# Assembly name: A_J_v3 # Organism name: Mus musculus (house mouse) # Taxid: 10090 # BioSample: SAMEA9544179 # BioProject: PRJEB47108 # Submitter: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE # Date: 2022-06-30 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAKLHP02 # Genome coverage: 40x # GenBank assembly accession: GCA_921998355.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_921998354.2 Primary Assembly ## GCA_921998356.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name A_J#1#chr1 assembled-molecule 1 Chromosome OW971741.1 <> na Primary Assembly 192437849 na A_J#1#chr2 assembled-molecule 2 Chromosome OW971742.1 <> na Primary Assembly 177903603 na A_J#1#chr3 assembled-molecule 3 Chromosome OW971743.1 <> na Primary Assembly 156763892 na A_J#1#chr4 assembled-molecule 4 Chromosome OW971745.1 <> na Primary Assembly 149306169 na A_J#1#chr5 assembled-molecule 5 Chromosome OW971746.1 <> na Primary Assembly 145117840 na A_J#1#chr6 assembled-molecule 6 Chromosome OW971747.1 <> na Primary Assembly 145922365 na A_J#1#chr7 assembled-molecule 7 Chromosome OW971748.1 <> na Primary Assembly 135949505 na A_J#1#chr8 assembled-molecule 8 Chromosome OW971750.1 <> na Primary Assembly 124455652 na A_J#1#chr9 assembled-molecule 9 Chromosome OW971751.1 <> na Primary Assembly 120824376 na A_J#1#chr10 assembled-molecule 10 Chromosome OW971749.1 <> na Primary Assembly 127192181 na A_J#1#chr11 assembled-molecule 11 Chromosome OW971752.1 <> na Primary Assembly 118915852 na A_J#1#chr12 assembled-molecule 12 Chromosome OW971754.1 <> na Primary Assembly 115069314 na A_J#1#chr13 assembled-molecule 13 Chromosome OW971753.1 <> na Primary Assembly 115222695 na A_J#1#chr14 assembled-molecule 14 Chromosome OW971755.1 <> na Primary Assembly 113709041 na A_J#1#chr15 assembled-molecule 15 Chromosome OW971756.1 <> na Primary Assembly 101074573 na A_J#1#chr16 assembled-molecule 16 Chromosome OW971757.1 <> na Primary Assembly 94605886 na A_J#1#chr17 assembled-molecule 17 Chromosome OW971758.1 <> na Primary Assembly 91989066 na A_J#1#chr18 assembled-molecule 18 Chromosome OW971759.1 <> na Primary Assembly 87897412 na A_J#1#chr19 assembled-molecule 19 Chromosome OW971760.1 <> na Primary Assembly 58145355 na A_J#1#chrX assembled-molecule X Chromosome OW971744.1 <> na Primary Assembly 150996385 na A_J#1#chrX_unloc_1 unplaced-scaffold na na CAKLHP020000001.1 <> na Primary Assembly 557495 na A_J#1#chr4_unloc_1 unplaced-scaffold na na CAKLHP020000002.1 <> na Primary Assembly 113507 na A_J#1#129 unplaced-scaffold na na CAKLHP020000003.1 <> na Primary Assembly 168364 na A_J#1#86 unplaced-scaffold na na CAKLHP020000004.1 <> na Primary Assembly 101231 na A_J#1#118 unplaced-scaffold na na CAKLHP020000005.1 <> na Primary Assembly 95031 na A_J#1#117 unplaced-scaffold na na CAKLHP020000006.1 <> na Primary Assembly 94026 na A_J#1#99 unplaced-scaffold na na CAKLHP020000007.1 <> na Primary Assembly 91546 na A_J#1#61 unplaced-scaffold na na CAKLHP020000008.1 <> na Primary Assembly 80652 na A_J#1#96 unplaced-scaffold na na CAKLHP020000009.1 <> na Primary Assembly 75634 na A_J#1#37 unplaced-scaffold na na CAKLHP020000010.1 <> na Primary Assembly 74916 na A_J#1#135 unplaced-scaffold na na CAKLHP020000011.1 <> na Primary Assembly 70667 na A_J#1#57 unplaced-scaffold na na CAKLHP020000012.1 <> na Primary Assembly 69435 na A_J#1#98 unplaced-scaffold na na CAKLHP020000013.1 <> na Primary Assembly 66124 na A_J#1#132 unplaced-scaffold na na CAKLHP020000014.1 <> na Primary Assembly 64254 na A_J#1#106 unplaced-scaffold na na CAKLHP020000015.1 <> na Primary Assembly 63818 na A_J#1#78 unplaced-scaffold na na CAKLHP020000016.1 <> na Primary Assembly 62440 na A_J#1#148 unplaced-scaffold na na CAKLHP020000017.1 <> na Primary Assembly 61110 na A_J#1#67 unplaced-scaffold na na CAKLHP020000018.1 <> na Primary Assembly 54034 na A_J#1#119 unplaced-scaffold na na CAKLHP020000019.1 <> na Primary Assembly 53657 na A_J#1#29 unplaced-scaffold na na CAKLHP020000020.1 <> na Primary Assembly 50826 na A_J#1#25 unplaced-scaffold na na CAKLHP020000021.1 <> na Primary Assembly 50460 na A_J#1#122 unplaced-scaffold na na CAKLHP020000022.1 <> na Primary Assembly 47832 na A_J#1#68 unplaced-scaffold na na CAKLHP020000023.1 <> na Primary Assembly 47140 na A_J#1#69 unplaced-scaffold na na CAKLHP020000024.1 <> na Primary Assembly 43682 na A_J#1#143 unplaced-scaffold na na CAKLHP020000025.1 <> na Primary Assembly 43342 na A_J#1#91 unplaced-scaffold na na CAKLHP020000026.1 <> na Primary Assembly 42464 na A_J#1#35 unplaced-scaffold na na CAKLHP020000027.1 <> na Primary Assembly 41430 na A_J#1#51 unplaced-scaffold na na CAKLHP020000028.1 <> na Primary Assembly 39951 na A_J#1#112 unplaced-scaffold na na CAKLHP020000029.1 <> na Primary Assembly 39040 na A_J#1#70 unplaced-scaffold na na CAKLHP020000030.1 <> na Primary Assembly 37483 na A_J#1#156 unplaced-scaffold na na CAKLHP020000031.1 <> na Primary Assembly 35158 na A_J#1#139 unplaced-scaffold na na CAKLHP020000032.1 <> na Primary Assembly 32997 na A_J#1#23 unplaced-scaffold na na CAKLHP020000033.1 <> na Primary Assembly 32124 na A_J#1#126 unplaced-scaffold na na CAKLHP020000034.1 <> na Primary Assembly 30045 na A_J#1#53 unplaced-scaffold na na CAKLHP020000035.1 <> na Primary Assembly 27384 na A_J#1#45 unplaced-scaffold na na CAKLHP020000036.1 <> na Primary Assembly 25986 na A_J#1#34 unplaced-scaffold na na CAKLHP020000037.1 <> na Primary Assembly 24762 na A_J#1#32 unplaced-scaffold na na CAKLHP020000038.1 <> na Primary Assembly 23633 na A_J#1#141 unplaced-scaffold na na CAKLHP020000039.1 <> na Primary Assembly 22987 na A_J#1#79 unplaced-scaffold na na CAKLHP020000040.1 <> na Primary Assembly 21089 na A_J#1#101 unplaced-scaffold na na CAKLHP020000041.1 <> na Primary Assembly 19953 na A_J#1#120 unplaced-scaffold na na CAKLHP020000042.1 <> na Primary Assembly 18732 na A_J#1#109 unplaced-scaffold na na CAKLHP020000043.1 <> na Primary Assembly 17799 na A_J#1#55 unplaced-scaffold na na CAKLHP020000044.1 <> na Primary Assembly 16802 na A_J#1#103 unplaced-scaffold na na CAKLHP020000045.1 <> na Primary Assembly 16365 na A_J#1#123 unplaced-scaffold na na CAKLHP020000046.1 <> na Primary Assembly 15539 na A_J#1#94 unplaced-scaffold na na CAKLHP020000047.1 <> na Primary Assembly 14958 na A_J#1#121 unplaced-scaffold na na CAKLHP020000048.1 <> na Primary Assembly 13648 na A_J#1#116 unplaced-scaffold na na CAKLHP020000049.1 <> na Primary Assembly 12922 na A_J#1#151 unplaced-scaffold na na CAKLHP020000050.1 <> na Primary Assembly 12145 na A_J#1#113 unplaced-scaffold na na CAKLHP020000051.1 <> na Primary Assembly 11543 na A_J#1#137 unplaced-scaffold na na CAKLHP020000052.1 <> na Primary Assembly 10588 na A_J#1#44 unplaced-scaffold na na CAKLHP020000053.1 <> na Primary Assembly 10107 na A_J#1#22 unplaced-scaffold na na CAKLHP020000054.1 <> na Primary Assembly 21011 na A_J#1#24 unplaced-scaffold na na CAKLHP020000055.1 <> na Primary Assembly 23472 na A_J#1#26 unplaced-scaffold na na CAKLHP020000056.1 <> na Primary Assembly 10262 na A_J#1#27 unplaced-scaffold na na CAKLHP020000057.1 <> na Primary Assembly 18824 na A_J#1#28 unplaced-scaffold na na CAKLHP020000058.1 <> na Primary Assembly 12761 na A_J#1#30 unplaced-scaffold na na CAKLHP020000059.1 <> na Primary Assembly 64603 na A_J#1#33 unplaced-scaffold na na CAKLHP020000060.1 <> na Primary Assembly 10428 na A_J#1#36 unplaced-scaffold na na CAKLHP020000061.1 <> na Primary Assembly 14680 na A_J#1#38 unplaced-scaffold na na CAKLHP020000062.1 <> na Primary Assembly 17674 na A_J#1#39 unplaced-scaffold na na CAKLHP020000063.1 <> na Primary Assembly 10141 na A_J#1#40 unplaced-scaffold na na CAKLHP020000064.1 <> na Primary Assembly 32655 na A_J#1#41 unplaced-scaffold na na CAKLHP020000065.1 <> na Primary Assembly 35160 na A_J#1#43 unplaced-scaffold na na CAKLHP020000066.1 <> na Primary Assembly 17810 na A_J#1#46 unplaced-scaffold na na CAKLHP020000067.1 <> na Primary Assembly 40613 na A_J#1#47 unplaced-scaffold na na CAKLHP020000068.1 <> na Primary Assembly 10605 na A_J#1#48 unplaced-scaffold na na CAKLHP020000069.1 <> na Primary Assembly 14667 na A_J#1#49 unplaced-scaffold na na CAKLHP020000070.1 <> na Primary Assembly 13183 na A_J#1#52 unplaced-scaffold na na CAKLHP020000071.1 <> na Primary Assembly 28053 na A_J#1#54 unplaced-scaffold na na CAKLHP020000072.1 <> na Primary Assembly 17115 na A_J#1#56 unplaced-scaffold na na CAKLHP020000073.1 <> na Primary Assembly 49112 na A_J#1#58 unplaced-scaffold na na CAKLHP020000074.1 <> na Primary Assembly 39052 na A_J#1#59 unplaced-scaffold na na CAKLHP020000075.1 <> na Primary Assembly 19071 na A_J#1#60 unplaced-scaffold na na CAKLHP020000076.1 <> na Primary Assembly 11927 na A_J#1#63 unplaced-scaffold na na CAKLHP020000077.1 <> na Primary Assembly 16584 na A_J#1#64 unplaced-scaffold na na CAKLHP020000078.1 <> na Primary Assembly 12095 na A_J#1#65 unplaced-scaffold na na CAKLHP020000079.1 <> na Primary Assembly 13368 na A_J#1#66 unplaced-scaffold na na CAKLHP020000080.1 <> na Primary Assembly 23883 na A_J#1#71 unplaced-scaffold na na CAKLHP020000081.1 <> na Primary Assembly 57414 na A_J#1#72 unplaced-scaffold na na CAKLHP020000082.1 <> na Primary Assembly 12401 na A_J#1#73 unplaced-scaffold na na CAKLHP020000083.1 <> na Primary Assembly 23101 na A_J#1#74 unplaced-scaffold na na CAKLHP020000084.1 <> na Primary Assembly 14279 na A_J#1#75 unplaced-scaffold na na CAKLHP020000085.1 <> na Primary Assembly 11399 na A_J#1#76 unplaced-scaffold na na CAKLHP020000086.1 <> na Primary Assembly 11220 na A_J#1#77 unplaced-scaffold na na CAKLHP020000087.1 <> na Primary Assembly 15593 na A_J#1#80 unplaced-scaffold na na CAKLHP020000088.1 <> na Primary Assembly 17515 na A_J#1#81 unplaced-scaffold na na CAKLHP020000089.1 <> na Primary Assembly 35750 na A_J#1#82 unplaced-scaffold na na CAKLHP020000090.1 <> na Primary Assembly 53613 na A_J#1#83 unplaced-scaffold na na CAKLHP020000091.1 <> na Primary Assembly 12861 na A_J#1#84 unplaced-scaffold na na CAKLHP020000092.1 <> na Primary Assembly 31576 na A_J#1#87 unplaced-scaffold na na CAKLHP020000093.1 <> na Primary Assembly 26473 na A_J#1#88 unplaced-scaffold na na CAKLHP020000094.1 <> na Primary Assembly 15535 na A_J#1#89 unplaced-scaffold na na CAKLHP020000095.1 <> na Primary Assembly 10735 na A_J#1#90 unplaced-scaffold na na CAKLHP020000096.1 <> na Primary Assembly 16796 na A_J#1#92 unplaced-scaffold na na CAKLHP020000097.1 <> na Primary Assembly 11880 na A_J#1#93 unplaced-scaffold na na CAKLHP020000098.1 <> na Primary Assembly 26321 na A_J#1#95 unplaced-scaffold na na CAKLHP020000099.1 <> na Primary Assembly 17425 na A_J#1#97 unplaced-scaffold na na CAKLHP020000100.1 <> na Primary Assembly 19866 na A_J#1#100 unplaced-scaffold na na CAKLHP020000101.1 <> na Primary Assembly 14800 na A_J#1#102 unplaced-scaffold na na CAKLHP020000102.1 <> na Primary Assembly 13421 na A_J#1#104 unplaced-scaffold na na CAKLHP020000103.1 <> na Primary Assembly 12185 na A_J#1#105 unplaced-scaffold na na CAKLHP020000104.1 <> na Primary Assembly 20325 na A_J#1#107 unplaced-scaffold na na CAKLHP020000105.1 <> na Primary Assembly 10183 na A_J#1#108 unplaced-scaffold na na CAKLHP020000106.1 <> na Primary Assembly 16585 na A_J#1#110 unplaced-scaffold na na CAKLHP020000107.1 <> na Primary Assembly 15036 na A_J#1#111 unplaced-scaffold na na CAKLHP020000108.1 <> na Primary Assembly 13203 na A_J#1#114 unplaced-scaffold na na CAKLHP020000109.1 <> na Primary Assembly 15577 na A_J#1#115 unplaced-scaffold na na CAKLHP020000110.1 <> na Primary Assembly 45278 na A_J#1#124 unplaced-scaffold na na CAKLHP020000111.1 <> na Primary Assembly 10183 na A_J#1#125 unplaced-scaffold na na CAKLHP020000112.1 <> na Primary Assembly 38126 na A_J#1#127 unplaced-scaffold na na CAKLHP020000113.1 <> na Primary Assembly 10639 na A_J#1#128 unplaced-scaffold na na CAKLHP020000114.1 <> na Primary Assembly 18237 na A_J#1#130 unplaced-scaffold na na CAKLHP020000115.1 <> na Primary Assembly 16093 na A_J#1#131 unplaced-scaffold na na CAKLHP020000116.1 <> na Primary Assembly 18121 na A_J#1#133 unplaced-scaffold na na CAKLHP020000117.1 <> na Primary Assembly 12798 na A_J#1#134 unplaced-scaffold na na CAKLHP020000118.1 <> na Primary Assembly 10422 na A_J#1#136 unplaced-scaffold na na CAKLHP020000119.1 <> na Primary Assembly 11941 na A_J#1#138 unplaced-scaffold na na CAKLHP020000120.1 <> na Primary Assembly 43582 na A_J#1#140 unplaced-scaffold na na CAKLHP020000121.1 <> na Primary Assembly 13192 na A_J#1#142 unplaced-scaffold na na CAKLHP020000122.1 <> na Primary Assembly 11952 na A_J#1#144 unplaced-scaffold na na CAKLHP020000123.1 <> na Primary Assembly 35042 na A_J#1#145 unplaced-scaffold na na CAKLHP020000124.1 <> na Primary Assembly 12018 na A_J#1#146 unplaced-scaffold na na CAKLHP020000125.1 <> na Primary Assembly 31899 na A_J#1#147 unplaced-scaffold na na CAKLHP020000126.1 <> na Primary Assembly 22585 na A_J#1#149 unplaced-scaffold na na CAKLHP020000127.1 <> na Primary Assembly 15172 na A_J#1#152 unplaced-scaffold na na CAKLHP020000128.1 <> na Primary Assembly 23737 na A_J#1#153 unplaced-scaffold na na CAKLHP020000129.1 <> na Primary Assembly 25978 na A_J#1#154 unplaced-scaffold na na CAKLHP020000130.1 <> na Primary Assembly 23365 na A_J#1#155 unplaced-scaffold na na CAKLHP020000131.1 <> na Primary Assembly 43008 na A_J#1#157 unplaced-scaffold na na CAKLHP020000132.1 <> na Primary Assembly 20816 na A_J#1#158 unplaced-scaffold na na CAKLHP020000133.1 <> na Primary Assembly 25805 na A_J#1#159 unplaced-scaffold na na CAKLHP020000134.1 <> na Primary Assembly 15433 na A_J#1#160 unplaced-scaffold na na CAKLHP020000135.1 <> na Primary Assembly 10973 na A_J#1#161 unplaced-scaffold na na CAKLHP020000136.1 <> na Primary Assembly 22708 na A_J#1#163 unplaced-scaffold na na CAKLHP020000137.1 <> na Primary Assembly 15918 na A_J#1#MT assembled-molecule MIT Mitochondrion OW971761.1 <> na non-nuclear 16300 na