# Assembly name:  bMotFla1.hap1.1
# Organism name:  Motacilla flava (birds)
# Taxid:          180448
# BioSample:      SAMEA118680314
# BioProject:     PRJEB122731
# Submitter:      WELLCOME SANGER INSTITUTE
# Date:           2026-09-02
# Assembly type:  haploid (haplotype 1)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    CFWXSX01
# Assembly method: various
# Genome coverage: 63x
# Sequencing technology: Oxford Nanopore,Arima2
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_987196375.1
# Linked assembly: GCA_987197035.1 (haplotype 2)
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1_HAP1	assembled-molecule	1	Chromosome	OZ499305.1	<>	na	Primary Assembly	157020941	na
SUPER_2_HAP1	assembled-molecule	2	Chromosome	OZ499306.1	<>	na	Primary Assembly	117607571	na
SUPER_3_HAP1	assembled-molecule	3	Chromosome	OZ499307.1	<>	na	Primary Assembly	117354765	na
SUPER_4_HAP1	assembled-molecule	4	Chromosome	OZ499308.1	<>	na	Primary Assembly	74060187	na
SUPER_5_HAP1	assembled-molecule	5	Chromosome	OZ499309.1	<>	na	Primary Assembly	73327407	na
SUPER_6_HAP1	assembled-molecule	6	Chromosome	OZ499310.1	<>	na	Primary Assembly	65090203	na
SUPER_7_HAP1	assembled-molecule	7	Chromosome	OZ499311.1	<>	na	Primary Assembly	43556220	na
SUPER_8_HAP1	assembled-molecule	8	Chromosome	OZ499312.1	<>	na	Primary Assembly	38416870	na
SUPER_9_HAP1	assembled-molecule	9	Chromosome	OZ499313.1	<>	na	Primary Assembly	33604442	na
SUPER_10_HAP1	assembled-molecule	10	Chromosome	OZ499314.1	<>	na	Primary Assembly	28363246	na
SUPER_11_HAP1	assembled-molecule	11	Chromosome	OZ499315.1	<>	na	Primary Assembly	23715443	na
SUPER_12_HAP1	assembled-molecule	12	Chromosome	OZ499316.1	<>	na	Primary Assembly	23484684	na
SUPER_13_HAP1	assembled-molecule	13	Chromosome	OZ499317.1	<>	na	Primary Assembly	23197893	na
SUPER_14_HAP1	assembled-molecule	14	Chromosome	OZ499318.1	<>	na	Primary Assembly	22148482	na
SUPER_15_HAP1	assembled-molecule	15	Chromosome	OZ499319.1	<>	na	Primary Assembly	20584979	na
SUPER_16_HAP1	assembled-molecule	16	Chromosome	OZ499320.1	<>	na	Primary Assembly	18889284	na
SUPER_17_HAP1	assembled-molecule	17	Chromosome	OZ499321.1	<>	na	Primary Assembly	17686089	na
SUPER_18_HAP1	assembled-molecule	18	Chromosome	OZ499322.1	<>	na	Primary Assembly	15985046	na
SUPER_19_HAP1	assembled-molecule	19	Chromosome	OZ499323.1	<>	na	Primary Assembly	15529981	na
SUPER_20_HAP1	assembled-molecule	20	Chromosome	OZ499324.1	<>	na	Primary Assembly	13445890	na
SUPER_21_HAP1	assembled-molecule	21	Chromosome	OZ499325.1	<>	na	Primary Assembly	13319834	na
SUPER_22_HAP1	assembled-molecule	22	Chromosome	OZ499326.1	<>	na	Primary Assembly	12861788	na
SUPER_23_HAP1	assembled-molecule	23	Chromosome	OZ499327.1	<>	na	Primary Assembly	12442768	na
SUPER_24_HAP1	assembled-molecule	24	Chromosome	OZ499328.1	<>	na	Primary Assembly	10182129	na
SUPER_25_HAP1	assembled-molecule	25	Chromosome	OZ499329.1	<>	na	Primary Assembly	9744582	na
SUPER_26_HAP1	assembled-molecule	26	Chromosome	OZ499330.1	<>	na	Primary Assembly	9662872	na
SUPER_27_HAP1	assembled-molecule	27	Chromosome	OZ499331.1	<>	na	Primary Assembly	9434973	na
SUPER_28_HAP1	assembled-molecule	28	Chromosome	OZ499332.1	<>	na	Primary Assembly	9087606	na
SUPER_29_HAP1	assembled-molecule	29	Chromosome	OZ499333.1	<>	na	Primary Assembly	9000637	na
SUPER_30_HAP1	assembled-molecule	30	Chromosome	OZ499334.1	<>	na	Primary Assembly	8850357	na
SUPER_31_HAP1	assembled-molecule	31	Chromosome	OZ499335.1	<>	na	Primary Assembly	8600482	na
SUPER_32_HAP1	assembled-molecule	32	Chromosome	OZ499336.1	<>	na	Primary Assembly	8489579	na
SUPER_33_HAP1	assembled-molecule	33	Chromosome	OZ499337.1	<>	na	Primary Assembly	8210327	na
SUPER_34_HAP1	assembled-molecule	34	Chromosome	OZ499338.1	<>	na	Primary Assembly	8130951	na
SUPER_35_HAP1	assembled-molecule	35	Chromosome	OZ499339.1	<>	na	Primary Assembly	7782414	na
SUPER_36_HAP1	assembled-molecule	36	Chromosome	OZ499340.1	<>	na	Primary Assembly	7323229	na
SUPER_37_HAP1	assembled-molecule	37	Chromosome	OZ499341.1	<>	na	Primary Assembly	7017069	na
SUPER_38_HAP1	assembled-molecule	38	Chromosome	OZ499342.1	<>	na	Primary Assembly	6547265	na
SUPER_39_HAP1	assembled-molecule	39	Chromosome	OZ499343.1	<>	na	Primary Assembly	6462548	na
SUPER_W_HAP1	assembled-molecule	W	Chromosome	OZ499344.1	<>	na	Primary Assembly	19066464	na
SUPER_Z_HAP1	assembled-molecule	Z	Chromosome	OZ499345.1	<>	na	Primary Assembly	82155484	na
HAP1_SCAFFOLD_47	unplaced-scaffold	na	na	CFWXSX010000001.1	<>	na	Primary Assembly	411797	na
HAP1_SCAFFOLD_49	unplaced-scaffold	na	na	CFWXSX010000002.1	<>	na	Primary Assembly	46375	na
HAP1_SCAFFOLD_51	unplaced-scaffold	na	na	CFWXSX010000003.1	<>	na	Primary Assembly	9099	na
HAP1_SCAFFOLD_52	unplaced-scaffold	na	na	CFWXSX010000004.1	<>	na	Primary Assembly	3820	na
scaffold_MT_1	assembled-molecule	MT	Mitochondrion	OZ499346.1	<>	na	non-nuclear	16832	na