# Assembly name: mRouMad1.hap2 # Organism name: Rousettus madagascariensis (Madagascan rousette) # Isolate: mRouMad1 # Sex: male # Taxid: 77223 # BioSample: SAMN61222921 # BioProject: PRJNA1484195 # Submitter: Vertebrate Genomes Project # Date: 2026-08-04 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JCASON01 # Assembly method: Hifiasm + Hi-C phasing v. 0.25.0 + galaxy0; yahs v. 1.2a.2 + galaxy2 # Expected final version: No # Genome coverage: 72.36x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_059802175.1 # Linked assembly: GCA_059802055.1 (haplotype 1) # ## Assembly-Unit names: ## Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM187145.1 <> na Primary Assembly 186542460 na SUPER_2 assembled-molecule 2 Chromosome CM187146.1 <> na Primary Assembly 177771272 na SUPER_3 assembled-molecule 3 Chromosome CM187147.1 <> na Primary Assembly 177201297 na SUPER_4 assembled-molecule 4 Chromosome CM187148.1 <> na Primary Assembly 163182513 na SUPER_5 assembled-molecule 5 Chromosome CM187149.1 <> na Primary Assembly 124402800 na SUPER_6 assembled-molecule 6 Chromosome CM187150.1 <> na Primary Assembly 117109920 na SUPER_7 assembled-molecule 7 Chromosome CM187151.1 <> na Primary Assembly 114924640 na SUPER_8 assembled-molecule 8 Chromosome CM187152.1 <> na Primary Assembly 114157918 na SUPER_9 assembled-molecule 9 Chromosome CM187153.1 <> na Primary Assembly 101362136 na SUPER_10 assembled-molecule 10 Chromosome CM187154.1 <> na Primary Assembly 100496674 na SUPER_11 assembled-molecule 11 Chromosome CM187155.1 <> na Primary Assembly 96555334 na SUPER_12 assembled-molecule 12 Chromosome CM187156.1 <> na Primary Assembly 82667033 na SUPER_13 assembled-molecule 13 Chromosome CM187157.1 <> na Primary Assembly 62766457 na SUPER_14 assembled-molecule 14 Chromosome CM187158.1 <> na Primary Assembly 62303237 na SUPER_15 assembled-molecule 15 Chromosome CM187159.1 <> na Primary Assembly 62475757 na SUPER_16 assembled-molecule 16 Chromosome CM187160.1 <> na Primary Assembly 50259588 na SUPER_17 assembled-molecule 17 Chromosome CM187161.1 <> na Primary Assembly 24189533 na SUPER_8_unloc_5 unlocalized-scaffold 8 Chromosome JCASON010000018.1 <> na Primary Assembly 1672824 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JCASON010000024.1 <> na Primary Assembly 554335 na SUPER_8_unloc_2 unlocalized-scaffold 8 Chromosome JCASON010000027.1 <> na Primary Assembly 484938 na SUPER_8_unloc_3 unlocalized-scaffold 8 Chromosome JCASON010000029.1 <> na Primary Assembly 351812 na SUPER_8_unloc_4 unlocalized-scaffold 8 Chromosome JCASON010000030.1 <> na Primary Assembly 343223 na Scaffold_38 unplaced-scaffold na na JCASON010000019.1 <> na Primary Assembly 924213 na Scaffold_39 unplaced-scaffold na na JCASON010000020.1 <> na Primary Assembly 720673 na Scaffold_41 unplaced-scaffold na na JCASON010000021.1 <> na Primary Assembly 665671 na Scaffold_42 unplaced-scaffold na na JCASON010000022.1 <> na Primary Assembly 659904 na Scaffold_43 unplaced-scaffold na na JCASON010000023.1 <> na Primary Assembly 657203 na Scaffold_46 unplaced-scaffold na na JCASON010000025.1 <> na Primary Assembly 492062 na Scaffold_47 unplaced-scaffold na na JCASON010000026.1 <> na Primary Assembly 490866 na Scaffold_48 unplaced-scaffold na na JCASON010000028.1 <> na Primary Assembly 475344 na Scaffold_50 unplaced-scaffold na na JCASON010000031.1 <> na Primary Assembly 337809 na Scaffold_51 unplaced-scaffold na na JCASON010000032.1 <> na Primary Assembly 292544 na Scaffold_54 unplaced-scaffold na na JCASON010000033.1 <> na Primary Assembly 270178 na Scaffold_56 unplaced-scaffold na na JCASON010000034.1 <> na Primary Assembly 262886 na Scaffold_58 unplaced-scaffold na na JCASON010000035.1 <> na Primary Assembly 234384 na Scaffold_61 unplaced-scaffold na na JCASON010000036.1 <> na Primary Assembly 202243 na Scaffold_62 unplaced-scaffold na na JCASON010000037.1 <> na Primary Assembly 191655 na Scaffold_64 unplaced-scaffold na na JCASON010000038.1 <> na Primary Assembly 168266 na Scaffold_65 unplaced-scaffold na na JCASON010000039.1 <> na Primary Assembly 166901 na Scaffold_69 unplaced-scaffold na na JCASON010000040.1 <> na Primary Assembly 149371 na Scaffold_72 unplaced-scaffold na na JCASON010000041.1 <> na Primary Assembly 140771 na Scaffold_74 unplaced-scaffold na na JCASON010000042.1 <> na Primary Assembly 140388 na Scaffold_75 unplaced-scaffold na na JCASON010000043.1 <> na Primary Assembly 136022 na Scaffold_76 unplaced-scaffold na na JCASON010000044.1 <> na Primary Assembly 135542 na Scaffold_77 unplaced-scaffold na na JCASON010000045.1 <> na Primary Assembly 135183 na Scaffold_79 unplaced-scaffold na na JCASON010000046.1 <> na Primary Assembly 130819 na Scaffold_80 unplaced-scaffold na na JCASON010000047.1 <> na Primary Assembly 127331 na Scaffold_82 unplaced-scaffold na na JCASON010000048.1 <> na Primary Assembly 122868 na Scaffold_83 unplaced-scaffold na na JCASON010000049.1 <> na Primary Assembly 118301 na Scaffold_84 unplaced-scaffold na na JCASON010000050.1 <> na Primary Assembly 116136 na Scaffold_86 unplaced-scaffold na na JCASON010000051.1 <> na Primary Assembly 109439 na Scaffold_219 unplaced-scaffold na na JCASON010000052.1 <> na Primary Assembly 98163 na Scaffold_87 unplaced-scaffold na na JCASON010000053.1 <> na Primary Assembly 95710 na Scaffold_89 unplaced-scaffold na na JCASON010000054.1 <> na Primary Assembly 91762 na Scaffold_91 unplaced-scaffold na na JCASON010000055.1 <> na Primary Assembly 87848 na Scaffold_92 unplaced-scaffold na na JCASON010000056.1 <> na Primary Assembly 85393 na Scaffold_93 unplaced-scaffold na na JCASON010000057.1 <> na Primary Assembly 84751 na Scaffold_205 unplaced-scaffold na na JCASON010000058.1 <> na Primary Assembly 82978 na Scaffold_96 unplaced-scaffold na na JCASON010000059.1 <> na Primary Assembly 63484 na Scaffold_98 unplaced-scaffold na na JCASON010000060.1 <> na Primary Assembly 58588 na Scaffold_210 unplaced-scaffold na na JCASON010000061.1 <> na Primary Assembly 51945 na Scaffold_102 unplaced-scaffold na na JCASON010000062.1 <> na Primary Assembly 51521 na Scaffold_208 unplaced-scaffold na na JCASON010000063.1 <> na Primary Assembly 44150 na Scaffold_207 unplaced-scaffold na na JCASON010000064.1 <> na Primary Assembly 33572 na Scaffold_206 unplaced-scaffold na na JCASON010000065.1 <> na Primary Assembly 31761 na