The repeat files provided for this assembly were generated using RepeatMasker.
  Smit, AFA, Hubley, R & Green, P.,
  RepeatMasker version 4.2.4
  1996-2026 <http://www.repeatmasker.org>.

VERSION:
RepeatMasker version 4.2.4
Search Engine: NCBI/RMBLAST [ 2.17.1+ ]

Using FamDB: /hive/data/outside/FamDB-3.0.0
  Title    : Dfam
  Version  : 4.0
  Date     : 2026-05-22
  Families : 7,627,752

Species/Taxa Search:
  Ciliophora [NCBI Taxonomy ID: 5878]

Including curated and uncurated families:
  9/9 families in ancestor taxa; 1282/1282 lineage-specific families

Building species libraries in: /hive/data/outside/RepeatMasker/RepeatMasker-4.2.4/Libraries/CONS-Dfam_4.0/ciliata_wunc
RepeatMasker version 4.2.4
# FamDB version 3.0.0 June 2026
# RepeatMasker engine: -uncurated -engine rmblast -pa 1
# RepeatMasker library options: -species 'Ciliata'

PARAMETERS:
/hive/data/outside/RepeatMasker/RepeatMasker-4.2.4/RepeatMasker -uncurated -engine rmblast -pa 1 -align -species 'Ciliata'