	<>	na	Primary Assembly	87000	na
HAP1_SCAFFOLD_133	unplaced-scaffold	na	na	CGBMNH010000052.1	<>	na	Primary Assembly	83287	na
HAP1_SCAFFOLD_134	unplaced-scaffold	na	na	CGBMNH010000053.1	<>	na	Primary Assembly	74602	na
HAP1_SCAFFOLD_135	unplaced-scaffold	na	na	CGBMNH010000054.1	<>	na	Primary Assembly	70595	na
HAP1_SCAFFOLD_136	unplaced-scaffold	na	na	CGBMNH010000055.1	<>	na	Primary Assembly	70179	na
HAP1_SCAFFOLD_137	unplaced-scaffold	na	na	CGBMNH010000056.1	<>	na	Primary Assembly	62884	na
HAP1_SCAFFOLD_138	unplaced-scaffold	na	na	CGBMNH010000057.1	<>	na	Primary Assembly	61310	na
HAP1_SCAFFOLD_140	unplaced-scaffold	na	na	CGBMNH010000058.1	<>	na	Primary Assembly	51000	na
HAP1_SCAFFOLD_142	unplaced-scaffold	na	na	CGBMNH010000059.1	<>	na	Primary Assembly	17668	na
HAP1_SCAFFOLD_143	unplaced-scaffold	na	na	CGBMNH010000060.1	<>	na	Primary Assembly	15000	na
scaffold_MT_1	assembled-molecule	MT	Mitochondrion	OZ557593.1	<>	na	non-nuclear	16817	na