# Assembly name: C3H_HeJ_v3 # Organism name: Mus musculus (house mouse) # Taxid: 10090 # BioSample: SAMEA9544182 # BioProject: PRJEB47108 # Submitter: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE # Date: 2022-07-01 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAKLHI02 # Genome coverage: 40x # GenBank assembly accession: GCA_921997125.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_921997124.2 Primary Assembly ## GCA_921997126.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name C3H_HeJ#1#chr1 assembled-molecule 1 Chromosome OW971846.1 <> na Primary Assembly 192734160 na C3H_HeJ#1#chr2 assembled-molecule 2 Chromosome OW971855.1 <> na Primary Assembly 176863632 na C3H_HeJ#1#chr3 assembled-molecule 3 Chromosome OW971864.1 <> na Primary Assembly 156242237 na C3H_HeJ#1#chr4 assembled-molecule 4 Chromosome OW971856.1 <> na Primary Assembly 151578546 na C3H_HeJ#1#chr5 assembled-molecule 5 Chromosome OW971857.1 <> na Primary Assembly 147393320 na C3H_HeJ#1#chr6 assembled-molecule 6 Chromosome OW971858.1 <> na Primary Assembly 146000485 na C3H_HeJ#1#chr7 assembled-molecule 7 Chromosome OW971859.1 <> na Primary Assembly 133371210 na C3H_HeJ#1#chr8 assembled-molecule 8 Chromosome OW971862.1 <> na Primary Assembly 124575252 na C3H_HeJ#1#chr9 assembled-molecule 9 Chromosome OW971860.1 <> na Primary Assembly 121129556 na C3H_HeJ#1#chr10 assembled-molecule 10 Chromosome OW971863.1 <> na Primary Assembly 127227482 na C3H_HeJ#1#chr11 assembled-molecule 11 Chromosome OW971847.1 <> na Primary Assembly 119111306 na C3H_HeJ#1#chr12 assembled-molecule 12 Chromosome OW971848.1 <> na Primary Assembly 115939335 na C3H_HeJ#1#chr13 assembled-molecule 13 Chromosome OW971865.1 <> na Primary Assembly 115723577 na C3H_HeJ#1#chr14 assembled-molecule 14 Chromosome OW971849.1 <> na Primary Assembly 115092357 na C3H_HeJ#1#chr15 assembled-molecule 15 Chromosome OW971850.1 <> na Primary Assembly 101285478 na C3H_HeJ#1#chr16 assembled-molecule 16 Chromosome OW971851.1 <> na Primary Assembly 94980622 na C3H_HeJ#1#chr17 assembled-molecule 17 Chromosome OW971852.1 <> na Primary Assembly 90930989 na C3H_HeJ#1#chr18 assembled-molecule 18 Chromosome OW971853.1 <> na Primary Assembly 88011295 na C3H_HeJ#1#chr19 assembled-molecule 19 Chromosome OW971854.1 <> na Primary Assembly 57981240 na C3H_HeJ#1#chrX assembled-molecule X Chromosome OW971861.1 <> na Primary Assembly 150844641 na C3H_HeJ#1#chrX_unloc_1 unplaced-scaffold na na CAKLHI020000001.1 <> na Primary Assembly 400448 na C3H_HeJ#1#23 unplaced-scaffold na na CAKLHI020000002.1 <> na Primary Assembly 53342 na C3H_HeJ#1#58 unplaced-scaffold na na CAKLHI020000003.1 <> na Primary Assembly 48145 na C3H_HeJ#1#60 unplaced-scaffold na na CAKLHI020000004.1 <> na Primary Assembly 32647 na C3H_HeJ#1#63 unplaced-scaffold na na CAKLHI020000005.1 <> na Primary Assembly 26433 na C3H_HeJ#1#26 unplaced-scaffold na na CAKLHI020000006.1 <> na Primary Assembly 11141 na C3H_HeJ#1#28 unplaced-scaffold na na CAKLHI020000007.1 <> na Primary Assembly 87159 na C3H_HeJ#1#30 unplaced-scaffold na na CAKLHI020000008.1 <> na Primary Assembly 92447 na C3H_HeJ#1#31 unplaced-scaffold na na CAKLHI020000009.1 <> na Primary Assembly 19815 na C3H_HeJ#1#33 unplaced-scaffold na na CAKLHI020000010.1 <> na Primary Assembly 16109 na C3H_HeJ#1#34 unplaced-scaffold na na CAKLHI020000011.1 <> na Primary Assembly 77104 na C3H_HeJ#1#36 unplaced-scaffold na na CAKLHI020000012.1 <> na Primary Assembly 20201 na C3H_HeJ#1#38 unplaced-scaffold na na CAKLHI020000013.1 <> na Primary Assembly 135020 na C3H_HeJ#1#39 unplaced-scaffold na na CAKLHI020000014.1 <> na Primary Assembly 14952 na C3H_HeJ#1#40 unplaced-scaffold na na CAKLHI020000015.1 <> na Primary Assembly 64732 na C3H_HeJ#1#42 unplaced-scaffold na na CAKLHI020000016.1 <> na Primary Assembly 23216 na C3H_HeJ#1#47 unplaced-scaffold na na CAKLHI020000017.1 <> na Primary Assembly 88464 na C3H_HeJ#1#48 unplaced-scaffold na na CAKLHI020000018.1 <> na Primary Assembly 85245 na C3H_HeJ#1#49 unplaced-scaffold na na CAKLHI020000019.1 <> na Primary Assembly 22183 na C3H_HeJ#1#51 unplaced-scaffold na na CAKLHI020000020.1 <> na Primary Assembly 23004 na C3H_HeJ#1#53 unplaced-scaffold na na CAKLHI020000021.1 <> na Primary Assembly 77628 na C3H_HeJ#1#55 unplaced-scaffold na na CAKLHI020000022.1 <> na Primary Assembly 110179 na C3H_HeJ#1#70 unplaced-scaffold na na CAKLHI020000023.1 <> na Primary Assembly 70048 na C3H_HeJ#1#71 unplaced-scaffold na na CAKLHI020000024.1 <> na Primary Assembly 53108 na C3H_HeJ#1#74 unplaced-scaffold na na CAKLHI020000025.1 <> na Primary Assembly 74361 na C3H_HeJ#1#75 unplaced-scaffold na na CAKLHI020000026.1 <> na Primary Assembly 55255 na C3H_HeJ#1#77 unplaced-scaffold na na CAKLHI020000027.1 <> na Primary Assembly 25039 na C3H_HeJ#1#79 unplaced-scaffold na na CAKLHI020000028.1 <> na Primary Assembly 53818 na C3H_HeJ#1#82 unplaced-scaffold na na CAKLHI020000029.1 <> na Primary Assembly 28149 na C3H_HeJ#1#86 unplaced-scaffold na na CAKLHI020000030.1 <> na Primary Assembly 40997 na C3H_HeJ#1#90 unplaced-scaffold na na CAKLHI020000031.1 <> na Primary Assembly 10234 na C3H_HeJ#1#92 unplaced-scaffold na na CAKLHI020000032.1 <> na Primary Assembly 25858 na C3H_HeJ#1#95 unplaced-scaffold na na CAKLHI020000033.1 <> na Primary Assembly 28355 na C3H_HeJ#1#97 unplaced-scaffold na na CAKLHI020000034.1 <> na Primary Assembly 27034 na C3H_HeJ#1#100 unplaced-scaffold na na CAKLHI020000035.1 <> na Primary Assembly 56641 na C3H_HeJ#1#103 unplaced-scaffold na na CAKLHI020000036.1 <> na Primary Assembly 26328 na C3H_HeJ#1#104 unplaced-scaffold na na CAKLHI020000037.1 <> na Primary Assembly 123272 na C3H_HeJ#1#105 unplaced-scaffold na na CAKLHI020000038.1 <> na Primary Assembly 14711 na C3H_HeJ#1#107 unplaced-scaffold na na CAKLHI020000039.1 <> na Primary Assembly 82779 na C3H_HeJ#1#108 unplaced-scaffold na na CAKLHI020000040.1 <> na Primary Assembly 14547 na C3H_HeJ#1#112 unplaced-scaffold na na CAKLHI020000041.1 <> na Primary Assembly 53444 na C3H_HeJ#1#117 unplaced-scaffold na na CAKLHI020000042.1 <> na Primary Assembly 27635 na C3H_HeJ#1#118 unplaced-scaffold na na CAKLHI020000043.1 <> na Primary Assembly 88902 na C3H_HeJ#1#120 unplaced-scaffold na na CAKLHI020000044.1 <> na Primary Assembly 58163 na C3H_HeJ#1#122 unplaced-scaffold na na CAKLHI020000045.1 <> na Primary Assembly 16587 na C3H_HeJ#1#126 unplaced-scaffold na na CAKLHI020000046.1 <> na Primary Assembly 16632 na C3H_HeJ#1#128 unplaced-scaffold na na CAKLHI020000047.1 <> na Primary Assembly 72140 na C3H_HeJ#1#133 unplaced-scaffold na na CAKLHI020000048.1 <> na Primary Assembly 31630 na C3H_HeJ#1#135 unplaced-scaffold na na CAKLHI020000049.1 <> na Primary Assembly 24196 na C3H_HeJ#1#136 unplaced-scaffold na na CAKLHI020000050.1 <> na Primary Assembly 80024 na C3H_HeJ#1#141 unplaced-scaffold na na CAKLHI020000051.1 <> na Primary Assembly 10760 na C3H_HeJ#1#143 unplaced-scaffold na na CAKLHI020000052.1 <> na Primary Assembly 87150 na C3H_HeJ#1#146 unplaced-scaffold na na CAKLHI020000053.1 <> na Primary Assembly 36707 na C3H_HeJ#1#148 unplaced-scaffold na na CAKLHI020000054.1 <> na Primary Assembly 58478 na C3H_HeJ#1#150 unplaced-scaffold na na CAKLHI020000055.1 <> na Primary Assembly 52045 na C3H_HeJ#1#152 unplaced-scaffold na na CAKLHI020000056.1 <> na Primary Assembly 94090 na C3H_HeJ#1#153 unplaced-scaffold na na CAKLHI020000057.1 <> na Primary Assembly 60297 na C3H_HeJ#1#157 unplaced-scaffold na na CAKLHI020000058.1 <> na Primary Assembly 28020 na C3H_HeJ#1#158 unplaced-scaffold na na CAKLHI020000059.1 <> na Primary Assembly 70773 na C3H_HeJ#1#161 unplaced-scaffold na na CAKLHI020000060.1 <> na Primary Assembly 70891 na C3H_HeJ#1#163 unplaced-scaffold na na CAKLHI020000061.1 <> na Primary Assembly 75725 na C3H_HeJ#1#164 unplaced-scaffold na na CAKLHI020000062.1 <> na Primary Assembly 28334 na C3H_HeJ#1#168 unplaced-scaffold na na CAKLHI020000063.1 <> na Primary Assembly 84002 na C3H_HeJ#1#170 unplaced-scaffold na na CAKLHI020000064.1 <> na Primary Assembly 17158 na C3H_HeJ#1#173 unplaced-scaffold na na CAKLHI020000065.1 <> na Primary Assembly 29934 na C3H_HeJ#1#175 unplaced-scaffold na na CAKLHI020000066.1 <> na Primary Assembly 54544 na C3H_HeJ#1#22 unplaced-scaffold na na CAKLHI020000067.1 <> na Primary Assembly 17883 na C3H_HeJ#1#24 unplaced-scaffold na na CAKLHI020000068.1 <> na Primary Assembly 25475 na C3H_HeJ#1#25 unplaced-scaffold na na CAKLHI020000069.1 <> na Primary Assembly 12584 na C3H_HeJ#1#27 unplaced-scaffold na na CAKLHI020000070.1 <> na Primary Assembly 30679 na C3H_HeJ#1#29 unplaced-scaffold na na CAKLHI020000071.1 <> na Primary Assembly 11677 na C3H_HeJ#1#32 unplaced-scaffold na na CAKLHI020000072.1 <> na Primary Assembly 61926 na C3H_HeJ#1#35 unplaced-scaffold na na CAKLHI020000073.1 <> na Primary Assembly 50820 na C3H_HeJ#1#37 unplaced-scaffold na na CAKLHI020000074.1 <> na Primary Assembly 11538 na C3H_HeJ#1#41 unplaced-scaffold na na CAKLHI020000075.1 <> na Primary Assembly 60485 na C3H_HeJ#1#43 unplaced-scaffold na na CAKLHI020000076.1 <> na Primary Assembly 12371 na C3H_HeJ#1#44 unplaced-scaffold na na CAKLHI020000077.1 <> na Primary Assembly 14311 na C3H_HeJ#1#45 unplaced-scaffold na na CAKLHI020000078.1 <> na Primary Assembly 12920 na C3H_HeJ#1#46 unplaced-scaffold na na CAKLHI020000079.1 <> na Primary Assembly 11732 na C3H_HeJ#1#50 unplaced-scaffold na na CAKLHI020000080.1 <> na Primary Assembly 33717 na C3H_HeJ#1#52 unplaced-scaffold na na CAKLHI020000081.1 <> na Primary Assembly 10672 na C3H_HeJ#1#54 unplaced-scaffold na na CAKLHI020000082.1 <> na Primary Assembly 11629 na C3H_HeJ#1#56 unplaced-scaffold na na CAKLHI020000083.1 <> na Primary Assembly 19538 na C3H_HeJ#1#59 unplaced-scaffold na na CAKLHI020000084.1 <> na Primary Assembly 10678 na C3H_HeJ#1#61 unplaced-scaffold na na CAKLHI020000085.1 <> na Primary Assembly 21946 na C3H_HeJ#1#62 unplaced-scaffold na na CAKLHI020000086.1 <> na Primary Assembly 26088 na C3H_HeJ#1#64 unplaced-scaffold na na CAKLHI020000087.1 <> na Primary Assembly 14392 na C3H_HeJ#1#65 unplaced-scaffold na na CAKLHI020000088.1 <> na Primary Assembly 10156 na C3H_HeJ#1#66 unplaced-scaffold na na CAKLHI020000089.1 <> na Primary Assembly 12238 na C3H_HeJ#1#68 unplaced-scaffold na na CAKLHI020000090.1 <> na Primary Assembly 18391 na C3H_HeJ#1#69 unplaced-scaffold na na CAKLHI020000091.1 <> na Primary Assembly 20944 na C3H_HeJ#1#72 unplaced-scaffold na na CAKLHI020000092.1 <> na Primary Assembly 10285 na C3H_HeJ#1#73 unplaced-scaffold na na CAKLHI020000093.1 <> na Primary Assembly 17093 na C3H_HeJ#1#76 unplaced-scaffold na na CAKLHI020000094.1 <> na Primary Assembly 21661 na C3H_HeJ#1#78 unplaced-scaffold na na CAKLHI020000095.1 <> na Primary Assembly 34112 na C3H_HeJ#1#80 unplaced-scaffold na na CAKLHI020000096.1 <> na Primary Assembly 11605 na C3H_HeJ#1#81 unplaced-scaffold na na CAKLHI020000097.1 <> na Primary Assembly 24041 na C3H_HeJ#1#83 unplaced-scaffold na na CAKLHI020000098.1 <> na Primary Assembly 17390 na C3H_HeJ#1#84 unplaced-scaffold na na CAKLHI020000099.1 <> na Primary Assembly 14567 na C3H_HeJ#1#85 unplaced-scaffold na na CAKLHI020000100.1 <> na Primary Assembly 12318 na C3H_HeJ#1#87 unplaced-scaffold na na CAKLHI020000101.1 <> na Primary Assembly 14486 na C3H_HeJ#1#88 unplaced-scaffold na na CAKLHI020000102.1 <> na Primary Assembly 22620 na C3H_HeJ#1#89 unplaced-scaffold na na CAKLHI020000103.1 <> na Primary Assembly 24651 na C3H_HeJ#1#91 unplaced-scaffold na na CAKLHI020000104.1 <> na Primary Assembly 56474 na C3H_HeJ#1#93 unplaced-scaffold na na CAKLHI020000105.1 <> na Primary Assembly 40685 na C3H_HeJ#1#94 unplaced-scaffold na na CAKLHI020000106.1 <> na Primary Assembly 16159 na C3H_HeJ#1#96 unplaced-scaffold na na CAKLHI020000107.1 <> na Primary Assembly 47408 na C3H_HeJ#1#98 unplaced-scaffold na na CAKLHI020000108.1 <> na Primary Assembly 10155 na C3H_HeJ#1#99 unplaced-scaffold na na CAKLHI020000109.1 <> na Primary Assembly 25227 na C3H_HeJ#1#101 unplaced-scaffold na na CAKLHI020000110.1 <> na Primary Assembly 23156 na C3H_HeJ#1#102 unplaced-scaffold na na CAKLHI020000111.1 <> na Primary Assembly 20146 na C3H_HeJ#1#109 unplaced-scaffold na na CAKLHI020000112.1 <> na Primary Assembly 11791 na C3H_HeJ#1#110 unplaced-scaffold na na CAKLHI020000113.1 <> na Primary Assembly 11434 na C3H_HeJ#1#111 unplaced-scaffold na na CAKLHI020000114.1 <> na Primary Assembly 35694 na C3H_HeJ#1#113 unplaced-scaffold na na CAKLHI020000115.1 <> na Primary Assembly 23201 na C3H_HeJ#1#114 unplaced-scaffold na na CAKLHI020000116.1 <> na Primary Assembly 12170 na C3H_HeJ#1#116 unplaced-scaffold na na CAKLHI020000117.1 <> na Primary Assembly 13659 na C3H_HeJ#1#119 unplaced-scaffold na na CAKLHI020000118.1 <> na Primary Assembly 31757 na C3H_HeJ#1#121 unplaced-scaffold na na CAKLHI020000119.1 <> na Primary Assembly 18999 na C3H_HeJ#1#123 unplaced-scaffold na na CAKLHI020000120.1 <> na Primary Assembly 14657 na C3H_HeJ#1#124 unplaced-scaffold na na CAKLHI020000121.1 <> na Primary Assembly 35675 na C3H_HeJ#1#125 unplaced-scaffold na na CAKLHI020000122.1 <> na Primary Assembly 16965 na C3H_HeJ#1#127 unplaced-scaffold na na CAKLHI020000123.1 <> na Primary Assembly 10497 na C3H_HeJ#1#129 unplaced-scaffold na na CAKLHI020000124.1 <> na Primary Assembly 26868 na C3H_HeJ#1#131 unplaced-scaffold na na CAKLHI020000125.1 <> na Primary Assembly 30966 na C3H_HeJ#1#132 unplaced-scaffold na na CAKLHI020000126.1 <> na Primary Assembly 34795 na C3H_HeJ#1#134 unplaced-scaffold na na CAKLHI020000127.1 <> na Primary Assembly 38476 na C3H_HeJ#1#137 unplaced-scaffold na na CAKLHI020000128.1 <> na Primary Assembly 13211 na C3H_HeJ#1#138 unplaced-scaffold na na CAKLHI020000129.1 <> na Primary Assembly 13671 na C3H_HeJ#1#139 unplaced-scaffold na na CAKLHI020000130.1 <> na Primary Assembly 10700 na C3H_HeJ#1#140 unplaced-scaffold na na CAKLHI020000131.1 <> na Primary Assembly 13389 na C3H_HeJ#1#142 unplaced-scaffold na na CAKLHI020000132.1 <> na Primary Assembly 10278 na C3H_HeJ#1#144 unplaced-scaffold na na CAKLHI020000133.1 <> na Primary Assembly 10093 na C3H_HeJ#1#145 unplaced-scaffold na na CAKLHI020000134.1 <> na Primary Assembly 38088 na C3H_HeJ#1#147 unplaced-scaffold na na CAKLHI020000135.1 <> na Primary Assembly 14193 na C3H_HeJ#1#149 unplaced-scaffold na na CAKLHI020000136.1 <> na Primary Assembly 10312 na C3H_HeJ#1#151 unplaced-scaffold na na CAKLHI020000137.1 <> na Primary Assembly 19160 na C3H_HeJ#1#154 unplaced-scaffold na na CAKLHI020000138.1 <> na Primary Assembly 19227 na C3H_HeJ#1#155 unplaced-scaffold na na CAKLHI020000139.1 <> na Primary Assembly 10499 na C3H_HeJ#1#156 unplaced-scaffold na na CAKLHI020000140.1 <> na Primary Assembly 13919 na C3H_HeJ#1#159 unplaced-scaffold na na CAKLHI020000141.1 <> na Primary Assembly 14978 na C3H_HeJ#1#160 unplaced-scaffold na na CAKLHI020000142.1 <> na Primary Assembly 12395 na C3H_HeJ#1#162 unplaced-scaffold na na CAKLHI020000143.1 <> na Primary Assembly 22472 na C3H_HeJ#1#165 unplaced-scaffold na na CAKLHI020000144.1 <> na Primary Assembly 15495 na C3H_HeJ#1#166 unplaced-scaffold na na CAKLHI020000145.1 <> na Primary Assembly 10331 na C3H_HeJ#1#167 unplaced-scaffold na na CAKLHI020000146.1 <> na Primary Assembly 15404 na C3H_HeJ#1#169 unplaced-scaffold na na CAKLHI020000147.1 <> na Primary Assembly 17593 na C3H_HeJ#1#171 unplaced-scaffold na na CAKLHI020000148.1 <> na Primary Assembly 16080 na C3H_HeJ#1#172 unplaced-scaffold na na CAKLHI020000149.1 <> na Primary Assembly 16731 na C3H_HeJ#1#174 unplaced-scaffold na na CAKLHI020000150.1 <> na Primary Assembly 21163 na C3H_HeJ#1#MT assembled-molecule MIT Mitochondrion OW971866.1 <> na non-nuclear 16301 na