# Assembly name: bAytFer1.hap2.1 # Organism name: Aythya ferina (common pochard) # Taxid: 219593 # BioSample: SAMEA112468034 # BioProject: PRJEB78493 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2024-07-30 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: CAXOSJ01 # Assembly method: various # Genome coverage: 122x # Sequencing technology: PacBio,Arima2 # GenBank assembly accession: GCA_964211795.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964211794.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 unplaced-scaffold na na CAXOSJ010000001.1 <> na Primary Assembly 207387564 na SUPER_2 unplaced-scaffold na na CAXOSJ010000002.1 <> na Primary Assembly 161470938 na SUPER_3 unplaced-scaffold na na CAXOSJ010000003.1 <> na Primary Assembly 121053116 na SUPER_4 unplaced-scaffold na na CAXOSJ010000004.1 <> na Primary Assembly 77419955 na SUPER_5 unplaced-scaffold na na CAXOSJ010000005.1 <> na Primary Assembly 65937327 na SUPER_6 unplaced-scaffold na na CAXOSJ010000006.1 <> na Primary Assembly 40998130 na SUPER_7 unplaced-scaffold na na CAXOSJ010000007.1 <> na Primary Assembly 38014631 na SUPER_8 unplaced-scaffold na na CAXOSJ010000008.1 <> na Primary Assembly 32537965 na SUPER_9 unplaced-scaffold na na CAXOSJ010000009.1 <> na Primary Assembly 28378714 na SUPER_10 unplaced-scaffold na na CAXOSJ010000010.1 <> na Primary Assembly 23102583 na SUPER_11 unplaced-scaffold na na CAXOSJ010000011.1 <> na Primary Assembly 22704231 na SUPER_12 unplaced-scaffold na na CAXOSJ010000012.1 <> na Primary Assembly 22243768 na SUPER_13 unplaced-scaffold na na CAXOSJ010000013.1 <> na Primary Assembly 22213959 na SUPER_14 unplaced-scaffold na na CAXOSJ010000014.1 <> na Primary Assembly 22101179 na SUPER_15 unplaced-scaffold na na CAXOSJ010000015.1 <> na Primary Assembly 18014895 na SUPER_16 unplaced-scaffold na na CAXOSJ010000016.1 <> na Primary Assembly 16772383 na SUPER_17 unplaced-scaffold na na CAXOSJ010000017.1 <> na Primary Assembly 15401236 na SUPER_18 unplaced-scaffold na na CAXOSJ010000018.1 <> na Primary Assembly 14648592 na SUPER_19 unplaced-scaffold na na CAXOSJ010000019.1 <> na Primary Assembly 13447299 na SUPER_20 unplaced-scaffold na na CAXOSJ010000020.1 <> na Primary Assembly 12025715 na SUPER_21 unplaced-scaffold na na CAXOSJ010000021.1 <> na Primary Assembly 8684234 na SUPER_22 unplaced-scaffold na na CAXOSJ010000022.1 <> na Primary Assembly 8476472 na SUPER_23 unplaced-scaffold na na CAXOSJ010000023.1 <> na Primary Assembly 7674211 na SUPER_24 unplaced-scaffold na na CAXOSJ010000024.1 <> na Primary Assembly 7671085 na SUPER_25 unplaced-scaffold na na CAXOSJ010000025.1 <> na Primary Assembly 7281541 na SUPER_26 unplaced-scaffold na na CAXOSJ010000026.1 <> na Primary Assembly 7037032 na SUPER_27 unplaced-scaffold na na CAXOSJ010000027.1 <> na Primary Assembly 6044144 na HAP2_SCAFFOLD_27 unplaced-scaffold na na CAXOSJ010000028.1 <> na Primary Assembly 4640673 na HAP2_SCAFFOLD_28 unplaced-scaffold na na CAXOSJ010000029.1 <> na Primary Assembly 4610563 na SUPER_28 unplaced-scaffold na na CAXOSJ010000030.1 <> na Primary Assembly 3793801 na SUPER_29 unplaced-scaffold na na CAXOSJ010000031.1 <> na Primary Assembly 2795488 na HAP2_SCAFFOLD_32 unplaced-scaffold na na CAXOSJ010000032.1 <> na Primary Assembly 2278017 na SUPER_30 unplaced-scaffold na na CAXOSJ010000033.1 <> na Primary Assembly 2065106 na SUPER_31 unplaced-scaffold na na CAXOSJ010000034.1 <> na Primary Assembly 1928347 na HAP2_SCAFFOLD_36 unplaced-scaffold na na CAXOSJ010000035.1 <> na Primary Assembly 1667590 na SUPER_32 unplaced-scaffold na na CAXOSJ010000036.1 <> na Primary Assembly 1201554 na HAP2_SCAFFOLD_39 unplaced-scaffold na na CAXOSJ010000037.1 <> na Primary Assembly 1083802 na HAP2_SCAFFOLD_41 unplaced-scaffold na na CAXOSJ010000038.1 <> na Primary Assembly 999000 na HAP2_SCAFFOLD_42 unplaced-scaffold na na CAXOSJ010000039.1 <> na Primary Assembly 981778 na HAP2_SCAFFOLD_43 unplaced-scaffold na na CAXOSJ010000040.1 <> na Primary Assembly 953283 na HAP2_SCAFFOLD_44 unplaced-scaffold na na CAXOSJ010000041.1 <> na Primary Assembly 949000 na HAP2_SCAFFOLD_45 unplaced-scaffold na na CAXOSJ010000042.1 <> na Primary Assembly 935452 na HAP2_SCAFFOLD_46 unplaced-scaffold na na CAXOSJ010000043.1 <> na Primary Assembly 913855 na HAP2_SCAFFOLD_47 unplaced-scaffold na na CAXOSJ010000044.1 <> na Primary Assembly 887053 na HAP2_SCAFFOLD_48 unplaced-scaffold na na CAXOSJ010000045.1 <> na Primary Assembly 875804 na HAP2_SCAFFOLD_49 unplaced-scaffold na na CAXOSJ010000046.1 <> na Primary Assembly 861000 na HAP2_SCAFFOLD_50 unplaced-scaffold na na CAXOSJ010000047.1 <> na Primary Assembly 859668 na HAP2_SCAFFOLD_51 unplaced-scaffold na na CAXOSJ010000048.1 <> na Primary Assembly 853000 na HAP2_SCAFFOLD_52 unplaced-scaffold na na CAXOSJ010000049.1 <> na Primary Assembly 841232 na HAP2_SCAFFOLD_53 unplaced-scaffold na na CAXOSJ010000050.1 <> na Primary Assembly 821965 na HAP2_SCAFFOLD_54 unplaced-scaffold na na CAXOSJ010000051.1 <> na Primary Assembly 820777 na HAP2_SCAFFOLD_55 unplaced-scaffold na na CAXOSJ010000052.1 <> na Primary Assembly 798936 na HAP2_SCAFFOLD_56 unplaced-scaffold na na CAXOSJ010000053.1 <> na Primary Assembly 798196 na SUPER_33 unplaced-scaffold na na CAXOSJ010000054.1 <> na Primary Assembly 786619 na HAP2_SCAFFOLD_60 unplaced-scaffold na na CAXOSJ010000055.1 <> na Primary Assembly 717000 na HAP2_SCAFFOLD_62 unplaced-scaffold na na CAXOSJ010000056.1 <> na Primary Assembly 676822 na HAP2_SCAFFOLD_63 unplaced-scaffold na na CAXOSJ010000057.1 <> na Primary Assembly 671081 na HAP2_SCAFFOLD_64 unplaced-scaffold na na CAXOSJ010000058.1 <> na Primary Assembly 666818 na HAP2_SCAFFOLD_65 unplaced-scaffold na na CAXOSJ010000059.1 <> na Primary Assembly 662099 na HAP2_SCAFFOLD_66 unplaced-scaffold na na CAXOSJ010000060.1 <> na Primary Assembly 660969 na SUPER_34 unplaced-scaffold na na CAXOSJ010000061.1 <> na Primary Assembly 608515 na HAP2_SCAFFOLD_68 unplaced-scaffold na na CAXOSJ010000062.1 <> na Primary Assembly 607316 na SUPER_35 unplaced-scaffold na na CAXOSJ010000063.1 <> na Primary Assembly 541273 na HAP2_SCAFFOLD_71 unplaced-scaffold na na CAXOSJ010000064.1 <> na Primary Assembly 518000 na HAP2_SCAFFOLD_72 unplaced-scaffold na na CAXOSJ010000065.1 <> na Primary Assembly 513734 na HAP2_SCAFFOLD_73 unplaced-scaffold na na CAXOSJ010000066.1 <> na Primary Assembly 511117 na HAP2_SCAFFOLD_75 unplaced-scaffold na na CAXOSJ010000067.1 <> na Primary Assembly 503629 na HAP2_SCAFFOLD_76 unplaced-scaffold na na CAXOSJ010000068.1 <> na Primary Assembly 498896 na SUPER_36 unplaced-scaffold na na CAXOSJ010000069.1 <> na Primary Assembly 498091 na HAP2_SCAFFOLD_77 unplaced-scaffold na na CAXOSJ010000070.1 <> na Primary Assembly 488000 na HAP2_SCAFFOLD_78 unplaced-scaffold na na CAXOSJ010000071.1 <> na Primary Assembly 467643 na HAP2_SCAFFOLD_79 unplaced-scaffold na na CAXOSJ010000072.1 <> na Primary Assembly 463763 na HAP2_SCAFFOLD_80 unplaced-scaffold na na CAXOSJ010000073.1 <> na Primary Assembly 454006 na HAP2_SCAFFOLD_81 unplaced-scaffold na na CAXOSJ010000074.1 <> na Primary Assembly 453791 na HAP2_SCAFFOLD_83 unplaced-scaffold na na CAXOSJ010000075.1 <> na Primary Assembly 449410 na HAP2_SCAFFOLD_84 unplaced-scaffold na na CAXOSJ010000076.1 <> na Primary Assembly 445000 na HAP2_SCAFFOLD_85 unplaced-scaffold na na CAXOSJ010000077.1 <> na Primary Assembly 436492 na HAP2_SCAFFOLD_86 unplaced-scaffold na na CAXOSJ010000078.1 <> na Primary Assembly 434000 na HAP2_SCAFFOLD_87 unplaced-scaffold na na CAXOSJ010000079.1 <> na Primary Assembly 416537 na HAP2_SCAFFOLD_89 unplaced-scaffold na na CAXOSJ010000080.1 <> na Primary Assembly 395040 na SUPER_37 unplaced-scaffold na na CAXOSJ010000081.1 <> na Primary Assembly 388928 na HAP2_SCAFFOLD_92 unplaced-scaffold na na CAXOSJ010000082.1 <> na Primary Assembly 357000 na HAP2_SCAFFOLD_93 unplaced-scaffold na na CAXOSJ010000083.1 <> na Primary Assembly 355000 na HAP2_SCAFFOLD_94 unplaced-scaffold na na CAXOSJ010000084.1 <> na Primary Assembly 328750 na SUPER_38 unplaced-scaffold na na CAXOSJ010000085.1 <> na Primary Assembly 321324 na HAP2_SCAFFOLD_96 unplaced-scaffold na na CAXOSJ010000086.1 <> na Primary Assembly 315560 na HAP2_SCAFFOLD_97 unplaced-scaffold na na CAXOSJ010000087.1 <> na Primary Assembly 305462 na HAP2_SCAFFOLD_100 unplaced-scaffold na na CAXOSJ010000088.1 <> na Primary Assembly 253000 na HAP2_SCAFFOLD_101 unplaced-scaffold na na CAXOSJ010000089.1 <> na Primary Assembly 246522 na HAP2_SCAFFOLD_102 unplaced-scaffold na na CAXOSJ010000090.1 <> na Primary Assembly 243160 na HAP2_SCAFFOLD_103 unplaced-scaffold na na CAXOSJ010000091.1 <> na Primary Assembly 235294 na HAP2_SCAFFOLD_104 unplaced-scaffold na na CAXOSJ010000092.1 <> na Primary Assembly 228702 na HAP2_SCAFFOLD_106 unplaced-scaffold na na CAXOSJ010000093.1 <> na Primary Assembly 222847 na HAP2_SCAFFOLD_107 unplaced-scaffold na na CAXOSJ010000094.1 <> na Primary Assembly 215225 na HAP2_SCAFFOLD_110 unplaced-scaffold na na CAXOSJ010000095.1 <> na Primary Assembly 204404 na HAP2_SCAFFOLD_111 unplaced-scaffold na na CAXOSJ010000096.1 <> na Primary Assembly 198978 na HAP2_SCAFFOLD_112 unplaced-scaffold na na CAXOSJ010000097.1 <> na Primary Assembly 193343 na HAP2_SCAFFOLD_114 unplaced-scaffold na na CAXOSJ010000098.1 <> na Primary Assembly 180000 na HAP2_SCAFFOLD_116 unplaced-scaffold na na CAXOSJ010000099.1 <> na Primary Assembly 177000 na HAP2_SCAFFOLD_117 unplaced-scaffold na na CAXOSJ010000100.1 <> na Primary Assembly 171000 na HAP2_SCAFFOLD_118 unplaced-scaffold na na 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