# Assembly name: Giardia intestinalis isolate AS98 # Organism name: Giardia duodenalis (diplomonads) # Isolate: AS98 # Taxid: 5741 # BioSample: SAMEA3317191 # BioProject: PRJEB8833 # Submitter: KAROLINSKA INSITUTET # Date: 2019-07-19 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: CVLA01 # Assembly method: mira, newbler # Genome coverage: 20x # Sequencing technology: 454 # GenBank assembly accession: GCA_900069105.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_900069104.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name contig1 unplaced-scaffold na na CVLA01000001.1 <> na Primary Assembly 3307879 na contig2 unplaced-scaffold na na CVLA01000002.1 <> na Primary Assembly 2619162 na contig3 unplaced-scaffold na na CVLA01000003.1 <> na Primary Assembly 1805795 na contig4 unplaced-scaffold na na CVLA01000004.1 <> na Primary Assembly 1420294 na contig5 unplaced-scaffold na na CVLA01000005.1 <> na Primary Assembly 1352684 na contig6 unplaced-scaffold na na CVLA01000006.1 <> na Primary Assembly 44837 na contig7 unplaced-scaffold na na CVLA01000007.1 <> na Primary Assembly 41355 na contig8 unplaced-scaffold na na CVLA01000008.1 <> na Primary Assembly 40258 na contig9 unplaced-scaffold na na CVLA01000009.1 <> na Primary Assembly 37963 na contig10 unplaced-scaffold na na CVLA01000010.1 <> na Primary Assembly 35193 na contig11 unplaced-scaffold na na CVLA01000011.1 <> na Primary Assembly 34142 na contig12 unplaced-scaffold na na CVLA01000012.1 <> na Primary Assembly 32112 na contig13 unplaced-scaffold na na CVLA01000013.1 <> na Primary Assembly 29435 na contig14 unplaced-scaffold na na CVLA01000014.1 <> na Primary Assembly 19538 na contig15 unplaced-scaffold na na CVLA01000015.1 <> na Primary Assembly 14087 na contig16 unplaced-scaffold na na CVLA01000016.1 <> na Primary Assembly 11517 na contig17 unplaced-scaffold na na CVLA01000017.1 <> na Primary Assembly 11491 na contig18 unplaced-scaffold na na CVLA01000018.1 <> na Primary Assembly 7406 na contig19 unplaced-scaffold na na CVLA01000019.1 <> na Primary Assembly 5650 na contig20 unplaced-scaffold na na CVLA01000020.1 <> na Primary Assembly 5612 na contig22 unplaced-scaffold na na CVLA01000022.1 <> na Primary Assembly 4769 na contig23 unplaced-scaffold na na CVLA01000023.1 <> na Primary Assembly 4730 na contig24 unplaced-scaffold na na CVLA01000024.1 <> na Primary Assembly 4611 na contig25 unplaced-scaffold na na CVLA01000025.1 <> na Primary Assembly 4606 na contig26 unplaced-scaffold na na CVLA01000026.1 <> na Primary Assembly 4595 na contig27 unplaced-scaffold na na CVLA01000027.1 <> na Primary Assembly 4485 na contig28 unplaced-scaffold na na CVLA01000028.1 <> na Primary Assembly 4075 na contig29 unplaced-scaffold na na CVLA01000029.1 <> na Primary Assembly 4039 na contig30 unplaced-scaffold na na CVLA01000030.1 <> na Primary Assembly 3995 na contig31 unplaced-scaffold na na CVLA01000031.1 <> na Primary Assembly 3918 na contig32 unplaced-scaffold na na CVLA01000032.1 <> na Primary Assembly 3900 na contig33 unplaced-scaffold na na CVLA01000033.1 <> na Primary Assembly 3691 na contig34 unplaced-scaffold na na CVLA01000034.1 <> na Primary Assembly 3536 na contig35 unplaced-scaffold na na CVLA01000035.1 <> na Primary Assembly 3400 na contig36 unplaced-scaffold na na CVLA01000036.1 <> na Primary Assembly 3388 na contig37 unplaced-scaffold na na CVLA01000037.1 <> na Primary Assembly 3361 na contig38 unplaced-scaffold na na CVLA01000038.1 <> na Primary Assembly 3330 na contig39 unplaced-scaffold na na CVLA01000039.1 <> na Primary Assembly 3278 na contig40 unplaced-scaffold na na CVLA01000040.1 <> na Primary Assembly 3263 na contig41 unplaced-scaffold na na CVLA01000041.1 <> na Primary Assembly 3269 na contig42 unplaced-scaffold na na CVLA01000042.1 <> na Primary Assembly 3253 na contig43 unplaced-scaffold na na CVLA01000043.1 <> na Primary Assembly 3211 na contig44 unplaced-scaffold na na CVLA01000044.1 <> na Primary Assembly 3181 na contig45 unplaced-scaffold na na CVLA01000045.1 <> na Primary Assembly 3152 na contig46 unplaced-scaffold na na CVLA01000046.1 <> na Primary Assembly 2874 na contig47 unplaced-scaffold na na CVLA01000047.1 <> na Primary Assembly 2826 na contig48 unplaced-scaffold na na CVLA01000048.1 <> na Primary Assembly 2689 na contig49 unplaced-scaffold na na CVLA01000049.1 <> na Primary Assembly 2596 na contig50 unplaced-scaffold na na CVLA01000050.1 <> na Primary Assembly 2502 na contig51 unplaced-scaffold na na CVLA01000051.1 <> na Primary Assembly 2477 na contig52 unplaced-scaffold na na CVLA01000052.1 <> na Primary Assembly 2466 na contig54 unplaced-scaffold na na CVLA01000054.1 <> na Primary Assembly 2344 na contig55 unplaced-scaffold na na CVLA01000055.1 <> na Primary Assembly 2329 na contig56 unplaced-scaffold na na CVLA01000056.1 <> na Primary Assembly 2301 na contig57 unplaced-scaffold na na CVLA01000057.1 <> na Primary Assembly 2296 na contig61 unplaced-scaffold na na CVLA01000061.1 <> na Primary Assembly 2110 na contig62 unplaced-scaffold na na CVLA01000062.1 <> na Primary Assembly 2060 na contig64 unplaced-scaffold na na CVLA01000064.1 <> na Primary Assembly 2026 na contig65 unplaced-scaffold na na CVLA01000065.1 <> na Primary Assembly 2013 na contig66 unplaced-scaffold na na CVLA01000066.1 <> na Primary Assembly 2009 na contig70 unplaced-scaffold na na CVLA01000070.1 <> na Primary Assembly 1914 na contig72 unplaced-scaffold na na CVLA01000072.1 <> na Primary Assembly 1893 na contig73 unplaced-scaffold na na CVLA01000073.1 <> na Primary Assembly 1863 na contig74 unplaced-scaffold na na CVLA01000074.1 <> na Primary Assembly 1853 na contig77 unplaced-scaffold na na CVLA01000077.1 <> na Primary Assembly 1801 na contig78 unplaced-scaffold na na CVLA01000078.1 <> na Primary Assembly 1801 na contig79 unplaced-scaffold na na CVLA01000079.1 <> na Primary Assembly 1794 na contig81 unplaced-scaffold na na CVLA01000081.1 <> na Primary Assembly 1752 na contig82 unplaced-scaffold na na CVLA01000082.1 <> na Primary Assembly 1737 na contig83 unplaced-scaffold na na CVLA01000083.1 <> na Primary Assembly 1730 na contig89 unplaced-scaffold na na CVLA01000089.1 <> na Primary Assembly 1672 na contig92 unplaced-scaffold na na CVLA01000092.1 <> na Primary Assembly 1646 na contig93 unplaced-scaffold na na CVLA01000093.1 <> na Primary Assembly 1635 na contig94 unplaced-scaffold na na CVLA01000094.1 <> na Primary Assembly 1621 na contig96 unplaced-scaffold na na CVLA01000096.1 <> na Primary Assembly 1600 na contig97 unplaced-scaffold na na CVLA01000097.1 <> na Primary Assembly 1593 na contig98 unplaced-scaffold na na CVLA01000098.1 <> na Primary Assembly 1582 na contig99 unplaced-scaffold na na CVLA01000099.1 <> na Primary Assembly 1576 na contig101 unplaced-scaffold na na CVLA01000101.1 <> na Primary Assembly 1562 na contig103 unplaced-scaffold na na CVLA01000103.1 <> na Primary Assembly 1545 na contig105 unplaced-scaffold na na CVLA01000105.1 <> na Primary Assembly 1536 na contig106 unplaced-scaffold na na CVLA01000106.1 <> na Primary Assembly 1530 na contig107 unplaced-scaffold na na CVLA01000107.1 <> na Primary Assembly 1527 na contig108 unplaced-scaffold na na CVLA01000108.1 <> na Primary Assembly 1518 na contig109 unplaced-scaffold na na CVLA01000109.1 <> na Primary Assembly 1510 na contig113 unplaced-scaffold na na CVLA01000113.1 <> na Primary Assembly 1498 na contig115 unplaced-scaffold na na CVLA01000115.1 <> na Primary Assembly 1486 na contig117 unplaced-scaffold na na CVLA01000117.1 <> na Primary Assembly 1469 na contig118 unplaced-scaffold na na CVLA01000118.1 <> na Primary Assembly 1467 na contig122 unplaced-scaffold na na CVLA01000122.1 <> na Primary Assembly 1458 na contig124 unplaced-scaffold na na CVLA01000124.1 <> na Primary Assembly 1448 na contig127 unplaced-scaffold na na CVLA01000127.1 <> na Primary Assembly 1434 na contig129 unplaced-scaffold na na CVLA01000129.1 <> na Primary Assembly 1427 na contig130 unplaced-scaffold na na CVLA01000130.1 <> na Primary Assembly 1417 na contig131 unplaced-scaffold na na CVLA01000131.1 <> na Primary Assembly 1408 na contig132 unplaced-scaffold na na CVLA01000132.1 <> na Primary Assembly 1408 na contig136 unplaced-scaffold na na CVLA01000136.1 <> na Primary Assembly 1388 na contig137 unplaced-scaffold na na CVLA01000137.1 <> na Primary Assembly 1388 na contig138 unplaced-scaffold na na CVLA01000138.1 <> na Primary Assembly 1387 na contig140 unplaced-scaffold na na CVLA01000140.1 <> na Primary Assembly 1368 na contig141 unplaced-scaffold na na CVLA01000141.1 <> na Primary Assembly 1364 na contig142 unplaced-scaffold na na CVLA01000142.1 <> na Primary Assembly 1332 na contig143 unplaced-scaffold na na CVLA01000143.1 <> na Primary Assembly 1328 na contig145 unplaced-scaffold na na CVLA01000145.1 <> na Primary Assembly 1324 na contig147 unplaced-scaffold na na CVLA01000147.1 <> na Primary Assembly 1319 na contig149 unplaced-scaffold na na CVLA01000149.1 <> na Primary Assembly 1309 na contig151 unplaced-scaffold na na CVLA01000151.1 <> na Primary Assembly 1299 na contig152 unplaced-scaffold na na CVLA01000152.1 <> na Primary Assembly 1299 na contig154 unplaced-scaffold na na CVLA01000154.1 <> na Primary Assembly 1284 na contig155 unplaced-scaffold na na CVLA01000155.1 <> na Primary Assembly 1283 na contig156 unplaced-scaffold na na CVLA01000156.1 <> na Primary Assembly 1281 na contig157 unplaced-scaffold na na CVLA01000157.1 <> na Primary Assembly 1281 na contig158 unplaced-scaffold na na CVLA01000158.1 <> na Primary Assembly 1276 na contig161 unplaced-scaffold na na CVLA01000161.1 <> na Primary Assembly 1258 na contig162 unplaced-scaffold na na CVLA01000162.1 <> na Primary Assembly 1251 na contig163 unplaced-scaffold na na CVLA01000163.1 <> na Primary Assembly 1242 na contig164 unplaced-scaffold na na CVLA01000164.1 <> na Primary Assembly 1228 na contig165 unplaced-scaffold na na CVLA01000165.1 <> na Primary Assembly 1225 na contig167 unplaced-scaffold na na CVLA01000167.1 <> na Primary Assembly 1219 na contig169 unplaced-scaffold na na CVLA01000169.1 <> na Primary Assembly 1212 na contig170 unplaced-scaffold na na CVLA01000170.1 <> na Primary Assembly 1207 na contig172 unplaced-scaffold na na CVLA01000172.1 <> na Primary Assembly 1205 na contig173 unplaced-scaffold na na CVLA01000173.1 <> na Primary Assembly 1202 na contig175 unplaced-scaffold na na CVLA01000175.1 <> na Primary Assembly 1189 na contig176 unplaced-scaffold na na CVLA01000176.1 <> na Primary Assembly 1188 na contig177 unplaced-scaffold na na CVLA01000177.1 <> na Primary Assembly 1182 na contig179 unplaced-scaffold na na CVLA01000179.1 <> na Primary Assembly 1178 na contig180 unplaced-scaffold na na CVLA01000180.1 <> na Primary Assembly 1177 na contig183 unplaced-scaffold na na CVLA01000183.1 <> na Primary Assembly 1173 na contig184 unplaced-scaffold na na CVLA01000184.1 <> na Primary Assembly 1171 na contig186 unplaced-scaffold na na CVLA01000186.1 <> na Primary Assembly 1164 na contig190 unplaced-scaffold na na CVLA01000190.1 <> na Primary Assembly 1149 na contig192 unplaced-scaffold na na CVLA01000192.1 <> na Primary Assembly 1142 na contig195 unplaced-scaffold na na CVLA01000195.1 <> na Primary Assembly 1131 na contig197 unplaced-scaffold na na CVLA01000197.1 <> na Primary Assembly 1118 na contig198 unplaced-scaffold na na CVLA01000198.1 <> na Primary Assembly 1114 na contig199 unplaced-scaffold na na CVLA01000199.1 <> na Primary Assembly 1112 na contig203 unplaced-scaffold na na CVLA01000203.1 <> na Primary Assembly 1100 na contig206 unplaced-scaffold na na CVLA01000206.1 <> na Primary Assembly 1097 na contig207 unplaced-scaffold na na CVLA01000207.1 <> na Primary Assembly 1096 na contig209 unplaced-scaffold na na CVLA01000209.1 <> na Primary Assembly 1092 na contig211 unplaced-scaffold na na CVLA01000211.1 <> na Primary Assembly 1084 na contig212 unplaced-scaffold na na CVLA01000212.1 <> na Primary Assembly 1083 na contig213 unplaced-scaffold na na CVLA01000213.1 <> na Primary Assembly 1077 na contig214 unplaced-scaffold na na CVLA01000214.1 <> na Primary Assembly 1073 na contig217 unplaced-scaffold na na CVLA01000217.1 <> na Primary Assembly 1061 na contig220 unplaced-scaffold na na CVLA01000220.1 <> na Primary Assembly 1058 na contig221 unplaced-scaffold na na CVLA01000221.1 <> na Primary Assembly 1050 na contig223 unplaced-scaffold na na CVLA01000223.1 <> na Primary Assembly 1048 na contig227 unplaced-scaffold na na CVLA01000227.1 <> na Primary Assembly 1038 na contig230 unplaced-scaffold na na CVLA01000230.1 <> na Primary Assembly 1036 na contig231 unplaced-scaffold na na CVLA01000231.1 <> na Primary Assembly 1033 na contig232 unplaced-scaffold na na CVLA01000232.1 <> na Primary Assembly 1023 na contig233 unplaced-scaffold na na CVLA01000233.1 <> na Primary Assembly 1022 na contig237 unplaced-scaffold na na CVLA01000237.1 <> na Primary Assembly 1017 na contig238 unplaced-scaffold na na CVLA01000238.1 <> na Primary Assembly 1016 na contig243 unplaced-scaffold na na CVLA01000243.1 <> na Primary Assembly 1006 na contig246 unplaced-scaffold na na CVLA01000246.1 <> na Primary Assembly 1002 na contig249 unplaced-scaffold na na CVLA01000249.1 <> na Primary Assembly 987 na contig250 unplaced-scaffold na na CVLA01000250.1 <> na Primary Assembly 984 na contig252 unplaced-scaffold na na CVLA01000252.1 <> na Primary Assembly 978 na contig253 unplaced-scaffold na na CVLA01000253.1 <> na Primary Assembly 975 na contig254 unplaced-scaffold na na CVLA01000254.1 <> na Primary Assembly 974 na contig261 unplaced-scaffold na na CVLA01000261.1 <> na Primary Assembly 958 na contig262 unplaced-scaffold na na CVLA01000262.1 <> na Primary Assembly 958 na contig264 unplaced-scaffold na na CVLA01000264.1 <> na Primary Assembly 950 na contig267 unplaced-scaffold na na CVLA01000267.1 <> na Primary Assembly 941 na contig269 unplaced-scaffold na na CVLA01000269.1 <> na Primary Assembly 933 na contig271 unplaced-scaffold na na CVLA01000271.1 <> na Primary Assembly 928 na contig272 unplaced-scaffold na na CVLA01000272.1 <> na Primary Assembly 926 na contig275 unplaced-scaffold na na CVLA01000275.1 <> na Primary Assembly 914 na contig279 unplaced-scaffold na na CVLA01000279.1 <> na Primary Assembly 903 na contig282 unplaced-scaffold na na CVLA01000282.1 <> na Primary Assembly 889 na contig283 unplaced-scaffold na na CVLA01000283.1 <> na Primary Assembly 886 na contig285 unplaced-scaffold na na CVLA01000285.1 <> na Primary Assembly 880 na contig287 unplaced-scaffold na na CVLA01000287.1 <> na Primary Assembly 877 na contig291 unplaced-scaffold na na CVLA01000291.1 <> na Primary Assembly 859 na contig292 unplaced-scaffold na na CVLA01000292.1 <> na Primary Assembly 857 na contig293 unplaced-scaffold na na CVLA01000293.1 <> na Primary Assembly 853 na contig295 unplaced-scaffold na na CVLA01000295.1 <> na Primary Assembly 850 na contig296 unplaced-scaffold na na CVLA01000296.1 <> na Primary Assembly 849 na contig300 unplaced-scaffold na na CVLA01000300.1 <> na Primary Assembly 830 na contig301 unplaced-scaffold na na CVLA01000301.1 <> na Primary Assembly 820 na contig303 unplaced-scaffold na na CVLA01000303.1 <> na Primary Assembly 812 na contig304 unplaced-scaffold na na CVLA01000304.1 <> na Primary Assembly 803 na contig306 unplaced-scaffold na na CVLA01000306.1 <> na Primary Assembly 792 na contig307 unplaced-scaffold na na CVLA01000307.1 <> na Primary Assembly 786 na contig309 unplaced-scaffold na na CVLA01000309.1 <> na Primary Assembly 773 na contig310 unplaced-scaffold na na CVLA01000310.1 <> na Primary Assembly 771 na contig311 unplaced-scaffold na na CVLA01000311.1 <> na Primary Assembly 770 na contig312 unplaced-scaffold na na CVLA01000312.1 <> na Primary Assembly 766 na contig313 unplaced-scaffold na na CVLA01000313.1 <> na Primary Assembly 755 na contig314 unplaced-scaffold na na CVLA01000314.1 <> na Primary Assembly 752 na contig315 unplaced-scaffold na na CVLA01000315.1 <> na Primary Assembly 747 na contig316 unplaced-scaffold na na CVLA01000316.1 <> na Primary Assembly 742 na contig318 unplaced-scaffold na na CVLA01000318.1 <> na Primary Assembly 704 na contig319 unplaced-scaffold na na CVLA01000319.1 <> na Primary Assembly 698 na contig320 unplaced-scaffold na na CVLA01000320.1 <> na Primary Assembly 698 na contig321 unplaced-scaffold na na CVLA01000321.1 <> na Primary Assembly 693 na contig322 unplaced-scaffold na na CVLA01000322.1 <> na Primary Assembly 682 na contig324 unplaced-scaffold na na CVLA01000324.1 <> na Primary Assembly 667 na contig325 unplaced-scaffold na na CVLA01000325.1 <> na Primary Assembly 663 na contig326 unplaced-scaffold na na CVLA01000326.1 <> na Primary Assembly 657 na contig327 unplaced-scaffold na na CVLA01000327.1 <> na Primary Assembly 648 na contig328 unplaced-scaffold na na CVLA01000328.1 <> na Primary Assembly 647 na contig329 unplaced-scaffold na na CVLA01000329.1 <> na Primary Assembly 643 na contig330 unplaced-scaffold na na CVLA01000330.1 <> na Primary Assembly 640 na contig331 unplaced-scaffold na na CVLA01000331.1 <> na Primary Assembly 634 na contig332 unplaced-scaffold na na CVLA01000332.1 <> na Primary Assembly 634 na contig334 unplaced-scaffold na na CVLA01000334.1 <> na Primary Assembly 612 na contig335 unplaced-scaffold na na CVLA01000335.1 <> na Primary Assembly 606 na contig336 unplaced-scaffold na na CVLA01000336.1 <> na Primary Assembly 604 na contig337 unplaced-scaffold na na CVLA01000337.1 <> na Primary Assembly 579 na contig338 unplaced-scaffold na na CVLA01000338.1 <> na Primary Assembly 571 na contig339 unplaced-scaffold na na CVLA01000339.1 <> na Primary Assembly 563 na contig340 unplaced-scaffold na na CVLA01000340.1 <> na Primary Assembly 562 na contig341 unplaced-scaffold na na CVLA01000341.1 <> na Primary Assembly 557 na contig342 unplaced-scaffold na na CVLA01000342.1 <> na Primary Assembly 557 na contig343 unplaced-scaffold na na CVLA01000343.1 <> na Primary Assembly 550 na contig344 unplaced-scaffold na na CVLA01000344.1 <> na Primary Assembly 547 na contig345 unplaced-scaffold na na CVLA01000345.1 <> na Primary Assembly 543 na contig346 unplaced-scaffold na na CVLA01000346.1 <> na Primary Assembly 539 na contig347 unplaced-scaffold na na CVLA01000347.1 <> na Primary Assembly 536 na contig348 unplaced-scaffold na na CVLA01000348.1 <> na Primary Assembly 528 na contig349 unplaced-scaffold na na CVLA01000349.1 <> na Primary Assembly 526 na contig350 unplaced-scaffold na na CVLA01000350.1 <> na Primary Assembly 523 na contig351 unplaced-scaffold na na CVLA01000351.1 <> na Primary Assembly 511 na contig352 unplaced-scaffold na na CVLA01000352.1 <> na Primary Assembly 491 na contig353 unplaced-scaffold na na CVLA01000353.1 <> na Primary Assembly 486 na contig354 unplaced-scaffold na na CVLA01000354.1 <> na Primary Assembly 482 na contig355 unplaced-scaffold na na CVLA01000355.1 <> na Primary Assembly 473 na contig356 unplaced-scaffold na na CVLA01000356.1 <> na Primary Assembly 470 na