# Assembly name: CAST_EiJ_v3 # Organism name: Mus musculus castaneus (southeastern Asian house mouse) # Taxid: 10091 # BioSample: SAMEA9544174 # BioProject: PRJEB47108 # Submitter: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE # Date: 2022-07-01 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAKLHS02 # Genome coverage: 40x # Excluded from RefSeq: genome length too small # GenBank assembly accession: GCA_921999005.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_921999004.2 Primary Assembly ## GCA_921999006.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name CAST_EiJ#1#chr1 assembled-molecule 1 Chromosome OW971825.1 <> na Primary Assembly 190456602 na CAST_EiJ#1#chr2 assembled-molecule 2 Chromosome OW971836.1 <> na Primary Assembly 175169515 na CAST_EiJ#1#chr3 assembled-molecule 3 Chromosome OW971837.1 <> na Primary Assembly 157225990 na CAST_EiJ#1#chr4 assembled-molecule 4 Chromosome OW971838.1 <> na Primary Assembly 153013545 na CAST_EiJ#1#chr5 assembled-molecule 5 Chromosome OW971839.1 <> na Primary Assembly 144633503 na CAST_EiJ#1#chr6 assembled-molecule 6 Chromosome OW971840.1 <> na Primary Assembly 146797481 na CAST_EiJ#1#chr7 assembled-molecule 7 Chromosome OW971841.1 <> na Primary Assembly 135973747 na CAST_EiJ#1#chr8 assembled-molecule 8 Chromosome OW971842.1 <> na Primary Assembly 124024179 na CAST_EiJ#1#chr9 assembled-molecule 9 Chromosome OW971843.1 <> na Primary Assembly 121158022 na CAST_EiJ#1#chr10 assembled-molecule 10 Chromosome OW971826.1 <> na Primary Assembly 126140585 na CAST_EiJ#1#chr11 assembled-molecule 11 Chromosome OW971827.1 <> na Primary Assembly 118578498 na CAST_EiJ#1#chr12 assembled-molecule 12 Chromosome OW971828.1 <> na Primary Assembly 112862403 na CAST_EiJ#1#chr13 assembled-molecule 13 Chromosome OW971829.1 <> na Primary Assembly 114700433 na CAST_EiJ#1#chr14 assembled-molecule 14 Chromosome OW971830.1 <> na Primary Assembly 114677312 na CAST_EiJ#1#chr15 assembled-molecule 15 Chromosome OW971831.1 <> na Primary Assembly 100555336 na CAST_EiJ#1#chr16 assembled-molecule 16 Chromosome OW971832.1 <> na Primary Assembly 94414171 na CAST_EiJ#1#chr17 assembled-molecule 17 Chromosome OW971833.1 <> na Primary Assembly 91403118 na CAST_EiJ#1#chr18 assembled-molecule 18 Chromosome OW971834.1 <> na Primary Assembly 86858824 na CAST_EiJ#1#chr19 assembled-molecule 19 Chromosome OW971835.1 <> na Primary Assembly 57621848 na CAST_EiJ#1#chrX assembled-molecule X Chromosome OW971844.1 <> na Primary Assembly 148054535 na CAST_EiJ#1#chrX_unloc_1 unplaced-scaffold na na CAKLHS020000001.1 <> na Primary Assembly 445002 na CAST_EiJ#1#21 unplaced-scaffold na na CAKLHS020000002.1 <> na Primary Assembly 103138 na CAST_EiJ#1#22 unplaced-scaffold na na CAKLHS020000003.1 <> na Primary Assembly 56484 na CAST_EiJ#1#24 unplaced-scaffold na na CAKLHS020000004.1 <> na Primary Assembly 76463 na CAST_EiJ#1#25 unplaced-scaffold na na CAKLHS020000005.1 <> na Primary Assembly 12190 na CAST_EiJ#1#28 unplaced-scaffold na na CAKLHS020000006.1 <> na Primary Assembly 76463 na CAST_EiJ#1#30 unplaced-scaffold na na CAKLHS020000007.1 <> na Primary Assembly 58029 na CAST_EiJ#1#31 unplaced-scaffold na na CAKLHS020000008.1 <> na Primary Assembly 68100 na CAST_EiJ#1#36 unplaced-scaffold na na CAKLHS020000009.1 <> na Primary Assembly 22948 na CAST_EiJ#1#40 unplaced-scaffold na na CAKLHS020000010.1 <> na Primary Assembly 127094 na CAST_EiJ#1#42 unplaced-scaffold na na CAKLHS020000011.1 <> na Primary Assembly 44601 na CAST_EiJ#1#44 unplaced-scaffold na na CAKLHS020000012.1 <> na Primary Assembly 63087 na CAST_EiJ#1#46 unplaced-scaffold na na CAKLHS020000013.1 <> na Primary Assembly 28603 na CAST_EiJ#1#47 unplaced-scaffold na na CAKLHS020000014.1 <> na Primary Assembly 119659 na CAST_EiJ#1#48 unplaced-scaffold na na CAKLHS020000015.1 <> na Primary Assembly 105201 na CAST_EiJ#1#51 unplaced-scaffold na na CAKLHS020000016.1 <> na Primary Assembly 117067 na CAST_EiJ#1#52 unplaced-scaffold na na CAKLHS020000017.1 <> na Primary Assembly 20261 na CAST_EiJ#1#56 unplaced-scaffold na na CAKLHS020000018.1 <> na Primary Assembly 37141 na CAST_EiJ#1#59 unplaced-scaffold na na CAKLHS020000019.1 <> na Primary Assembly 60308 na CAST_EiJ#1#61 unplaced-scaffold na na CAKLHS020000020.1 <> na Primary Assembly 29266 na CAST_EiJ#1#62 unplaced-scaffold na na CAKLHS020000021.1 <> na Primary Assembly 63905 na CAST_EiJ#1#63 unplaced-scaffold na na CAKLHS020000022.1 <> na Primary Assembly 87739 na CAST_EiJ#1#64 unplaced-scaffold na na CAKLHS020000023.1 <> na Primary Assembly 55404 na CAST_EiJ#1#70 unplaced-scaffold na na CAKLHS020000024.1 <> na Primary Assembly 39246 na CAST_EiJ#1#71 unplaced-scaffold na na CAKLHS020000025.1 <> na Primary Assembly 63585 na CAST_EiJ#1#73 unplaced-scaffold na na CAKLHS020000026.1 <> na Primary Assembly 48215 na CAST_EiJ#1#74 unplaced-scaffold na na CAKLHS020000027.1 <> na Primary Assembly 85024 na CAST_EiJ#1#76 unplaced-scaffold na na CAKLHS020000028.1 <> na Primary Assembly 21773 na CAST_EiJ#1#79 unplaced-scaffold na na CAKLHS020000029.1 <> na Primary Assembly 230640 na CAST_EiJ#1#81 unplaced-scaffold na na CAKLHS020000030.1 <> na Primary Assembly 28885 na CAST_EiJ#1#83 unplaced-scaffold na na CAKLHS020000031.1 <> na Primary Assembly 27014 na CAST_EiJ#1#86 unplaced-scaffold na na CAKLHS020000032.1 <> na Primary Assembly 16823 na CAST_EiJ#1#88 unplaced-scaffold na na CAKLHS020000033.1 <> na Primary Assembly 27438 na CAST_EiJ#1#90 unplaced-scaffold na na CAKLHS020000034.1 <> na Primary Assembly 74941 na CAST_EiJ#1#92 unplaced-scaffold na na CAKLHS020000035.1 <> na Primary Assembly 15013 na CAST_EiJ#1#95 unplaced-scaffold na na CAKLHS020000036.1 <> na Primary Assembly 16356 na CAST_EiJ#1#98 unplaced-scaffold na na CAKLHS020000037.1 <> na Primary Assembly 61032 na CAST_EiJ#1#100 unplaced-scaffold na na CAKLHS020000038.1 <> na Primary Assembly 24064 na CAST_EiJ#1#101 unplaced-scaffold na na CAKLHS020000039.1 <> na Primary Assembly 64706 na CAST_EiJ#1#106 unplaced-scaffold na na CAKLHS020000040.1 <> na Primary Assembly 66670 na CAST_EiJ#1#108 unplaced-scaffold na na CAKLHS020000041.1 <> na Primary Assembly 168503 na CAST_EiJ#1#109 unplaced-scaffold na na CAKLHS020000042.1 <> na Primary Assembly 10871 na CAST_EiJ#1#113 unplaced-scaffold na na CAKLHS020000043.1 <> na Primary Assembly 19249 na CAST_EiJ#1#116 unplaced-scaffold na na CAKLHS020000044.1 <> na Primary Assembly 76986 na CAST_EiJ#1#117 unplaced-scaffold na na CAKLHS020000045.1 <> na Primary Assembly 26671 na CAST_EiJ#1#121 unplaced-scaffold na na CAKLHS020000046.1 <> na Primary Assembly 15554 na CAST_EiJ#1#123 unplaced-scaffold na na CAKLHS020000047.1 <> na Primary Assembly 23768 na CAST_EiJ#1#126 unplaced-scaffold na na CAKLHS020000048.1 <> na Primary Assembly 48929 na CAST_EiJ#1#129 unplaced-scaffold na na CAKLHS020000049.1 <> na Primary Assembly 75517 na CAST_EiJ#1#130 unplaced-scaffold na na CAKLHS020000050.1 <> na Primary Assembly 44823 na CAST_EiJ#1#134 unplaced-scaffold na na CAKLHS020000051.1 <> na Primary Assembly 16134 na CAST_EiJ#1#135 unplaced-scaffold na na CAKLHS020000052.1 <> na Primary Assembly 66156 na CAST_EiJ#1#137 unplaced-scaffold na na CAKLHS020000053.1 <> na Primary Assembly 39716 na CAST_EiJ#1#139 unplaced-scaffold na na CAKLHS020000054.1 <> na Primary Assembly 87268 na CAST_EiJ#1#141 unplaced-scaffold na na CAKLHS020000055.1 <> na Primary Assembly 32705 na CAST_EiJ#1#143 unplaced-scaffold na na CAKLHS020000056.1 <> na Primary Assembly 39894 na CAST_EiJ#1#147 unplaced-scaffold na na CAKLHS020000057.1 <> na Primary Assembly 184903 na CAST_EiJ#1#149 unplaced-scaffold na na CAKLHS020000058.1 <> na Primary Assembly 73588 na CAST_EiJ#1#150 unplaced-scaffold na na CAKLHS020000059.1 <> na Primary Assembly 32906 na CAST_EiJ#1#23 unplaced-scaffold na na CAKLHS020000060.1 <> na Primary Assembly 47768 na CAST_EiJ#1#26 unplaced-scaffold na na CAKLHS020000061.1 <> na Primary Assembly 17427 na CAST_EiJ#1#27 unplaced-scaffold na na CAKLHS020000062.1 <> na Primary Assembly 24015 na CAST_EiJ#1#29 unplaced-scaffold na na CAKLHS020000063.1 <> na Primary Assembly 16124 na CAST_EiJ#1#32 unplaced-scaffold na na CAKLHS020000064.1 <> na Primary Assembly 27966 na CAST_EiJ#1#34 unplaced-scaffold na na CAKLHS020000065.1 <> na Primary Assembly 21687 na CAST_EiJ#1#35 unplaced-scaffold na na CAKLHS020000066.1 <> na Primary Assembly 31618 na CAST_EiJ#1#37 unplaced-scaffold na na CAKLHS020000067.1 <> na Primary Assembly 19685 na CAST_EiJ#1#38 unplaced-scaffold na na CAKLHS020000068.1 <> na Primary Assembly 21059 na CAST_EiJ#1#39 unplaced-scaffold na na CAKLHS020000069.1 <> na Primary Assembly 19742 na CAST_EiJ#1#43 unplaced-scaffold na na CAKLHS020000070.1 <> na Primary Assembly 38008 na CAST_EiJ#1#45 unplaced-scaffold na na CAKLHS020000071.1 <> na Primary Assembly 16205 na CAST_EiJ#1#49 unplaced-scaffold na na CAKLHS020000072.1 <> na Primary Assembly 18561 na CAST_EiJ#1#50 unplaced-scaffold na na CAKLHS020000073.1 <> na Primary Assembly 10751 na CAST_EiJ#1#53 unplaced-scaffold na na CAKLHS020000074.1 <> na Primary Assembly 27730 na CAST_EiJ#1#54 unplaced-scaffold na na CAKLHS020000075.1 <> na Primary Assembly 10758 na CAST_EiJ#1#55 unplaced-scaffold na na CAKLHS020000076.1 <> na Primary Assembly 20427 na CAST_EiJ#1#57 unplaced-scaffold na na CAKLHS020000077.1 <> na Primary Assembly 32719 na CAST_EiJ#1#58 unplaced-scaffold na na CAKLHS020000078.1 <> na Primary Assembly 10977 na CAST_EiJ#1#60 unplaced-scaffold na na CAKLHS020000079.1 <> na Primary Assembly 16104 na CAST_EiJ#1#65 unplaced-scaffold na na CAKLHS020000080.1 <> na Primary Assembly 26366 na CAST_EiJ#1#66 unplaced-scaffold na na CAKLHS020000081.1 <> na Primary Assembly 11663 na CAST_EiJ#1#68 unplaced-scaffold na na CAKLHS020000082.1 <> na Primary Assembly 13090 na CAST_EiJ#1#69 unplaced-scaffold na na CAKLHS020000083.1 <> na Primary Assembly 21058 na CAST_EiJ#1#72 unplaced-scaffold na na CAKLHS020000084.1 <> na Primary Assembly 42553 na CAST_EiJ#1#75 unplaced-scaffold na na CAKLHS020000085.1 <> na Primary Assembly 40426 na CAST_EiJ#1#77 unplaced-scaffold na na CAKLHS020000086.1 <> na Primary Assembly 20947 na CAST_EiJ#1#78 unplaced-scaffold na na CAKLHS020000087.1 <> na Primary Assembly 16426 na CAST_EiJ#1#80 unplaced-scaffold na na CAKLHS020000088.1 <> na Primary Assembly 15671 na CAST_EiJ#1#82 unplaced-scaffold na na CAKLHS020000089.1 <> na Primary Assembly 38662 na CAST_EiJ#1#84 unplaced-scaffold na na CAKLHS020000090.1 <> na Primary Assembly 44064 na CAST_EiJ#1#85 unplaced-scaffold na na CAKLHS020000091.1 <> na Primary Assembly 26484 na CAST_EiJ#1#87 unplaced-scaffold na na CAKLHS020000092.1 <> na Primary Assembly 38827 na CAST_EiJ#1#89 unplaced-scaffold na na CAKLHS020000093.1 <> na Primary Assembly 32844 na CAST_EiJ#1#91 unplaced-scaffold na na CAKLHS020000094.1 <> na Primary Assembly 31121 na CAST_EiJ#1#93 unplaced-scaffold na na CAKLHS020000095.1 <> na Primary Assembly 49927 na CAST_EiJ#1#94 unplaced-scaffold na na CAKLHS020000096.1 <> na Primary Assembly 12148 na CAST_EiJ#1#96 unplaced-scaffold na na CAKLHS020000097.1 <> na Primary Assembly 19838 na CAST_EiJ#1#97 unplaced-scaffold na na CAKLHS020000098.1 <> na Primary Assembly 47599 na CAST_EiJ#1#99 unplaced-scaffold na na CAKLHS020000099.1 <> na Primary Assembly 11141 na CAST_EiJ#1#102 unplaced-scaffold na na CAKLHS020000100.1 <> na Primary Assembly 10155 na CAST_EiJ#1#103 unplaced-scaffold na na CAKLHS020000101.1 <> na Primary Assembly 10463 na CAST_EiJ#1#104 unplaced-scaffold na na CAKLHS020000102.1 <> na Primary Assembly 14085 na CAST_EiJ#1#105 unplaced-scaffold na na CAKLHS020000103.1 <> na Primary Assembly 10276 na CAST_EiJ#1#107 unplaced-scaffold na na CAKLHS020000104.1 <> na Primary Assembly 24074 na CAST_EiJ#1#110 unplaced-scaffold na na CAKLHS020000105.1 <> na Primary Assembly 17627 na CAST_EiJ#1#111 unplaced-scaffold na na CAKLHS020000106.1 <> na Primary Assembly 23864 na CAST_EiJ#1#112 unplaced-scaffold na na CAKLHS020000107.1 <> na Primary Assembly 16254 na CAST_EiJ#1#114 unplaced-scaffold na na CAKLHS020000108.1 <> na Primary Assembly 20784 na CAST_EiJ#1#115 unplaced-scaffold na na CAKLHS020000109.1 <> na Primary Assembly 26786 na CAST_EiJ#1#118 unplaced-scaffold na na CAKLHS020000110.1 <> na Primary Assembly 26268 na CAST_EiJ#1#120 unplaced-scaffold na na CAKLHS020000111.1 <> na Primary Assembly 37182 na CAST_EiJ#1#122 unplaced-scaffold na na CAKLHS020000112.1 <> na Primary Assembly 58607 na CAST_EiJ#1#124 unplaced-scaffold na na CAKLHS020000113.1 <> na Primary Assembly 36080 na CAST_EiJ#1#125 unplaced-scaffold na na CAKLHS020000114.1 <> na Primary Assembly 21704 na CAST_EiJ#1#127 unplaced-scaffold na na CAKLHS020000115.1 <> na Primary Assembly 16234 na CAST_EiJ#1#128 unplaced-scaffold na na CAKLHS020000116.1 <> na Primary Assembly 11825 na CAST_EiJ#1#132 unplaced-scaffold na na CAKLHS020000117.1 <> na Primary Assembly 41002 na CAST_EiJ#1#133 unplaced-scaffold na na CAKLHS020000118.1 <> na Primary Assembly 18995 na CAST_EiJ#1#136 unplaced-scaffold na na CAKLHS020000119.1 <> na Primary Assembly 43246 na CAST_EiJ#1#138 unplaced-scaffold na na CAKLHS020000120.1 <> na Primary Assembly 22032 na CAST_EiJ#1#140 unplaced-scaffold na na CAKLHS020000121.1 <> na Primary Assembly 13153 na CAST_EiJ#1#142 unplaced-scaffold na na CAKLHS020000122.1 <> na Primary Assembly 30132 na CAST_EiJ#1#144 unplaced-scaffold na na CAKLHS020000123.1 <> na Primary Assembly 17305 na CAST_EiJ#1#145 unplaced-scaffold na na CAKLHS020000124.1 <> na Primary Assembly 14904 na CAST_EiJ#1#146 unplaced-scaffold na na CAKLHS020000125.1 <> na Primary Assembly 31707 na CAST_EiJ#1#148 unplaced-scaffold na na CAKLHS020000126.1 <> na Primary Assembly 29169 na CAST_EiJ#1#MT assembled-molecule MIT Mitochondrion OW971845.1 <> na non-nuclear 16299 na