# Assembly name: 129S1_SvImJ_v3 # Organism name: Mus musculus (house mouse) # Taxid: 10090 # BioSample: SAMEA9544178 # BioProject: PRJEB47108 # Submitter: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE # Date: 2022-07-01 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAKLHM02 # Genome coverage: 40x # GenBank assembly accession: GCA_921998555.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_921998554.2 Primary Assembly ## GCA_921998556.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name 129S1_SvImJ#1#chr1 assembled-molecule 1 Chromosome OW971720.1 <> na Primary Assembly 192853653 na 129S1_SvImJ#1#chr2 assembled-molecule 2 Chromosome OW971721.1 <> na Primary Assembly 177680146 na 129S1_SvImJ#1#chr3 assembled-molecule 3 Chromosome OW971722.1 <> na Primary Assembly 156641776 na 129S1_SvImJ#1#chr4 assembled-molecule 4 Chromosome OW971723.1 <> na Primary Assembly 147405712 na 129S1_SvImJ#1#chr5 assembled-molecule 5 Chromosome OW971726.1 <> na Primary Assembly 145459508 na 129S1_SvImJ#1#chr6 assembled-molecule 6 Chromosome OW971724.1 <> na Primary Assembly 147010418 na 129S1_SvImJ#1#chr7 assembled-molecule 7 Chromosome OW971727.1 <> na Primary Assembly 131469533 na 129S1_SvImJ#1#chr8 assembled-molecule 8 Chromosome OW971729.1 <> na Primary Assembly 124315410 na 129S1_SvImJ#1#chr9 assembled-molecule 9 Chromosome OW971730.1 <> na Primary Assembly 121687198 na 129S1_SvImJ#1#chr10 assembled-molecule 10 Chromosome OW971728.1 <> na Primary Assembly 126792426 na 129S1_SvImJ#1#chr11 assembled-molecule 11 Chromosome OW971731.1 <> na Primary Assembly 119271148 na 129S1_SvImJ#1#chr12 assembled-molecule 12 Chromosome OW971734.1 <> na Primary Assembly 112370561 na 129S1_SvImJ#1#chr13 assembled-molecule 13 Chromosome OW971732.1 <> na Primary Assembly 114519524 na 129S1_SvImJ#1#chr14 assembled-molecule 14 Chromosome OW971733.1 <> na Primary Assembly 113902039 na 129S1_SvImJ#1#chr15 assembled-molecule 15 Chromosome OW971735.1 <> na Primary Assembly 101204263 na 129S1_SvImJ#1#chr16 assembled-molecule 16 Chromosome OW971736.1 <> na Primary Assembly 94845348 na 129S1_SvImJ#1#chr17 assembled-molecule 17 Chromosome OW971737.1 <> na Primary Assembly 90615792 na 129S1_SvImJ#1#chr18 assembled-molecule 18 Chromosome OW971738.1 <> na Primary Assembly 87975307 na 129S1_SvImJ#1#chr19 assembled-molecule 19 Chromosome OW971739.1 <> na Primary Assembly 58017828 na 129S1_SvImJ#1#chrX assembled-molecule X Chromosome OW971725.1 <> na Primary Assembly 145680608 na 129S1_SvImJ#1#34 unplaced-scaffold na na CAKLHM020000001.1 <> na Primary Assembly 71885 na 129S1_SvImJ#1#162 unplaced-scaffold na na CAKLHM020000002.1 <> na Primary Assembly 16224 na 129S1_SvImJ#1#95 unplaced-scaffold na na CAKLHM020000003.1 <> na Primary Assembly 30242 na 129S1_SvImJ#1#79 unplaced-scaffold na na CAKLHM020000004.1 <> na Primary Assembly 30197 na 129S1_SvImJ#1#180 unplaced-scaffold na na CAKLHM020000005.1 <> na Primary Assembly 17308 na 129S1_SvImJ#1#121 unplaced-scaffold na na CAKLHM020000006.1 <> na Primary Assembly 38455 na 129S1_SvImJ#1#130 unplaced-scaffold na na CAKLHM020000007.1 <> na Primary Assembly 24442 na 129S1_SvImJ#1#127 unplaced-scaffold na na CAKLHM020000008.1 <> na Primary Assembly 22510 na 129S1_SvImJ#1#91 unplaced-scaffold na na CAKLHM020000009.1 <> na Primary Assembly 12557 na 129S1_SvImJ#1#46 unplaced-scaffold na na CAKLHM020000010.1 <> na Primary Assembly 45171 na 129S1_SvImJ#1#64 unplaced-scaffold na na CAKLHM020000011.1 <> na Primary Assembly 74353 na 129S1_SvImJ#1#163 unplaced-scaffold na na CAKLHM020000012.1 <> na Primary Assembly 37278 na 129S1_SvImJ#1#126 unplaced-scaffold na na CAKLHM020000013.1 <> na Primary Assembly 25007 na 129S1_SvImJ#1#115 unplaced-scaffold na na CAKLHM020000014.1 <> na Primary Assembly 31946 na 129S1_SvImJ#1#72 unplaced-scaffold na na CAKLHM020000015.1 <> na Primary Assembly 159106 na 129S1_SvImJ#1#138 unplaced-scaffold na na CAKLHM020000016.1 <> na Primary Assembly 24879 na 129S1_SvImJ#1#155 unplaced-scaffold na na CAKLHM020000017.1 <> na Primary Assembly 24460 na 129S1_SvImJ#1#36 unplaced-scaffold na na CAKLHM020000018.1 <> na Primary Assembly 105860 na 129S1_SvImJ#1#52 unplaced-scaffold na na CAKLHM020000019.1 <> na Primary Assembly 31146 na 129S1_SvImJ#1#142 unplaced-scaffold na na CAKLHM020000020.1 <> na Primary Assembly 10750 na 129S1_SvImJ#1#44 unplaced-scaffold na na CAKLHM020000021.1 <> na Primary Assembly 57181 na 129S1_SvImJ#1#66 unplaced-scaffold na na CAKLHM020000022.1 <> na Primary Assembly 22621 na 129S1_SvImJ#1#100 unplaced-scaffold na na CAKLHM020000023.1 <> na Primary Assembly 12822 na 129S1_SvImJ#1#178 unplaced-scaffold na na CAKLHM020000024.1 <> na Primary Assembly 16528 na 129S1_SvImJ#1#25 unplaced-scaffold na na CAKLHM020000025.1 <> na Primary Assembly 15475 na 129S1_SvImJ#1#85 unplaced-scaffold na na CAKLHM020000026.1 <> na Primary Assembly 28645 na 129S1_SvImJ#1#144 unplaced-scaffold na na CAKLHM020000027.1 <> na Primary Assembly 10739 na 129S1_SvImJ#1#143 unplaced-scaffold na na CAKLHM020000028.1 <> na Primary Assembly 23407 na 129S1_SvImJ#1#59 unplaced-scaffold na na CAKLHM020000029.1 <> na Primary Assembly 18333 na 129S1_SvImJ#1#21 unplaced-scaffold na na CAKLHM020000030.1 <> na Primary Assembly 517144 na 129S1_SvImJ#1#81 unplaced-scaffold na na CAKLHM020000031.1 <> na Primary Assembly 10023 na 129S1_SvImJ#1#108 unplaced-scaffold na na CAKLHM020000032.1 <> na Primary Assembly 74712 na 129S1_SvImJ#1#170 unplaced-scaffold na na CAKLHM020000033.1 <> na Primary Assembly 11698 na 129S1_SvImJ#1#150 unplaced-scaffold na na CAKLHM020000034.1 <> na Primary Assembly 52591 na 129S1_SvImJ#1#62 unplaced-scaffold na na CAKLHM020000035.1 <> na Primary Assembly 23507 na 129S1_SvImJ#1#147 unplaced-scaffold na na CAKLHM020000036.1 <> na Primary Assembly 22673 na 129S1_SvImJ#1#141 unplaced-scaffold na na CAKLHM020000037.1 <> na Primary Assembly 21623 na 129S1_SvImJ#1#98 unplaced-scaffold na na CAKLHM020000038.1 <> na Primary Assembly 16774 na 129S1_SvImJ#1#93 unplaced-scaffold na na CAKLHM020000039.1 <> na Primary Assembly 21105 na 129S1_SvImJ#1#110 unplaced-scaffold na na CAKLHM020000040.1 <> na Primary Assembly 17277 na 129S1_SvImJ#1#56 unplaced-scaffold na na CAKLHM020000041.1 <> na Primary Assembly 49599 na 129S1_SvImJ#1#32 unplaced-scaffold na na CAKLHM020000042.1 <> na Primary Assembly 123899 na 129S1_SvImJ#1#27 unplaced-scaffold na na CAKLHM020000043.1 <> na Primary Assembly 10958 na 129S1_SvImJ#1#87 unplaced-scaffold na na CAKLHM020000044.1 <> na Primary Assembly 29397 na 129S1_SvImJ#1#69 unplaced-scaffold na na CAKLHM020000045.1 <> na Primary Assembly 11791 na 129S1_SvImJ#1#158 unplaced-scaffold na na CAKLHM020000046.1 <> na Primary Assembly 129371 na 129S1_SvImJ#1#135 unplaced-scaffold na na CAKLHM020000047.1 <> na Primary Assembly 11123 na 129S1_SvImJ#1#80 unplaced-scaffold na na CAKLHM020000048.1 <> na Primary Assembly 48336 na 129S1_SvImJ#1#74 unplaced-scaffold na na CAKLHM020000049.1 <> na Primary Assembly 21495 na 129S1_SvImJ#1#185 unplaced-scaffold na na CAKLHM020000050.1 <> na Primary Assembly 46665 na 129S1_SvImJ#1#118 unplaced-scaffold na na CAKLHM020000051.1 <> na Primary Assembly 40734 na 129S1_SvImJ#1#169 unplaced-scaffold na na CAKLHM020000052.1 <> na Primary Assembly 37107 na 129S1_SvImJ#1#146 unplaced-scaffold na na CAKLHM020000053.1 <> na Primary Assembly 18166 na 129S1_SvImJ#1#39 unplaced-scaffold na na CAKLHM020000054.1 <> na Primary Assembly 26260 na 129S1_SvImJ#1#167 unplaced-scaffold na na CAKLHM020000055.1 <> na Primary Assembly 18885 na 129S1_SvImJ#1#161 unplaced-scaffold na na CAKLHM020000056.1 <> na Primary Assembly 55344 na 129S1_SvImJ#1#175 unplaced-scaffold na na CAKLHM020000057.1 <> na Primary Assembly 15940 na 129S1_SvImJ#1#42 unplaced-scaffold na na CAKLHM020000058.1 <> na Primary Assembly 15140 na 129S1_SvImJ#1#122 unplaced-scaffold na na CAKLHM020000059.1 <> na Primary Assembly 38993 na 129S1_SvImJ#1#54 unplaced-scaffold na na CAKLHM020000060.1 <> na Primary Assembly 25700 na 129S1_SvImJ#1#90 unplaced-scaffold na na CAKLHM020000061.1 <> na Primary Assembly 11240 na 129S1_SvImJ#1#28 unplaced-scaffold na na CAKLHM020000062.1 <> na Primary Assembly 119913 na 129S1_SvImJ#1#88 unplaced-scaffold na na CAKLHM020000063.1 <> na Primary Assembly 37199 na 129S1_SvImJ#1#49 unplaced-scaffold na na CAKLHM020000064.1 <> na Primary Assembly 94254 na 129S1_SvImJ#1#105 unplaced-scaffold na na CAKLHM020000065.1 <> na Primary Assembly 12073 na 129S1_SvImJ#1#123 unplaced-scaffold na na CAKLHM020000066.1 <> na Primary Assembly 60952 na 129S1_SvImJ#1#149 unplaced-scaffold na na CAKLHM020000067.1 <> na Primary Assembly 21645 na 129S1_SvImJ#1#124 unplaced-scaffold na na CAKLHM020000068.1 <> na Primary Assembly 10310 na 129S1_SvImJ#1#23 unplaced-scaffold na na CAKLHM020000069.1 <> na Primary Assembly 16687 na 129S1_SvImJ#1#83 unplaced-scaffold na na CAKLHM020000070.1 <> na Primary Assembly 34814 na 129S1_SvImJ#1#97 unplaced-scaffold na na CAKLHM020000071.1 <> na Primary Assembly 23845 na 129S1_SvImJ#1#76 unplaced-scaffold na na CAKLHM020000072.1 <> na Primary Assembly 25168 na 129S1_SvImJ#1#137 unplaced-scaffold na na CAKLHM020000073.1 <> na Primary Assembly 13900 na 129S1_SvImJ#1#65 unplaced-scaffold na na CAKLHM020000074.1 <> na Primary Assembly 52882 na 129S1_SvImJ#1#131 unplaced-scaffold na na CAKLHM020000075.1 <> na Primary Assembly 23198 na 129S1_SvImJ#1#120 unplaced-scaffold na na CAKLHM020000076.1 <> na Primary Assembly 96429 na 129S1_SvImJ#1#31 unplaced-scaffold na na CAKLHM020000077.1 <> na Primary Assembly 25510 na 129S1_SvImJ#1#61 unplaced-scaffold na na CAKLHM020000078.1 <> na Primary Assembly 72014 na 129S1_SvImJ#1#179 unplaced-scaffold na na CAKLHM020000079.1 <> na Primary Assembly 21247 na 129S1_SvImJ#1#94 unplaced-scaffold na na CAKLHM020000080.1 <> na Primary Assembly 124748 na 129S1_SvImJ#1#35 unplaced-scaffold na na CAKLHM020000081.1 <> na Primary Assembly 26138 na 129S1_SvImJ#1#181 unplaced-scaffold na na CAKLHM020000082.1 <> na Primary Assembly 97492 na 129S1_SvImJ#1#50 unplaced-scaffold na na CAKLHM020000083.1 <> na Primary Assembly 39255 na 129S1_SvImJ#1#187 unplaced-scaffold na na CAKLHM020000084.1 <> na Primary Assembly 10079 na 129S1_SvImJ#1#78 unplaced-scaffold na na CAKLHM020000085.1 <> na Primary Assembly 18691 na 129S1_SvImJ#1#145 unplaced-scaffold na na CAKLHM020000086.1 <> na Primary Assembly 31115 na 129S1_SvImJ#1#128 unplaced-scaffold na na CAKLHM020000087.1 <> na Primary Assembly 45171 na 129S1_SvImJ#1#186 unplaced-scaffold na na CAKLHM020000088.1 <> na Primary Assembly 14901 na 129S1_SvImJ#1#57 unplaced-scaffold na na CAKLHM020000089.1 <> na Primary Assembly 19973 na 129S1_SvImJ#1#136 unplaced-scaffold na na CAKLHM020000090.1 <> na Primary Assembly 123031 na 129S1_SvImJ#1#26 unplaced-scaffold na na CAKLHM020000091.1 <> na Primary Assembly 48336 na 129S1_SvImJ#1#86 unplaced-scaffold na na CAKLHM020000092.1 <> na Primary Assembly 25399 na 129S1_SvImJ#1#109 unplaced-scaffold na na CAKLHM020000093.1 <> na Primary Assembly 31836 na 129S1_SvImJ#1#73 unplaced-scaffold na na CAKLHM020000094.1 <> na Primary Assembly 29496 na 129S1_SvImJ#1#101 unplaced-scaffold na na CAKLHM020000095.1 <> na Primary Assembly 17547 na 129S1_SvImJ#1#58 unplaced-scaffold na na CAKLHM020000096.1 <> na Primary Assembly 10820 na 129S1_SvImJ#1#112 unplaced-scaffold na na CAKLHM020000097.1 <> na Primary Assembly 11132 na 129S1_SvImJ#1#107 unplaced-scaffold na na CAKLHM020000098.1 <> na Primary Assembly 56186 na 129S1_SvImJ#1#45 unplaced-scaffold na na CAKLHM020000099.1 <> na Primary Assembly 26311 na 129S1_SvImJ#1#96 unplaced-scaffold na na CAKLHM020000100.1 <> na Primary Assembly 15189 na 129S1_SvImJ#1#152 unplaced-scaffold na na CAKLHM020000101.1 <> na Primary Assembly 77372 na 129S1_SvImJ#1#41 unplaced-scaffold na na CAKLHM020000102.1 <> na Primary Assembly 11067 na 129S1_SvImJ#1#176 unplaced-scaffold na na CAKLHM020000103.1 <> na Primary Assembly 26781 na 129S1_SvImJ#1#114 unplaced-scaffold na na CAKLHM020000104.1 <> na Primary Assembly 37648 na 129S1_SvImJ#1#113 unplaced-scaffold na na CAKLHM020000105.1 <> na Primary Assembly 34462 na 129S1_SvImJ#1#165 unplaced-scaffold na na CAKLHM020000106.1 <> na Primary Assembly 10861 na 129S1_SvImJ#1#171 unplaced-scaffold na na CAKLHM020000107.1 <> na Primary Assembly 22371 na 129S1_SvImJ#1#177 unplaced-scaffold na na CAKLHM020000108.1 <> na Primary Assembly 18534 na 129S1_SvImJ#1#106 unplaced-scaffold na na CAKLHM020000109.1 <> na Primary Assembly 18344 na 129S1_SvImJ#1#154 unplaced-scaffold na na CAKLHM020000110.1 <> na Primary Assembly 10465 na 129S1_SvImJ#1#153 unplaced-scaffold na na CAKLHM020000111.1 <> na Primary Assembly 61074 na 129S1_SvImJ#1#70 unplaced-scaffold na na CAKLHM020000112.1 <> na Primary Assembly 24996 na 129S1_SvImJ#1#84 unplaced-scaffold na na CAKLHM020000113.1 <> na Primary Assembly 52913 na 129S1_SvImJ#1#24 unplaced-scaffold na na CAKLHM020000114.1 <> na Primary Assembly 30923 na 129S1_SvImJ#1#92 unplaced-scaffold na na CAKLHM020000115.1 <> na Primary Assembly 16233 na 129S1_SvImJ#1#102 unplaced-scaffold na na CAKLHM020000116.1 <> na Primary Assembly 21222 na 129S1_SvImJ#1#117 unplaced-scaffold na na CAKLHM020000117.1 <> na Primary Assembly 12908 na 129S1_SvImJ#1#111 unplaced-scaffold na na CAKLHM020000118.1 <> na Primary Assembly 26364 na 129S1_SvImJ#1#173 unplaced-scaffold na na CAKLHM020000119.1 <> na Primary Assembly 17486 na 129S1_SvImJ#1#33 unplaced-scaffold na na CAKLHM020000120.1 <> na Primary Assembly 21457 na 129S1_SvImJ#1#68 unplaced-scaffold na na CAKLHM020000121.1 <> na Primary Assembly 84312 na 129S1_SvImJ#1#157 unplaced-scaffold na na CAKLHM020000122.1 <> na Primary Assembly 18392 na 129S1_SvImJ#1#63 unplaced-scaffold na na CAKLHM020000123.1 <> na Primary Assembly 28368 na 129S1_SvImJ#1#151 unplaced-scaffold na na CAKLHM020000124.1 <> na Primary Assembly 12244 na 129S1_SvImJ#1#38 unplaced-scaffold na na CAKLHM020000125.1 <> na Primary Assembly 19352 na 129S1_SvImJ#1#140 unplaced-scaffold na na CAKLHM020000126.1 <> na Primary Assembly 31280 na 129S1_SvImJ#1#40 unplaced-scaffold na na CAKLHM020000127.1 <> na Primary Assembly 52724 na 129S1_SvImJ#1#156 unplaced-scaffold na na CAKLHM020000128.1 <> na Primary Assembly 61604 na 129S1_SvImJ#1#103 unplaced-scaffold na na CAKLHM020000129.1 <> na Primary Assembly 171370 na 129S1_SvImJ#1#104 unplaced-scaffold na na CAKLHM020000130.1 <> na Primary Assembly 23748 na 129S1_SvImJ#1#99 unplaced-scaffold na na CAKLHM020000131.1 <> na Primary Assembly 76145 na 129S1_SvImJ#1#172 unplaced-scaffold na na CAKLHM020000132.1 <> na Primary Assembly 58031 na 129S1_SvImJ#1#75 unplaced-scaffold na na CAKLHM020000133.1 <> na Primary Assembly 61453 na 129S1_SvImJ#1#116 unplaced-scaffold na na CAKLHM020000134.1 <> na Primary Assembly 60926 na 129S1_SvImJ#1#47 unplaced-scaffold na na CAKLHM020000135.1 <> na Primary Assembly 37959 na 129S1_SvImJ#1#71 unplaced-scaffold na na CAKLHM020000136.1 <> na Primary Assembly 44661 na 129S1_SvImJ#1#148 unplaced-scaffold na na CAKLHM020000137.1 <> na Primary Assembly 12519 na 129S1_SvImJ#1#125 unplaced-scaffold na na CAKLHM020000138.1 <> na Primary Assembly 131522 na 129S1_SvImJ#1#29 unplaced-scaffold na na CAKLHM020000139.1 <> na Primary Assembly 60585 na 129S1_SvImJ#1#89 unplaced-scaffold na na CAKLHM020000140.1 <> na Primary Assembly 27979 na 129S1_SvImJ#1#132 unplaced-scaffold na na CAKLHM020000141.1 <> na Primary Assembly 10797 na 129S1_SvImJ#1#48 unplaced-scaffold na na CAKLHM020000142.1 <> na Primary Assembly 198321 na 129S1_SvImJ#1#55 unplaced-scaffold na na CAKLHM020000143.1 <> na Primary Assembly 14221 na 129S1_SvImJ#1#30 unplaced-scaffold na na CAKLHM020000144.1 <> na Primary Assembly 10624 na 129S1_SvImJ#1#160 unplaced-scaffold na na CAKLHM020000145.1 <> na Primary Assembly 32121 na 129S1_SvImJ#1#60 unplaced-scaffold na na CAKLHM020000146.1 <> na Primary Assembly 38893 na 129S1_SvImJ#1#43 unplaced-scaffold na na CAKLHM020000147.1 <> na Primary Assembly 22667 na 129S1_SvImJ#1#182 unplaced-scaffold na na CAKLHM020000148.1 <> na Primary Assembly 30407 na 129S1_SvImJ#1#51 unplaced-scaffold na na CAKLHM020000149.1 <> na Primary Assembly 23909 na 129S1_SvImJ#1#134 unplaced-scaffold na na CAKLHM020000150.1 <> na Primary Assembly 35628 na 129S1_SvImJ#1#133 unplaced-scaffold na na CAKLHM020000151.1 <> na Primary Assembly 11279 na 129S1_SvImJ#1#37 unplaced-scaffold na na CAKLHM020000152.1 <> na Primary Assembly 33337 na 129S1_SvImJ#1#22 unplaced-scaffold na na CAKLHM020000153.1 <> na Primary Assembly 44042 na 129S1_SvImJ#1#159 unplaced-scaffold na na CAKLHM020000154.1 <> na Primary Assembly 17728 na 129S1_SvImJ#1#168 unplaced-scaffold na na CAKLHM020000155.1 <> na Primary Assembly 42205 na 129S1_SvImJ#1#183 unplaced-scaffold na na CAKLHM020000156.1 <> na Primary Assembly 54507 na 129S1_SvImJ#1#184 unplaced-scaffold na na CAKLHM020000157.1 <> na Primary Assembly 25215 na 129S1_SvImJ#1#67 unplaced-scaffold na na CAKLHM020000158.1 <> na Primary Assembly 22064 na 129S1_SvImJ#1#119 unplaced-scaffold na na CAKLHM020000159.1 <> na Primary Assembly 33370 na 129S1_SvImJ#1#MT assembled-molecule MIT Mitochondrion OW971740.1 <> na non-nuclear 16300 na