# Assembly name: bMusSti1.hap1.1 # Organism name: Muscicapa striata (spotted flycatcher) # Taxid: 1293958 # BioSample: SAMEA118680484 # BioProject: PRJEB124029 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2026-09-09 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CGBCBO01 # Assembly method: various # Genome coverage: 32x # Sequencing technology: Oxford Nanopore,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_988136345.1 # Linked assembly: GCA_988136365.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1_HAP1 assembled-molecule 1 Chromosome OZ531778.1 <> na Primary Assembly 160340308 na SUPER_2_HAP1 assembled-molecule 2 Chromosome OZ531779.1 <> na Primary Assembly 120387181 na SUPER_3_HAP1 assembled-molecule 3 Chromosome OZ531780.1 <> na Primary Assembly 119122257 na SUPER_4_HAP1 assembled-molecule 4 Chromosome OZ531781.1 <> na Primary Assembly 80444776 na SUPER_5_HAP1 assembled-molecule 5 Chromosome OZ531782.1 <> na Primary Assembly 77877732 na SUPER_6_HAP1 assembled-molecule 6 Chromosome OZ531783.1 <> na Primary Assembly 66891566 na SUPER_7_HAP1 assembled-molecule 7 Chromosome OZ531784.1 <> na Primary Assembly 44684014 na SUPER_8_HAP1 assembled-molecule 8 Chromosome OZ531785.1 <> na Primary Assembly 44087641 na SUPER_9_HAP1 assembled-molecule 9 Chromosome OZ531786.1 <> na Primary Assembly 41565542 na SUPER_10_HAP1 assembled-molecule 10 Chromosome OZ531787.1 <> na Primary Assembly 39007173 na SUPER_11_HAP1 assembled-molecule 11 Chromosome OZ531788.1 <> na Primary Assembly 37473536 na SUPER_12_HAP1 assembled-molecule 12 Chromosome OZ531789.1 <> na Primary Assembly 35791052 na SUPER_13_HAP1 assembled-molecule 13 Chromosome OZ531790.1 <> na Primary Assembly 33161770 na SUPER_14_HAP1 assembled-molecule 14 Chromosome OZ531791.1 <> na Primary Assembly 25644030 na SUPER_15_HAP1 assembled-molecule 15 Chromosome OZ531792.1 <> na Primary Assembly 23751299 na SUPER_16_HAP1 assembled-molecule 16 Chromosome OZ531793.1 <> na Primary Assembly 22671880 na SUPER_17_HAP1 assembled-molecule 17 Chromosome OZ531794.1 <> na Primary Assembly 22588754 na SUPER_18_HAP1 assembled-molecule 18 Chromosome OZ531795.1 <> na Primary Assembly 20940900 na SUPER_19_HAP1 assembled-molecule 19 Chromosome OZ531796.1 <> na Primary Assembly 20427664 na SUPER_20_HAP1 assembled-molecule 20 Chromosome OZ531797.1 <> na Primary Assembly 18617224 na SUPER_21_HAP1 assembled-molecule 21 Chromosome OZ531798.1 <> na Primary Assembly 17831146 na SUPER_22_HAP1 assembled-molecule 22 Chromosome OZ531799.1 <> na Primary Assembly 17557691 na SUPER_23_HAP1 assembled-molecule 23 Chromosome OZ531800.1 <> na Primary Assembly 17513141 na SUPER_24_HAP1 assembled-molecule 24 Chromosome OZ531801.1 <> na Primary Assembly 16536152 na SUPER_25_HAP1 assembled-molecule 25 Chromosome OZ531802.1 <> na Primary Assembly 16480821 na SUPER_26_HAP1 assembled-molecule 26 Chromosome OZ531803.1 <> na Primary Assembly 16442499 na SUPER_27_HAP1 assembled-molecule 27 Chromosome OZ531804.1 <> na Primary Assembly 16180293 na SUPER_28_HAP1 assembled-molecule 28 Chromosome OZ531805.1 <> na Primary Assembly 14914556 na SUPER_29_HAP1 assembled-molecule 29 Chromosome OZ531806.1 <> na Primary Assembly 14831881 na SUPER_30_HAP1 assembled-molecule 30 Chromosome OZ531807.1 <> na Primary Assembly 14705141 na SUPER_31_HAP1 assembled-molecule 31 Chromosome OZ531808.1 <> na Primary Assembly 13942094 na SUPER_32_HAP1 assembled-molecule 32 Chromosome OZ531809.1 <> na Primary Assembly 13703163 na SUPER_33_HAP1 assembled-molecule 33 Chromosome OZ531810.1 <> na Primary Assembly 13147494 na SUPER_34_HAP1 assembled-molecule 34 Chromosome OZ531811.1 <> na Primary Assembly 9355543 na SUPER_35_HAP1 assembled-molecule 35 Chromosome OZ531812.1 <> na Primary Assembly 8821201 na SUPER_36_HAP1 assembled-molecule 36 Chromosome OZ531813.1 <> na Primary Assembly 6639551 na SUPER_37_HAP1 assembled-molecule 37 Chromosome OZ531814.1 <> na Primary Assembly 6530972 na SUPER_38_HAP1 assembled-molecule 38 Chromosome OZ531815.1 <> na Primary Assembly 6424851 na SUPER_Z_HAP1 assembled-molecule Z Chromosome OZ531816.1 <> na Primary Assembly 100370768 na HAP1_SCAFFOLD_54 unplaced-scaffold na na CGBCBO010000001.1 <> na Primary Assembly 6788528 na HAP1_SCAFFOLD_55 unplaced-scaffold na na CGBCBO010000002.1 <> na Primary Assembly 6371595 na HAP1_SCAFFOLD_57 unplaced-scaffold na na CGBCBO010000003.1 <> na Primary Assembly 5889857 na HAP1_SCAFFOLD_58 unplaced-scaffold na na CGBCBO010000004.1 <> na Primary Assembly 5519253 na HAP1_SCAFFOLD_60 unplaced-scaffold na na CGBCBO010000005.1 <> na Primary Assembly 5243780 na HAP1_SCAFFOLD_65 unplaced-scaffold na na CGBCBO010000006.1 <> na Primary Assembly 4212473 na HAP1_SCAFFOLD_70 unplaced-scaffold na na CGBCBO010000007.1 <> na Primary Assembly 3902209 na HAP1_SCAFFOLD_71 unplaced-scaffold na na CGBCBO010000008.1 <> na Primary Assembly 3780692 na HAP1_SCAFFOLD_72 unplaced-scaffold na na CGBCBO010000009.1 <> na Primary Assembly 3648464 na HAP1_SCAFFOLD_79 unplaced-scaffold na na CGBCBO010000010.1 <> na Primary Assembly 3122972 na HAP1_SCAFFOLD_84 unplaced-scaffold na na CGBCBO010000011.1 <> na Primary Assembly 2775897 na HAP1_SCAFFOLD_85 unplaced-scaffold na na CGBCBO010000012.1 <> na Primary Assembly 2733019 na HAP1_SCAFFOLD_89 unplaced-scaffold na na CGBCBO010000013.1 <> na Primary Assembly 2328938 na HAP1_SCAFFOLD_93 unplaced-scaffold na na CGBCBO010000014.1 <> na Primary Assembly 2142063 na HAP1_SCAFFOLD_94 unplaced-scaffold na na CGBCBO010000015.1 <> na Primary Assembly 2138155 na HAP1_SCAFFOLD_96 unplaced-scaffold na na CGBCBO010000016.1 <> na Primary Assembly 2044116 na HAP1_SCAFFOLD_98 unplaced-scaffold na na CGBCBO010000017.1 <> na Primary Assembly 1992400 na HAP1_SCAFFOLD_99 unplaced-scaffold na na CGBCBO010000018.1 <> na Primary Assembly 1971759 na HAP1_SCAFFOLD_100 unplaced-scaffold na na CGBCBO010000019.1 <> na Primary Assembly 1950570 na HAP1_SCAFFOLD_103 unplaced-scaffold na na CGBCBO010000020.1 <> na Primary Assembly 1857686 na HAP1_SCAFFOLD_109 unplaced-scaffold na na CGBCBO010000021.1 <> na Primary Assembly 1685390 na HAP1_SCAFFOLD_110 unplaced-scaffold na na CGBCBO010000022.1 <> na Primary Assembly 1645406 na HAP1_SCAFFOLD_113 unplaced-scaffold na na CGBCBO010000023.1 <> na Primary Assembly 1515163 na HAP1_SCAFFOLD_129 unplaced-scaffold na na CGBCBO010000024.1 <> na Primary Assembly 1201532 na HAP1_SCAFFOLD_132 unplaced-scaffold na na CGBCBO010000025.1 <> na Primary Assembly 1162070 na HAP1_SCAFFOLD_133 unplaced-scaffold na na CGBCBO010000026.1 <> na Primary Assembly 1138517 na HAP1_SCAFFOLD_134 unplaced-scaffold na na CGBCBO010000027.1 <> na Primary Assembly 1125466 na HAP1_SCAFFOLD_135 unplaced-scaffold na na CGBCBO010000028.1 <> na Primary Assembly 1117670 na HAP1_SCAFFOLD_136 unplaced-scaffold na na CGBCBO010000029.1 <> na Primary Assembly 1096760 na HAP1_SCAFFOLD_137 unplaced-scaffold na na CGBCBO010000030.1 <> na Primary Assembly 1077503 na HAP1_SCAFFOLD_140 unplaced-scaffold na na CGBCBO010000031.1 <> na Primary Assembly 1041955 na HAP1_SCAFFOLD_144 unplaced-scaffold na na CGBCBO010000032.1 <> na Primary Assembly 960037 na HAP1_SCAFFOLD_146 unplaced-scaffold na na CGBCBO010000033.1 <> na Primary Assembly 954619 na HAP1_SCAFFOLD_149 unplaced-scaffold na na CGBCBO010000034.1 <> na Primary Assembly 912417 na HAP1_SCAFFOLD_151 unplaced-scaffold na na CGBCBO010000035.1 <> na Primary Assembly 872961 na HAP1_SCAFFOLD_152 unplaced-scaffold na na CGBCBO010000036.1 <> na Primary Assembly 862335 na HAP1_SCAFFOLD_153 unplaced-scaffold na na CGBCBO010000037.1 <> na Primary Assembly 854169 na HAP1_SCAFFOLD_163 unplaced-scaffold na na CGBCBO010000038.1 <> na Primary Assembly 753081 na HAP1_SCAFFOLD_165 unplaced-scaffold na na CGBCBO010000039.1 <> na Primary Assembly 726485 na HAP1_SCAFFOLD_167 unplaced-scaffold na na CGBCBO010000040.1 <> na Primary Assembly 694420 na HAP1_SCAFFOLD_169 unplaced-scaffold na na CGBCBO010000041.1 <> na Primary Assembly 689326 na HAP1_SCAFFOLD_170 unplaced-scaffold na na CGBCBO010000042.1 <> na Primary Assembly 687530 na HAP1_SCAFFOLD_171 unplaced-scaffold na na CGBCBO010000043.1 <> na Primary Assembly 670673 na HAP1_SCAFFOLD_172 unplaced-scaffold na na CGBCBO010000044.1 <> na Primary Assembly 669105 na HAP1_SCAFFOLD_173 unplaced-scaffold na na CGBCBO010000045.1 <> na Primary Assembly 661980 na HAP1_SCAFFOLD_174 unplaced-scaffold na na CGBCBO010000046.1 <> na Primary Assembly 660970 na HAP1_SCAFFOLD_175 unplaced-scaffold na na CGBCBO010000047.1 <> na Primary Assembly 647345 na HAP1_SCAFFOLD_176 unplaced-scaffold na na CGBCBO010000048.1 <> na Primary Assembly 646309 na HAP1_SCAFFOLD_178 unplaced-scaffold na na CGBCBO010000049.1 <> na Primary Assembly 642881 na HAP1_SCAFFOLD_181 unplaced-scaffold na na CGBCBO010000050.1 <> na Primary Assembly 636053 na HAP1_SCAFFOLD_182 unplaced-scaffold na na CGBCBO010000051.1 <> na Primary Assembly 631930 na HAP1_SCAFFOLD_183 unplaced-scaffold na na CGBCBO010000052.1 <> na Primary Assembly 630592 na HAP1_SCAFFOLD_186 unplaced-scaffold na na CGBCBO010000053.1 <> na Primary Assembly 590174 na HAP1_SCAFFOLD_187 unplaced-scaffold na na CGBCBO010000054.1 <> na Primary Assembly 589646 na HAP1_SCAFFOLD_188 unplaced-scaffold na na CGBCBO010000055.1 <> na Primary Assembly 578321 na HAP1_SCAFFOLD_190 unplaced-scaffold na na CGBCBO010000056.1 <> na Primary Assembly 562040 na HAP1_SCAFFOLD_192 unplaced-scaffold na na CGBCBO010000057.1 <> na Primary Assembly 541516 na HAP1_SCAFFOLD_193 unplaced-scaffold na na CGBCBO010000058.1 <> na Primary Assembly 534620 na HAP1_SCAFFOLD_194 unplaced-scaffold na na CGBCBO010000059.1 <> na Primary Assembly 530063 na HAP1_SCAFFOLD_195 unplaced-scaffold na na CGBCBO010000060.1 <> na Primary Assembly 517320 na HAP1_SCAFFOLD_198 unplaced-scaffold na na CGBCBO010000061.1 <> na Primary Assembly 476890 na HAP1_SCAFFOLD_199 unplaced-scaffold na na CGBCBO010000062.1 <> na Primary Assembly 476468 na HAP1_SCAFFOLD_200 unplaced-scaffold na na CGBCBO010000063.1 <> na Primary Assembly 474881 na HAP1_SCAFFOLD_201 unplaced-scaffold na na CGBCBO010000064.1 <> na Primary Assembly 471208 na HAP1_SCAFFOLD_202 unplaced-scaffold na na CGBCBO010000065.1 <> na Primary Assembly 466440 na HAP1_SCAFFOLD_203 unplaced-scaffold na na CGBCBO010000066.1 <> na Primary Assembly 448163 na HAP1_SCAFFOLD_204 unplaced-scaffold na na CGBCBO010000067.1 <> na Primary Assembly 445499 na HAP1_SCAFFOLD_206 unplaced-scaffold na na CGBCBO010000068.1 <> na Primary Assembly 424298 na HAP1_SCAFFOLD_207 unplaced-scaffold na na CGBCBO010000069.1 <> na Primary Assembly 414316 na HAP1_SCAFFOLD_210 unplaced-scaffold na na CGBCBO010000070.1 <> na Primary Assembly 388427 na HAP1_SCAFFOLD_211 unplaced-scaffold na na CGBCBO010000071.1 <> na Primary Assembly 368291 na HAP1_SCAFFOLD_212 unplaced-scaffold na na CGBCBO010000072.1 <> na Primary Assembly 363955 na HAP1_SCAFFOLD_213 unplaced-scaffold na na CGBCBO010000073.1 <> na Primary Assembly 359183 na HAP1_SCAFFOLD_214 unplaced-scaffold na na CGBCBO010000074.1 <> na Primary Assembly 351926 na HAP1_SCAFFOLD_217 unplaced-scaffold na na CGBCBO010000075.1 <> na Primary Assembly 314288 na HAP1_SCAFFOLD_218 unplaced-scaffold na na CGBCBO010000076.1 <> na Primary Assembly 295683 na HAP1_SCAFFOLD_219 unplaced-scaffold na na CGBCBO010000077.1 <> na Primary Assembly 293093 na HAP1_SCAFFOLD_220 unplaced-scaffold na na CGBCBO010000078.1 <> na Primary Assembly 289349 na HAP1_SCAFFOLD_221 unplaced-scaffold na na CGBCBO010000079.1 <> na Primary Assembly 276732 na HAP1_SCAFFOLD_222 unplaced-scaffold na na CGBCBO010000080.1 <> na Primary Assembly 273015 na HAP1_SCAFFOLD_223 unplaced-scaffold na na CGBCBO010000081.1 <> na Primary Assembly 264089 na HAP1_SCAFFOLD_225 unplaced-scaffold na na CGBCBO010000082.1 <> na Primary Assembly 254565 na HAP1_SCAFFOLD_226 unplaced-scaffold na na CGBCBO010000083.1 <> na Primary Assembly 247887 na HAP1_SCAFFOLD_227 unplaced-scaffold na na CGBCBO010000084.1 <> na Primary Assembly 242469 na HAP1_SCAFFOLD_228 unplaced-scaffold na na CGBCBO010000085.1 <> na Primary Assembly 242149 na HAP1_SCAFFOLD_230 unplaced-scaffold na na CGBCBO010000086.1 <> na Primary Assembly 227913 na HAP1_SCAFFOLD_231 unplaced-scaffold na na CGBCBO010000087.1 <> na Primary Assembly 227792 na HAP1_SCAFFOLD_232 unplaced-scaffold na na CGBCBO010000088.1 <> na Primary Assembly 225433 na HAP1_SCAFFOLD_233 unplaced-scaffold na na CGBCBO010000089.1 <> na Primary Assembly 223183 na HAP1_SCAFFOLD_234 unplaced-scaffold na na CGBCBO010000090.1 <> na Primary Assembly 220475 na HAP1_SCAFFOLD_235 unplaced-scaffold na na CGBCBO010000091.1 <> na Primary Assembly 211863 na HAP1_SCAFFOLD_236 unplaced-scaffold na na CGBCBO010000092.1 <> na Primary Assembly 209718 na HAP1_SCAFFOLD_237 unplaced-scaffold na na CGBCBO010000093.1 <> na Primary Assembly 208429 na HAP1_SCAFFOLD_238 unplaced-scaffold na na CGBCBO010000094.1 <> na Primary Assembly 207362 na HAP1_SCAFFOLD_239 unplaced-scaffold na na CGBCBO010000095.1 <> na Primary Assembly 203469 na HAP1_SCAFFOLD_240 unplaced-scaffold na na CGBCBO010000096.1 <> na Primary Assembly 201463 na HAP1_SCAFFOLD_241 unplaced-scaffold na na CGBCBO010000097.1 <> na Primary Assembly 200278 na HAP1_SCAFFOLD_242 unplaced-scaffold na na CGBCBO010000098.1 <> na Primary Assembly 190307 na HAP1_SCAFFOLD_243 unplaced-scaffold na na CGBCBO010000099.1 <> na Primary Assembly 186464 na HAP1_SCAFFOLD_244 unplaced-scaffold na na CGBCBO010000100.1 <> na Primary Assembly 175949 na HAP1_SCAFFOLD_245 unplaced-scaffold na na CGBCBO010000101.1 <> na Primary Assembly 171649 na HAP1_SCAFFOLD_246 unplaced-scaffold na na CGBCBO010000102.1 <> na Primary Assembly 170764 na HAP1_SCAFFOLD_247 unplaced-scaffold na na CGBCBO010000103.1 <> na Primary Assembly 167942 na HAP1_SCAFFOLD_248 unplaced-scaffold na na CGBCBO010000104.1 <> na Primary Assembly 165694 na HAP1_SCAFFOLD_249 unplaced-scaffold na na CGBCBO010000105.1 <> na Primary Assembly 155614 na HAP1_SCAFFOLD_250 unplaced-scaffold na na CGBCBO010000106.1 <> na Primary Assembly 155178 na HAP1_SCAFFOLD_251 unplaced-scaffold na na CGBCBO010000107.1 <> na Primary Assembly 154221 na HAP1_SCAFFOLD_252 unplaced-scaffold na na CGBCBO010000108.1 <> na Primary Assembly 150631 na HAP1_SCAFFOLD_253 unplaced-scaffold na na CGBCBO010000109.1 <> na Primary Assembly 144960 na HAP1_SCAFFOLD_254 unplaced-scaffold na na CGBCBO010000110.1 <> na Primary Assembly 143906 na HAP1_SCAFFOLD_255 unplaced-scaffold na na CGBCBO010000111.1 <> na Primary Assembly 140644 na HAP1_SCAFFOLD_256 unplaced-scaffold na na CGBCBO010000112.1 <> na Primary Assembly 119572 na HAP1_SCAFFOLD_257 unplaced-scaffold na na CGBCBO010000113.1 <> na Primary Assembly 103421 na HAP1_SCAFFOLD_258 unplaced-scaffold na na CGBCBO010000114.1 <> na Primary Assembly 100296 na HAP1_SCAFFOLD_259 unplaced-scaffold na na CGBCBO010000115.1 <> na Primary Assembly 88785 na HAP1_SCAFFOLD_260 unplaced-scaffold na na CGBCBO010000116.1 <> na Primary Assembly 76605 na HAP1_SCAFFOLD_261 unplaced-scaffold na na CGBCBO010000117.1 <> na Primary Assembly 75731 na HAP1_SCAFFOLD_262 unplaced-scaffold na na CGBCBO010000118.1 <> na Primary Assembly 73440 na HAP1_SCAFFOLD_263 unplaced-scaffold na na CGBCBO010000119.1 <> na Primary Assembly 67426 na HAP1_SCAFFOLD_264 unplaced-scaffold na na CGBCBO010000120.1 <> na Primary Assembly 66915 na HAP1_SCAFFOLD_265 unplaced-scaffold na na CGBCBO010000121.1 <> na Primary Assembly 42243 na HAP1_SCAFFOLD_266 unplaced-scaffold na na CGBCBO010000122.1 <> na Primary Assembly 19748 na HAP1_SCAFFOLD_268 unplaced-scaffold na na CGBCBO010000123.1 <> na Primary Assembly 12259 na HAP1_SCAFFOLD_269 unplaced-scaffold na na CGBCBO010000124.1 <> na Primary Assembly 9488 na HAP1_SCAFFOLD_270 unplaced-scaffold na na CGBCBO010000125.1 <> na Primary Assembly 7044 na HAP1_SCAFFOLD_271 unplaced-scaffold na na CGBCBO010000126.1 <> na Primary Assembly 4853 na HAP1_SCAFFOLD_272 unplaced-scaffold na na CGBCBO010000127.1 <> na Primary Assembly 4734 na scaffold_MT_1 assembled-molecule MT Mitochondrion OZ531817.1 <> na non-nuclear 18087 na