# Assembly name: NOD_ShiLtJ_v3 # Organism name: Mus musculus (house mouse) # Taxid: 10090 # BioSample: SAMEA9544187 # BioProject: PRJEB47108 # Submitter: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE # Date: 2022-07-01 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAKLHO02 # Genome coverage: 40x # GenBank assembly accession: GCA_921998325.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_921998324.2 Primary Assembly ## GCA_921998326.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name NOD_ShiLtJ#1#chr1 assembled-molecule 1 Chromosome OW971783.1 <> na Primary Assembly 192317747 na NOD_ShiLtJ#1#chr2 assembled-molecule 2 Chromosome OW971784.1 <> na Primary Assembly 175739506 na NOD_ShiLtJ#1#chr3 assembled-molecule 3 Chromosome OW971785.1 <> na Primary Assembly 157877467 na NOD_ShiLtJ#1#chr4 assembled-molecule 4 Chromosome OW971786.1 <> na Primary Assembly 148348604 na NOD_ShiLtJ#1#chr5 assembled-molecule 5 Chromosome OW971788.1 <> na Primary Assembly 144859791 na NOD_ShiLtJ#1#chr6 assembled-molecule 6 Chromosome OW971789.1 <> na Primary Assembly 146533518 na NOD_ShiLtJ#1#chr7 assembled-molecule 7 Chromosome OW971790.1 <> na Primary Assembly 133237724 na NOD_ShiLtJ#1#chr8 assembled-molecule 8 Chromosome OW971792.1 <> na Primary Assembly 124682026 na NOD_ShiLtJ#1#chr9 assembled-molecule 9 Chromosome OW971793.1 <> na Primary Assembly 121132517 na NOD_ShiLtJ#1#chr10 assembled-molecule 10 Chromosome OW971791.1 <> na Primary Assembly 127269091 na NOD_ShiLtJ#1#chr11 assembled-molecule 11 Chromosome OW971794.1 <> na Primary Assembly 119263463 na NOD_ShiLtJ#1#chr12 assembled-molecule 12 Chromosome OW971797.1 <> na Primary Assembly 111740221 na NOD_ShiLtJ#1#chr13 assembled-molecule 13 Chromosome OW971795.1 <> na Primary Assembly 114942767 na NOD_ShiLtJ#1#chr14 assembled-molecule 14 Chromosome OW971796.1 <> na Primary Assembly 113938999 na NOD_ShiLtJ#1#chr15 assembled-molecule 15 Chromosome OW971798.1 <> na Primary Assembly 101071700 na NOD_ShiLtJ#1#chr16 assembled-molecule 16 Chromosome OW971799.1 <> na Primary Assembly 94826401 na NOD_ShiLtJ#1#chr17 assembled-molecule 17 Chromosome OW971800.1 <> na Primary Assembly 90608376 na NOD_ShiLtJ#1#chr18 assembled-molecule 18 Chromosome OW971801.1 <> na Primary Assembly 87697973 na NOD_ShiLtJ#1#chr19 assembled-molecule 19 Chromosome OW971802.1 <> na Primary Assembly 57932146 na NOD_ShiLtJ#1#chrX assembled-molecule X Chromosome OW971787.1 <> na Primary Assembly 147422267 na NOD_ShiLtJ#1#chr4_unloc_1 unplaced-scaffold na na CAKLHO020000001.1 <> na Primary Assembly 216336 na NOD_ShiLtJ#1#chr4_unloc_3 unplaced-scaffold na na CAKLHO020000002.1 <> na Primary Assembly 11884 na NOD_ShiLtJ#1#chr4_unloc_2 unplaced-scaffold na na CAKLHO020000003.1 <> na Primary Assembly 183388 na NOD_ShiLtJ#1#chrX_unloc_6 unplaced-scaffold na na CAKLHO020000004.1 <> na Primary Assembly 432926 na NOD_ShiLtJ#1#chrX_unloc_10 unplaced-scaffold na na CAKLHO020000005.1 <> na Primary Assembly 30219 na NOD_ShiLtJ#1#chrX_unloc_11 unplaced-scaffold na na CAKLHO020000006.1 <> na Primary Assembly 28376 na NOD_ShiLtJ#1#chrX_unloc_12 unplaced-scaffold na na CAKLHO020000007.1 <> na Primary Assembly 27590 na NOD_ShiLtJ#1#chrX_unloc_13 unplaced-scaffold na na CAKLHO020000008.1 <> na Primary Assembly 26854 na NOD_ShiLtJ#1#chrX_unloc_1 unplaced-scaffold na na CAKLHO020000009.1 <> na Primary Assembly 148311 na NOD_ShiLtJ#1#chrX_unloc_9 unplaced-scaffold na na CAKLHO020000010.1 <> na Primary Assembly 37260 na NOD_ShiLtJ#1#chrX_unloc_5 unplaced-scaffold na na CAKLHO020000011.1 <> na Primary Assembly 64251 na NOD_ShiLtJ#1#chrX_unloc_15 unplaced-scaffold na na CAKLHO020000012.1 <> na Primary Assembly 17741 na NOD_ShiLtJ#1#chrX_unloc_16 unplaced-scaffold na na CAKLHO020000013.1 <> na Primary Assembly 16818 na NOD_ShiLtJ#1#chrX_unloc_2 unplaced-scaffold na na CAKLHO020000014.1 <> na Primary Assembly 77186 na NOD_ShiLtJ#1#chrX_unloc_17 unplaced-scaffold na na CAKLHO020000015.1 <> na Primary Assembly 15663 na NOD_ShiLtJ#1#chrX_unloc_18 unplaced-scaffold na na CAKLHO020000016.1 <> na Primary Assembly 15199 na NOD_ShiLtJ#1#chrX_unloc_19 unplaced-scaffold na na CAKLHO020000017.1 <> na Primary Assembly 14419 na NOD_ShiLtJ#1#chrX_unloc_3 unplaced-scaffold na na CAKLHO020000018.1 <> na Primary Assembly 69069 na NOD_ShiLtJ#1#chrX_unloc_4 unplaced-scaffold na na CAKLHO020000019.1 <> na Primary Assembly 67075 na NOD_ShiLtJ#1#chrX_unloc_20 unplaced-scaffold na na CAKLHO020000020.1 <> na Primary Assembly 13272 na NOD_ShiLtJ#1#chrX_unloc_7 unplaced-scaffold na na CAKLHO020000021.1 <> na Primary Assembly 48064 na NOD_ShiLtJ#1#chrX_unloc_8 unplaced-scaffold na na CAKLHO020000022.1 <> na Primary Assembly 38559 na NOD_ShiLtJ#1#chrX_unloc_14 unplaced-scaffold na na CAKLHO020000023.1 <> na Primary Assembly 20678 na NOD_ShiLtJ#1#chr5_unloc_1 unplaced-scaffold na na CAKLHO020000024.1 <> na Primary Assembly 79713 na NOD_ShiLtJ#1#chr5_unloc_2 unplaced-scaffold na na CAKLHO020000025.1 <> na Primary Assembly 55372 na NOD_ShiLtJ#1#chr5_unloc_3 unplaced-scaffold na na CAKLHO020000026.1 <> na Primary Assembly 43622 na NOD_ShiLtJ#1#chr5_unloc_4 unplaced-scaffold na na CAKLHO020000027.1 <> na Primary Assembly 41423 na NOD_ShiLtJ#1#chr5_unloc_5 unplaced-scaffold na na CAKLHO020000028.1 <> na Primary Assembly 39975 na NOD_ShiLtJ#1#chr7_unloc_2 unplaced-scaffold na na CAKLHO020000029.1 <> na Primary Assembly 72216 na NOD_ShiLtJ#1#chr7_unloc_1 unplaced-scaffold na na CAKLHO020000030.1 <> na Primary Assembly 120349 na NOD_ShiLtJ#1#chr7_unloc_3 unplaced-scaffold na na CAKLHO020000031.1 <> na Primary Assembly 32211 na NOD_ShiLtJ#1#chr8_unloc_1 unplaced-scaffold na na CAKLHO020000032.1 <> na Primary Assembly 110462 na NOD_ShiLtJ#1#chr14_unloc_1 unplaced-scaffold na na CAKLHO020000033.1 <> na Primary Assembly 138369 na NOD_ShiLtJ#1#65 unplaced-scaffold na na CAKLHO020000034.1 <> na Primary Assembly 57411 na NOD_ShiLtJ#1#35 unplaced-scaffold na na CAKLHO020000035.1 <> na Primary Assembly 62830 na NOD_ShiLtJ#1#36 unplaced-scaffold na na CAKLHO020000036.1 <> na Primary Assembly 62073 na NOD_ShiLtJ#1#121 unplaced-scaffold na na CAKLHO020000037.1 <> na Primary Assembly 88422 na NOD_ShiLtJ#1#100 unplaced-scaffold na na CAKLHO020000038.1 <> na Primary Assembly 46238 na NOD_ShiLtJ#1#124 unplaced-scaffold na na CAKLHO020000039.1 <> na Primary Assembly 110519 na NOD_ShiLtJ#1#72 unplaced-scaffold na na CAKLHO020000040.1 <> na Primary Assembly 102890 na NOD_ShiLtJ#1#157 unplaced-scaffold na na CAKLHO020000041.1 <> na Primary Assembly 94020 na NOD_ShiLtJ#1#110 unplaced-scaffold na na CAKLHO020000042.1 <> na Primary Assembly 91077 na NOD_ShiLtJ#1#133 unplaced-scaffold na na CAKLHO020000043.1 <> na Primary Assembly 88351 na NOD_ShiLtJ#1#69 unplaced-scaffold na na CAKLHO020000044.1 <> na Primary Assembly 80919 na NOD_ShiLtJ#1#56 unplaced-scaffold na na CAKLHO020000045.1 <> na Primary Assembly 78990 na NOD_ShiLtJ#1#49 unplaced-scaffold na na CAKLHO020000046.1 <> na Primary Assembly 75261 na NOD_ShiLtJ#1#95 unplaced-scaffold na na CAKLHO020000047.1 <> na Primary Assembly 70831 na NOD_ShiLtJ#1#122 unplaced-scaffold na na CAKLHO020000048.1 <> na Primary Assembly 66935 na NOD_ShiLtJ#1#88 unplaced-scaffold na na CAKLHO020000049.1 <> na Primary Assembly 65395 na NOD_ShiLtJ#1#70 unplaced-scaffold na na CAKLHO020000050.1 <> na Primary Assembly 64700 na NOD_ShiLtJ#1#175 unplaced-scaffold na na CAKLHO020000051.1 <> na Primary Assembly 57620 na NOD_ShiLtJ#1#22 unplaced-scaffold na na CAKLHO020000052.1 <> na Primary Assembly 23974 na NOD_ShiLtJ#1#23 unplaced-scaffold na na CAKLHO020000053.1 <> na Primary Assembly 33139 na NOD_ShiLtJ#1#24 unplaced-scaffold na na CAKLHO020000054.1 <> na Primary Assembly 11444 na NOD_ShiLtJ#1#25 unplaced-scaffold na na CAKLHO020000055.1 <> na Primary Assembly 13246 na NOD_ShiLtJ#1#26 unplaced-scaffold na na CAKLHO020000056.1 <> na Primary Assembly 21562 na NOD_ShiLtJ#1#27 unplaced-scaffold na na CAKLHO020000057.1 <> na Primary Assembly 12383 na NOD_ShiLtJ#1#28 unplaced-scaffold na na CAKLHO020000058.1 <> na Primary Assembly 26616 na NOD_ShiLtJ#1#29 unplaced-scaffold na na CAKLHO020000059.1 <> na Primary Assembly 14502 na NOD_ShiLtJ#1#31 unplaced-scaffold na na CAKLHO020000060.1 <> na Primary Assembly 39565 na NOD_ShiLtJ#1#34 unplaced-scaffold na na CAKLHO020000061.1 <> na Primary Assembly 19636 na NOD_ShiLtJ#1#38 unplaced-scaffold na na CAKLHO020000062.1 <> na Primary Assembly 10886 na NOD_ShiLtJ#1#40 unplaced-scaffold na na CAKLHO020000063.1 <> na Primary Assembly 26342 na NOD_ShiLtJ#1#45 unplaced-scaffold na na CAKLHO020000064.1 <> na Primary Assembly 31204 na NOD_ShiLtJ#1#46 unplaced-scaffold na na CAKLHO020000065.1 <> na Primary Assembly 15454 na NOD_ShiLtJ#1#47 unplaced-scaffold na na CAKLHO020000066.1 <> na Primary Assembly 10582 na NOD_ShiLtJ#1#48 unplaced-scaffold na na CAKLHO020000067.1 <> na Primary Assembly 43085 na NOD_ShiLtJ#1#50 unplaced-scaffold na na CAKLHO020000068.1 <> na Primary Assembly 66800 na NOD_ShiLtJ#1#54 unplaced-scaffold na na CAKLHO020000069.1 <> na Primary Assembly 32480 na NOD_ShiLtJ#1#55 unplaced-scaffold na na CAKLHO020000070.1 <> na Primary Assembly 17409 na NOD_ShiLtJ#1#57 unplaced-scaffold na na CAKLHO020000071.1 <> na Primary Assembly 18348 na NOD_ShiLtJ#1#58 unplaced-scaffold na na CAKLHO020000072.1 <> na Primary Assembly 16124 na NOD_ShiLtJ#1#59 unplaced-scaffold na na CAKLHO020000073.1 <> na Primary Assembly 10094 na NOD_ShiLtJ#1#60 unplaced-scaffold na na CAKLHO020000074.1 <> na Primary Assembly 25704 na NOD_ShiLtJ#1#62 unplaced-scaffold na na CAKLHO020000075.1 <> na Primary Assembly 11122 na NOD_ShiLtJ#1#63 unplaced-scaffold na na CAKLHO020000076.1 <> na Primary Assembly 19280 na NOD_ShiLtJ#1#64 unplaced-scaffold na na CAKLHO020000077.1 <> na Primary Assembly 14746 na NOD_ShiLtJ#1#66 unplaced-scaffold na na CAKLHO020000078.1 <> na Primary Assembly 37628 na NOD_ShiLtJ#1#67 unplaced-scaffold na na CAKLHO020000079.1 <> na Primary Assembly 15572 na NOD_ShiLtJ#1#68 unplaced-scaffold na na CAKLHO020000080.1 <> na Primary Assembly 16566 na NOD_ShiLtJ#1#71 unplaced-scaffold na na CAKLHO020000081.1 <> na Primary Assembly 19154 na NOD_ShiLtJ#1#73 unplaced-scaffold na na CAKLHO020000082.1 <> na Primary Assembly 23312 na NOD_ShiLtJ#1#76 unplaced-scaffold na na CAKLHO020000083.1 <> na Primary Assembly 10885 na NOD_ShiLtJ#1#77 unplaced-scaffold na na CAKLHO020000084.1 <> na Primary Assembly 11119 na NOD_ShiLtJ#1#78 unplaced-scaffold na na CAKLHO020000085.1 <> na Primary Assembly 10642 na NOD_ShiLtJ#1#79 unplaced-scaffold na na CAKLHO020000086.1 <> na Primary Assembly 52871 na NOD_ShiLtJ#1#80 unplaced-scaffold na na CAKLHO020000087.1 <> na Primary Assembly 28558 na NOD_ShiLtJ#1#81 unplaced-scaffold na na CAKLHO020000088.1 <> na Primary Assembly 10639 na NOD_ShiLtJ#1#83 unplaced-scaffold na na CAKLHO020000089.1 <> na Primary Assembly 14335 na NOD_ShiLtJ#1#85 unplaced-scaffold na na CAKLHO020000090.1 <> na Primary Assembly 32523 na NOD_ShiLtJ#1#86 unplaced-scaffold na na CAKLHO020000091.1 <> na Primary Assembly 15478 na NOD_ShiLtJ#1#90 unplaced-scaffold na na CAKLHO020000092.1 <> na Primary Assembly 10887 na NOD_ShiLtJ#1#92 unplaced-scaffold na na CAKLHO020000093.1 <> na Primary Assembly 47222 na NOD_ShiLtJ#1#94 unplaced-scaffold na na CAKLHO020000094.1 <> na Primary Assembly 16658 na NOD_ShiLtJ#1#97 unplaced-scaffold na na CAKLHO020000095.1 <> na Primary Assembly 23980 na NOD_ShiLtJ#1#98 unplaced-scaffold na na CAKLHO020000096.1 <> na Primary Assembly 18866 na NOD_ShiLtJ#1#101 unplaced-scaffold na na CAKLHO020000097.1 <> na Primary Assembly 14531 na NOD_ShiLtJ#1#102 unplaced-scaffold na na CAKLHO020000098.1 <> na Primary Assembly 59702 na NOD_ShiLtJ#1#103 unplaced-scaffold na na CAKLHO020000099.1 <> na Primary Assembly 20186 na NOD_ShiLtJ#1#105 unplaced-scaffold na na CAKLHO020000100.1 <> na Primary Assembly 10812 na NOD_ShiLtJ#1#106 unplaced-scaffold na na CAKLHO020000101.1 <> na Primary Assembly 11711 na NOD_ShiLtJ#1#107 unplaced-scaffold na na CAKLHO020000102.1 <> na Primary Assembly 10414 na NOD_ShiLtJ#1#108 unplaced-scaffold na na CAKLHO020000103.1 <> na Primary Assembly 47773 na NOD_ShiLtJ#1#109 unplaced-scaffold na na CAKLHO020000104.1 <> na Primary Assembly 27487 na NOD_ShiLtJ#1#111 unplaced-scaffold na na CAKLHO020000105.1 <> na Primary Assembly 28152 na NOD_ShiLtJ#1#112 unplaced-scaffold na na CAKLHO020000106.1 <> na Primary Assembly 12485 na NOD_ShiLtJ#1#113 unplaced-scaffold na na CAKLHO020000107.1 <> na Primary Assembly 26446 na NOD_ShiLtJ#1#116 unplaced-scaffold na na CAKLHO020000108.1 <> na Primary Assembly 12226 na NOD_ShiLtJ#1#117 unplaced-scaffold na na CAKLHO020000109.1 <> na Primary Assembly 10171 na NOD_ShiLtJ#1#118 unplaced-scaffold na na CAKLHO020000110.1 <> na Primary Assembly 11629 na NOD_ShiLtJ#1#120 unplaced-scaffold na na CAKLHO020000111.1 <> na Primary Assembly 12920 na NOD_ShiLtJ#1#123 unplaced-scaffold na na CAKLHO020000112.1 <> na Primary Assembly 20111 na NOD_ShiLtJ#1#125 unplaced-scaffold na na CAKLHO020000113.1 <> na Primary Assembly 25943 na NOD_ShiLtJ#1#126 unplaced-scaffold na na CAKLHO020000114.1 <> na Primary Assembly 23772 na NOD_ShiLtJ#1#127 unplaced-scaffold na na CAKLHO020000115.1 <> na Primary Assembly 18789 na NOD_ShiLtJ#1#128 unplaced-scaffold na na CAKLHO020000116.1 <> na Primary Assembly 30649 na NOD_ShiLtJ#1#129 unplaced-scaffold na na CAKLHO020000117.1 <> na Primary Assembly 15566 na NOD_ShiLtJ#1#130 unplaced-scaffold na na CAKLHO020000118.1 <> na Primary Assembly 11447 na NOD_ShiLtJ#1#135 unplaced-scaffold na na CAKLHO020000119.1 <> na Primary Assembly 17551 na NOD_ShiLtJ#1#136 unplaced-scaffold na na CAKLHO020000120.1 <> na Primary Assembly 12035 na NOD_ShiLtJ#1#137 unplaced-scaffold na na CAKLHO020000121.1 <> na Primary Assembly 11350 na NOD_ShiLtJ#1#138 unplaced-scaffold na na CAKLHO020000122.1 <> na Primary Assembly 23060 na NOD_ShiLtJ#1#139 unplaced-scaffold na na CAKLHO020000123.1 <> na Primary Assembly 34231 na NOD_ShiLtJ#1#140 unplaced-scaffold na na CAKLHO020000124.1 <> na Primary Assembly 23963 na NOD_ShiLtJ#1#141 unplaced-scaffold na na CAKLHO020000125.1 <> na Primary Assembly 50183 na NOD_ShiLtJ#1#142 unplaced-scaffold na na CAKLHO020000126.1 <> na Primary Assembly 28989 na NOD_ShiLtJ#1#143 unplaced-scaffold na na CAKLHO020000127.1 <> na Primary Assembly 57046 na NOD_ShiLtJ#1#144 unplaced-scaffold na na CAKLHO020000128.1 <> na Primary Assembly 56099 na NOD_ShiLtJ#1#145 unplaced-scaffold na na CAKLHO020000129.1 <> na Primary Assembly 16258 na NOD_ShiLtJ#1#148 unplaced-scaffold na na CAKLHO020000130.1 <> na Primary Assembly 46002 na NOD_ShiLtJ#1#149 unplaced-scaffold na na CAKLHO020000131.1 <> na Primary Assembly 14345 na NOD_ShiLtJ#1#151 unplaced-scaffold na na CAKLHO020000132.1 <> na Primary Assembly 27497 na NOD_ShiLtJ#1#154 unplaced-scaffold na na CAKLHO020000133.1 <> na Primary Assembly 17099 na NOD_ShiLtJ#1#155 unplaced-scaffold na na CAKLHO020000134.1 <> na Primary Assembly 19048 na NOD_ShiLtJ#1#158 unplaced-scaffold na na CAKLHO020000135.1 <> na Primary Assembly 15194 na NOD_ShiLtJ#1#160 unplaced-scaffold na na CAKLHO020000136.1 <> na Primary Assembly 13279 na NOD_ShiLtJ#1#161 unplaced-scaffold na na CAKLHO020000137.1 <> na Primary Assembly 25046 na NOD_ShiLtJ#1#162 unplaced-scaffold na na CAKLHO020000138.1 <> na Primary Assembly 25768 na NOD_ShiLtJ#1#164 unplaced-scaffold na na CAKLHO020000139.1 <> na Primary Assembly 11877 na NOD_ShiLtJ#1#165 unplaced-scaffold na na CAKLHO020000140.1 <> na Primary Assembly 18450 na NOD_ShiLtJ#1#166 unplaced-scaffold na na CAKLHO020000141.1 <> na Primary Assembly 35158 na NOD_ShiLtJ#1#167 unplaced-scaffold na na CAKLHO020000142.1 <> na Primary Assembly 19695 na NOD_ShiLtJ#1#168 unplaced-scaffold na na CAKLHO020000143.1 <> na Primary Assembly 11532 na NOD_ShiLtJ#1#169 unplaced-scaffold na na CAKLHO020000144.1 <> na Primary Assembly 13454 na NOD_ShiLtJ#1#171 unplaced-scaffold na na CAKLHO020000145.1 <> na Primary Assembly 11359 na NOD_ShiLtJ#1#173 unplaced-scaffold na na CAKLHO020000146.1 <> na Primary Assembly 23586 na NOD_ShiLtJ#1#174 unplaced-scaffold na na CAKLHO020000147.1 <> na Primary Assembly 41209 na NOD_ShiLtJ#1#MT assembled-molecule MIT Mitochondrion OW971803.1 <> na non-nuclear 16301 na