# Assembly name: mMusMuc1.1 # Organism name: Mus musculus (house mouse) # Taxid: 10090 # BioSample: SAMEA112251260 # BioProject: PRJEB60144 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2023-04-08 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CASGGP01 # Assembly method: various # Genome coverage: 34x # Sequencing technology: PacBio,OmniC # GenBank assembly accession: GCA_949316315.1 # Linked assembly: GCA_949316305.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_949316314.1 Primary Assembly ## GCA_949316316.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OX439014.1 <> na Primary Assembly 200127270 na SUPER_2 assembled-molecule 2 Chromosome OX439015.1 <> na Primary Assembly 184589612 na SUPER_3 assembled-molecule 3 Chromosome OX439017.1 <> na Primary Assembly 166580477 na SUPER_4 assembled-molecule 4 Chromosome OX439018.1 <> na Primary Assembly 165824877 na SUPER_5 assembled-molecule 5 Chromosome OX439019.1 <> na Primary Assembly 151737448 na SUPER_6 assembled-molecule 6 Chromosome OX439020.1 <> na Primary Assembly 151648869 na SUPER_7 assembled-molecule 7 Chromosome OX439021.1 <> na Primary Assembly 146218837 na SUPER_8 assembled-molecule 8 Chromosome OX439023.1 <> na Primary Assembly 129827242 na SUPER_9 assembled-molecule 9 Chromosome OX439025.1 <> na Primary Assembly 129049939 na SUPER_10 assembled-molecule 10 Chromosome OX439022.1 <> na Primary Assembly 132150484 na SUPER_11 assembled-molecule 11 Chromosome OX439024.1 <> na Primary Assembly 129618581 na SUPER_12 assembled-molecule 12 Chromosome OX439027.1 <> na Primary Assembly 119923733 na SUPER_13 assembled-molecule 13 Chromosome OX439026.1 <> na Primary Assembly 126876455 na SUPER_14 assembled-molecule 14 Chromosome OX439028.1 <> na Primary Assembly 119895560 na SUPER_15 assembled-molecule 15 Chromosome OX439029.1 <> na Primary Assembly 101857362 na SUPER_16 assembled-molecule 16 Chromosome OX439031.1 <> na Primary Assembly 96079412 na SUPER_17 assembled-molecule 17 Chromosome OX439030.1 <> na Primary Assembly 97324981 na SUPER_18 assembled-molecule 18 Chromosome OX439032.1 <> na Primary Assembly 89877872 na SUPER_19 assembled-molecule 19 Chromosome OX439033.1 <> na Primary Assembly 59470459 na SUPER_X assembled-molecule X Chromosome OX439016.1 <> na Primary Assembly 168231539 na SUPER_5_unloc_1 unlocalized-scaffold 5 Chromosome CASGGP010000001.1 <> na Primary Assembly 630658 na SUPER_17_unloc_2 unlocalized-scaffold 17 Chromosome CASGGP010000002.1 <> na Primary Assembly 167326 na SUPER_17_unloc_1 unlocalized-scaffold 17 Chromosome CASGGP010000003.1 <> na Primary Assembly 528489 na scaffold_21 unplaced-scaffold na na CASGGP010000004.1 <> na Primary Assembly 7262651 na scaffold_23 unplaced-scaffold na na CASGGP010000005.1 <> na Primary Assembly 5256000 na scaffold_24 unplaced-scaffold na na CASGGP010000006.1 <> na Primary Assembly 4453000 na scaffold_25 unplaced-scaffold na na CASGGP010000007.1 <> na Primary Assembly 3633418 na scaffold_26 unplaced-scaffold na na CASGGP010000008.1 <> na Primary Assembly 3622283 na scaffold_27 unplaced-scaffold na na CASGGP010000009.1 <> na Primary Assembly 3196000 na scaffold_28 unplaced-scaffold na na CASGGP010000010.1 <> na Primary Assembly 3144000 na scaffold_29 unplaced-scaffold na na CASGGP010000011.1 <> na Primary Assembly 2860181 na scaffold_30 unplaced-scaffold na na CASGGP010000012.1 <> na Primary Assembly 2824340 na scaffold_31 unplaced-scaffold na na CASGGP010000013.1 <> na Primary Assembly 2639000 na scaffold_32 unplaced-scaffold na na CASGGP010000014.1 <> na Primary Assembly 2621000 na scaffold_33 unplaced-scaffold na na CASGGP010000015.1 <> na Primary Assembly 2524979 na scaffold_34 unplaced-scaffold na na CASGGP010000016.1 <> na Primary Assembly 2280000 na scaffold_35 unplaced-scaffold na na CASGGP010000017.1 <> na Primary Assembly 2168064 na scaffold_36 unplaced-scaffold na na CASGGP010000018.1 <> na Primary Assembly 2055230 na scaffold_37 unplaced-scaffold na na CASGGP010000019.1 <> na Primary Assembly 2041000 na scaffold_38 unplaced-scaffold na na CASGGP010000020.1 <> na Primary Assembly 2005393 na scaffold_39 unplaced-scaffold na na CASGGP010000021.1 <> na Primary Assembly 1914599 na scaffold_40 unplaced-scaffold na na CASGGP010000022.1 <> na Primary Assembly 1876046 na scaffold_41 unplaced-scaffold na na CASGGP010000023.1 <> na Primary Assembly 1854217 na scaffold_42 unplaced-scaffold na na CASGGP010000024.1 <> na Primary Assembly 1723000 na scaffold_43 unplaced-scaffold na na CASGGP010000025.1 <> na Primary Assembly 1611000 na scaffold_44 unplaced-scaffold na na CASGGP010000026.1 <> na Primary Assembly 1498000 na scaffold_45 unplaced-scaffold na na CASGGP010000027.1 <> na Primary Assembly 1382196 na scaffold_46 unplaced-scaffold na na CASGGP010000028.1 <> na Primary Assembly 1362000 na scaffold_47 unplaced-scaffold na na CASGGP010000029.1 <> na Primary Assembly 1198000 na scaffold_48 unplaced-scaffold na na CASGGP010000030.1 <> na Primary Assembly 1155000 na scaffold_49 unplaced-scaffold na na CASGGP010000031.1 <> na Primary Assembly 1084000 na scaffold_50 unplaced-scaffold na na CASGGP010000032.1 <> na Primary Assembly 1058000 na scaffold_51 unplaced-scaffold na na CASGGP010000033.1 <> na Primary Assembly 1048000 na scaffold_52 unplaced-scaffold na na CASGGP010000034.1 <> na Primary Assembly 994833 na scaffold_53 unplaced-scaffold na na CASGGP010000035.1 <> na Primary Assembly 983000 na scaffold_54 unplaced-scaffold na na CASGGP010000036.1 <> na Primary Assembly 966000 na scaffold_55 unplaced-scaffold na na CASGGP010000037.1 <> na Primary Assembly 956000 na scaffold_56 unplaced-scaffold na na CASGGP010000038.1 <> na Primary Assembly 955847 na scaffold_57 unplaced-scaffold na na CASGGP010000039.1 <> na Primary Assembly 847749 na scaffold_58 unplaced-scaffold na na CASGGP010000040.1 <> na Primary Assembly 781000 na scaffold_59 unplaced-scaffold na na CASGGP010000041.1 <> na Primary Assembly 637000 na scaffold_60 unplaced-scaffold na na CASGGP010000042.1 <> na Primary Assembly 634626 na scaffold_62 unplaced-scaffold na na CASGGP010000043.1 <> na Primary Assembly 626000 na scaffold_63 unplaced-scaffold na na CASGGP010000044.1 <> na Primary Assembly 620000 na scaffold_64 unplaced-scaffold na na CASGGP010000045.1 <> na Primary Assembly 609000 na scaffold_65 unplaced-scaffold na na CASGGP010000046.1 <> na Primary Assembly 607000 na scaffold_66 unplaced-scaffold na na CASGGP010000047.1 <> na Primary Assembly 572000 na scaffold_67 unplaced-scaffold na na CASGGP010000048.1 <> na Primary Assembly 559000 na scaffold_68 unplaced-scaffold na na CASGGP010000049.1 <> na Primary Assembly 540000 na scaffold_70 unplaced-scaffold na na CASGGP010000050.1 <> na Primary Assembly 527000 na scaffold_71 unplaced-scaffold na na CASGGP010000051.1 <> na Primary Assembly 519000 na scaffold_72 unplaced-scaffold na na CASGGP010000052.1 <> na Primary Assembly 495000 na scaffold_73 unplaced-scaffold na na CASGGP010000053.1 <> na Primary Assembly 485552 na scaffold_74 unplaced-scaffold na na CASGGP010000054.1 <> na Primary Assembly 481000 na scaffold_75 unplaced-scaffold na na CASGGP010000055.1 <> na Primary Assembly 457000 na scaffold_76 unplaced-scaffold na na CASGGP010000056.1 <> na Primary Assembly 419419 na scaffold_77 unplaced-scaffold na na CASGGP010000057.1 <> na Primary Assembly 391000 na scaffold_78 unplaced-scaffold na na CASGGP010000058.1 <> na Primary Assembly 387000 na scaffold_79 unplaced-scaffold na na CASGGP010000059.1 <> na Primary Assembly 362000 na scaffold_80 unplaced-scaffold na na CASGGP010000060.1 <> na Primary Assembly 355000 na scaffold_81 unplaced-scaffold na na CASGGP010000061.1 <> na Primary Assembly 354000 na scaffold_82 unplaced-scaffold na na CASGGP010000062.1 <> na Primary Assembly 353618 na scaffold_83 unplaced-scaffold na na CASGGP010000063.1 <> na Primary Assembly 336000 na scaffold_84 unplaced-scaffold na na CASGGP010000064.1 <> na Primary Assembly 326000 na scaffold_85 unplaced-scaffold na na CASGGP010000065.1 <> na Primary Assembly 322000 na scaffold_86 unplaced-scaffold na na CASGGP010000066.1 <> na Primary Assembly 310000 na scaffold_87 unplaced-scaffold na na CASGGP010000067.1 <> na Primary Assembly 308000 na scaffold_88 unplaced-scaffold na na CASGGP010000068.1 <> na Primary Assembly 306000 na scaffold_89 unplaced-scaffold na na CASGGP010000069.1 <> na Primary Assembly 283000 na scaffold_91 unplaced-scaffold na na CASGGP010000070.1 <> na Primary Assembly 275000 na scaffold_92 unplaced-scaffold na na CASGGP010000071.1 <> na Primary Assembly 274556 na scaffold_93 unplaced-scaffold na na CASGGP010000072.1 <> na Primary Assembly 274000 na scaffold_94 unplaced-scaffold na na CASGGP010000073.1 <> na Primary Assembly 270000 na scaffold_95 unplaced-scaffold na na CASGGP010000074.1 <> na Primary Assembly 253082 na scaffold_96 unplaced-scaffold na na CASGGP010000075.1 <> na Primary Assembly 251000 na scaffold_97 unplaced-scaffold na na CASGGP010000076.1 <> na Primary Assembly 249000 na scaffold_98 unplaced-scaffold na na CASGGP010000077.1 <> na Primary Assembly 227000 na scaffold_99 unplaced-scaffold na na CASGGP010000078.1 <> na Primary Assembly 222000 na scaffold_100 unplaced-scaffold na na CASGGP010000079.1 <> na Primary Assembly 219000 na scaffold_101 unplaced-scaffold na na CASGGP010000080.1 <> na Primary Assembly 217000 na scaffold_102 unplaced-scaffold na na CASGGP010000081.1 <> na Primary Assembly 217000 na scaffold_103 unplaced-scaffold na na CASGGP010000082.1 <> na Primary Assembly 213000 na scaffold_104 unplaced-scaffold na na CASGGP010000083.1 <> na Primary Assembly 208000 na scaffold_106 unplaced-scaffold na na CASGGP010000084.1 <> na Primary Assembly 195000 na scaffold_107 unplaced-scaffold na na CASGGP010000085.1 <> na Primary Assembly 193000 na scaffold_108 unplaced-scaffold na na CASGGP010000086.1 <> na Primary Assembly 185000 na scaffold_109 unplaced-scaffold na na CASGGP010000087.1 <> na Primary Assembly 179000 na scaffold_110 unplaced-scaffold na na CASGGP010000088.1 <> na Primary Assembly 169000 na scaffold_113 unplaced-scaffold na na CASGGP010000089.1 <> na Primary Assembly 161000 na scaffold_114 unplaced-scaffold na na CASGGP010000090.1 <> na Primary Assembly 160000 na scaffold_115 unplaced-scaffold na na CASGGP010000091.1 <> na Primary Assembly 153000 na scaffold_116 unplaced-scaffold na na CASGGP010000092.1 <> na Primary Assembly 145000 na scaffold_117 unplaced-scaffold na na CASGGP010000093.1 <> na Primary Assembly 141779 na scaffold_118 unplaced-scaffold na na CASGGP010000094.1 <> na Primary Assembly 140000 na scaffold_119 unplaced-scaffold na na CASGGP010000095.1 <> na Primary Assembly 139000 na scaffold_120 unplaced-scaffold na na CASGGP010000096.1 <> na Primary Assembly 137000 na scaffold_121 unplaced-scaffold na na CASGGP010000097.1 <> na Primary Assembly 136000 na scaffold_122 unplaced-scaffold na na CASGGP010000098.1 <> na Primary Assembly 135000 na scaffold_123 unplaced-scaffold na na CASGGP010000099.1 <> na Primary Assembly 133000 na scaffold_124 unplaced-scaffold na na CASGGP010000100.1 <> na Primary Assembly 129000 na scaffold_125 unplaced-scaffold na na CASGGP010000101.1 <> na Primary Assembly 126000 na scaffold_126 unplaced-scaffold na na CASGGP010000102.1 <> na Primary Assembly 123000 na scaffold_127 unplaced-scaffold na na CASGGP010000103.1 <> na Primary Assembly 122000 na scaffold_128 unplaced-scaffold na na CASGGP010000104.1 <> na Primary Assembly 117000 na scaffold_129 unplaced-scaffold na na CASGGP010000105.1 <> na Primary Assembly 113000 na scaffold_130 unplaced-scaffold na na CASGGP010000106.1 <> na Primary Assembly 112000 na scaffold_131 unplaced-scaffold na na CASGGP010000107.1 <> na Primary Assembly 107592 na scaffold_132 unplaced-scaffold na na CASGGP010000108.1 <> na Primary Assembly 100000 na scaffold_134 unplaced-scaffold na na CASGGP010000109.1 <> na Primary Assembly 98000 na scaffold_135 unplaced-scaffold na na CASGGP010000110.1 <> na Primary Assembly 96545 na scaffold_136 unplaced-scaffold na na CASGGP010000111.1 <> na Primary Assembly 96000 na scaffold_137 unplaced-scaffold na na CASGGP010000112.1 <> na Primary Assembly 89020 na scaffold_138 unplaced-scaffold na na CASGGP010000113.1 <> na Primary Assembly 88955 na scaffold_139 unplaced-scaffold na na CASGGP010000114.1 <> na Primary Assembly 87970 na scaffold_140 unplaced-scaffold na na CASGGP010000115.1 <> na Primary Assembly 87000 na scaffold_141 unplaced-scaffold na na CASGGP010000116.1 <> na Primary Assembly 86000 na scaffold_142 unplaced-scaffold na na CASGGP010000117.1 <> na Primary Assembly 86000 na scaffold_143 unplaced-scaffold na na CASGGP010000118.1 <> na Primary Assembly 85496 na scaffold_144 unplaced-scaffold na na CASGGP010000119.1 <> na Primary Assembly 85000 na scaffold_145 unplaced-scaffold na na CASGGP010000120.1 <> na Primary Assembly 79000 na scaffold_146 unplaced-scaffold na na CASGGP010000121.1 <> na Primary Assembly 76000 na scaffold_147 unplaced-scaffold na na CASGGP010000122.1 <> na Primary Assembly 75230 na scaffold_148 unplaced-scaffold na na CASGGP010000123.1 <> na Primary Assembly 75000 na scaffold_149 unplaced-scaffold na na CASGGP010000124.1 <> na Primary Assembly 72647 na scaffold_150 unplaced-scaffold na na CASGGP010000125.1 <> na Primary Assembly 72000 na scaffold_152 unplaced-scaffold na na CASGGP010000126.1 <> na Primary Assembly 71000 na scaffold_153 unplaced-scaffold na na CASGGP010000127.1 <> na Primary Assembly 66000 na scaffold_154 unplaced-scaffold na na CASGGP010000128.1 <> na Primary Assembly 64000 na scaffold_155 unplaced-scaffold na na CASGGP010000129.1 <> na Primary Assembly 61512 na scaffold_157 unplaced-scaffold na na CASGGP010000130.1 <> na Primary Assembly 59166 na scaffold_158 unplaced-scaffold na na CASGGP010000131.1 <> na Primary Assembly 58000 na scaffold_160 unplaced-scaffold na na CASGGP010000132.1 <> na Primary Assembly 54000 na scaffold_161 unplaced-scaffold na na CASGGP010000133.1 <> na Primary Assembly 53000 na scaffold_163 unplaced-scaffold na na CASGGP010000134.1 <> na Primary Assembly 52000 na scaffold_165 unplaced-scaffold na na CASGGP010000135.1 <> na Primary Assembly 47000 na scaffold_166 unplaced-scaffold na na CASGGP010000136.1 <> na Primary Assembly 46798 na scaffold_168 unplaced-scaffold na na CASGGP010000137.1 <> na Primary Assembly 39023 na scaffold_171 unplaced-scaffold na na CASGGP010000138.1 <> na Primary Assembly 35225 na scaffold_173 unplaced-scaffold na na CASGGP010000139.1 <> na Primary Assembly 28883 na scaffold_178 unplaced-scaffold na na CASGGP010000140.1 <> na Primary Assembly 19000 na scaffold_186 unplaced-scaffold na na CASGGP010000141.1 <> na Primary Assembly 7482 na scaffold_151 unplaced-scaffold na na CASGGP010000142.1 <> na Primary Assembly 72000 na scaffold_156 unplaced-scaffold na na CASGGP010000143.1 <> na Primary Assembly 60000 na scaffold_159 unplaced-scaffold na na CASGGP010000144.1 <> na Primary Assembly 57000 na scaffold_162 unplaced-scaffold na na CASGGP010000145.1 <> na Primary Assembly 53000 na scaffold_164 unplaced-scaffold na na CASGGP010000146.1 <> na Primary Assembly 52000 na scaffold_167 unplaced-scaffold na na CASGGP010000147.1 <> na Primary Assembly 41000 na scaffold_169 unplaced-scaffold na na CASGGP010000148.1 <> na Primary Assembly 38000 na scaffold_170 unplaced-scaffold na na CASGGP010000149.1 <> na Primary Assembly 35551 na scaffold_172 unplaced-scaffold na na CASGGP010000150.1 <> na Primary Assembly 31953 na scaffold_174 unplaced-scaffold na na CASGGP010000151.1 <> na Primary Assembly 25000 na scaffold_175 unplaced-scaffold na na CASGGP010000152.1 <> na Primary Assembly 25000 na scaffold_176 unplaced-scaffold na na CASGGP010000153.1 <> na Primary Assembly 22121 na scaffold_180 unplaced-scaffold na na CASGGP010000154.1 <> na Primary Assembly 16127 na scaffold_181 unplaced-scaffold na na CASGGP010000155.1 <> na Primary Assembly 15000 na scaffold_183 unplaced-scaffold na na CASGGP010000156.1 <> na Primary Assembly 12000 na scaffold_184 unplaced-scaffold na na CASGGP010000157.1 <> na Primary Assembly 12000 na scaffold_185 unplaced-scaffold na na CASGGP010000158.1 <> na Primary Assembly 11000 na scaffold_MT_1 assembled-molecule MT Mitochondrion OX439034.1 <> na non-nuclear 16299 na