# Assembly name: mRouMad1.hap1 # Organism name: Rousettus madagascariensis (Madagascan rousette) # Isolate: mRouMad1 # Sex: male # Taxid: 77223 # BioSample: SAMN61222921 # BioProject: PRJNA1484196 # Submitter: Vertebrate Genomes Project # Date: 2026-08-04 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JCASOM01 # Assembly method: Hifiasm + Hi-C phasing v. 0.25.0 + galaxy0; yahs v. 1.2a.2 + galaxy2 # Expected final version: No # Genome coverage: 72.36x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_059802055.1 # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM187087.1 <> na Primary Assembly 187265408 na SUPER_2 assembled-molecule 2 Chromosome CM187088.1 <> na Primary Assembly 177937538 na SUPER_3 assembled-molecule 3 Chromosome CM187089.1 <> na Primary Assembly 176877027 na SUPER_4 assembled-molecule 4 Chromosome CM187090.1 <> na Primary Assembly 162775565 na SUPER_5 assembled-molecule 5 Chromosome CM187091.1 <> na Primary Assembly 123370819 na SUPER_6 assembled-molecule 6 Chromosome CM187092.1 <> na Primary Assembly 116578547 na SUPER_7 assembled-molecule 7 Chromosome CM187093.1 <> na Primary Assembly 115665746 na SUPER_8 assembled-molecule 8 Chromosome CM187094.1 <> na Primary Assembly 115213116 na SUPER_9 assembled-molecule 9 Chromosome CM187095.1 <> na Primary Assembly 101056370 na SUPER_10 assembled-molecule 10 Chromosome CM187096.1 <> na Primary Assembly 97805667 na SUPER_11 assembled-molecule 11 Chromosome CM187097.1 <> na Primary Assembly 96580420 na SUPER_12 assembled-molecule 12 Chromosome CM187098.1 <> na Primary Assembly 82765339 na SUPER_13 assembled-molecule 13 Chromosome CM187099.1 <> na Primary Assembly 62849780 na SUPER_14 assembled-molecule 14 Chromosome CM187100.1 <> na Primary Assembly 62211915 na SUPER_15 assembled-molecule 15 Chromosome CM187101.1 <> na Primary Assembly 62126894 na SUPER_16 assembled-molecule 16 Chromosome CM187102.1 <> na Primary Assembly 50491098 na SUPER_17 assembled-molecule 17 Chromosome CM187103.1 <> na Primary Assembly 24434912 na SUPER_X assembled-molecule X Chromosome CM187104.1 <> na Primary Assembly 117808887 na SUPER_Y assembled-molecule Y Chromosome CM187105.1 <> na Primary Assembly 15946135 na SUPER_8_unloc_2 unlocalized-scaffold 8 Chromosome JCASOM010000022.1 <> na Primary Assembly 1151021 na SUPER_8_unloc_4 unlocalized-scaffold 8 Chromosome JCASOM010000023.1 <> na Primary Assembly 981594 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JCASOM010000024.1 <> na Primary Assembly 970462 na SUPER_8_unloc_5 unlocalized-scaffold 8 Chromosome JCASOM010000025.1 <> na Primary Assembly 782276 na SUPER_8_unloc_6 unlocalized-scaffold 8 Chromosome JCASOM010000028.1 <> na Primary Assembly 596696 na SUPER_8_unloc_3 unlocalized-scaffold 8 Chromosome JCASOM010000031.1 <> na Primary Assembly 477631 na SUPER_17_unloc_1 unlocalized-scaffold 17 Chromosome JCASOM010000029.1 <> na Primary Assembly 572188 na Scaffold_37 unplaced-scaffold na na JCASOM010000021.1 <> na Primary Assembly 1159238 na Scaffold_40 unplaced-scaffold na na JCASOM010000026.1 <> na Primary Assembly 670568 na Scaffold_44 unplaced-scaffold na na JCASOM010000027.1 <> na Primary Assembly 604141 na Scaffold_45 unplaced-scaffold na na JCASOM010000030.1 <> na Primary Assembly 547307 na Scaffold_49 unplaced-scaffold na na JCASOM010000032.1 <> na Primary Assembly 386977 na Scaffold_52 unplaced-scaffold na na JCASOM010000033.1 <> na Primary Assembly 287586 na Scaffold_53 unplaced-scaffold na na JCASOM010000034.1 <> na Primary Assembly 279301 na Scaffold_55 unplaced-scaffold na na JCASOM010000035.1 <> na Primary Assembly 263731 na Scaffold_57 unplaced-scaffold na na JCASOM010000036.1 <> na Primary Assembly 248619 na Scaffold_59 unplaced-scaffold na na JCASOM010000037.1 <> na Primary Assembly 210836 na Scaffold_60 unplaced-scaffold na na JCASOM010000038.1 <> na Primary Assembly 206016 na Scaffold_63 unplaced-scaffold na na JCASOM010000039.1 <> na Primary Assembly 179628 na Scaffold_66 unplaced-scaffold na na JCASOM010000040.1 <> na Primary Assembly 161697 na Scaffold_67 unplaced-scaffold na na JCASOM010000041.1 <> na Primary Assembly 157683 na Scaffold_68 unplaced-scaffold na na JCASOM010000042.1 <> na Primary Assembly 157532 na Scaffold_70 unplaced-scaffold na na JCASOM010000043.1 <> na Primary Assembly 147049 na Scaffold_71 unplaced-scaffold na na JCASOM010000044.1 <> na Primary Assembly 146657 na Scaffold_73 unplaced-scaffold na na JCASOM010000045.1 <> na Primary Assembly 140599 na Scaffold_78 unplaced-scaffold na na JCASOM010000046.1 <> na Primary Assembly 131306 na Scaffold_81 unplaced-scaffold na na JCASOM010000047.1 <> na Primary Assembly 124927 na Scaffold_85 unplaced-scaffold na na JCASOM010000048.1 <> na Primary Assembly 111633 na Scaffold_88 unplaced-scaffold na na JCASOM010000049.1 <> na Primary Assembly 91791 na Scaffold_90 unplaced-scaffold na na JCASOM010000050.1 <> na Primary Assembly 89987 na Scaffold_119 unplaced-scaffold na na JCASOM010000051.1 <> na Primary Assembly 87883 na Scaffold_94 unplaced-scaffold na na JCASOM010000052.1 <> na Primary Assembly 81173 na Scaffold_95 unplaced-scaffold na na JCASOM010000053.1 <> na Primary Assembly 73020 na Scaffold_116 unplaced-scaffold na na JCASOM010000054.1 <> na Primary Assembly 71716 na Scaffold_115 unplaced-scaffold na na JCASOM010000055.1 <> na Primary Assembly 61484 na Scaffold_97 unplaced-scaffold na na JCASOM010000056.1 <> na Primary Assembly 60986 na Scaffold_113 unplaced-scaffold na na JCASOM010000057.1 <> na Primary Assembly 59598 na Scaffold_112 unplaced-scaffold na na JCASOM010000058.1 <> na Primary Assembly 57417 na Scaffold_99 unplaced-scaffold na na JCASOM010000059.1 <> na Primary Assembly 57367 na Scaffold_110 unplaced-scaffold na na JCASOM010000060.1 <> na Primary Assembly 55467 na Scaffold_100 unplaced-scaffold na na JCASOM010000061.1 <> na Primary Assembly 52581 na Scaffold_147 unplaced-scaffold na na JCASOM010000062.1 <> na Primary Assembly 52525 na Scaffold_101 unplaced-scaffold na na JCASOM010000063.1 <> na Primary Assembly 52389 na Scaffold_145 unplaced-scaffold na na JCASOM010000064.1 <> na Primary Assembly 49304 na Scaffold_144 unplaced-scaffold na na JCASOM010000065.1 <> na Primary Assembly 48538 na Scaffold_103 unplaced-scaffold na na JCASOM010000066.1 <> na Primary Assembly 45664 na Scaffold_142 unplaced-scaffold na na JCASOM010000067.1 <> na Primary Assembly 44952 na Scaffold_104 unplaced-scaffold na na JCASOM010000068.1 <> na Primary Assembly 44472 na Scaffold_140 unplaced-scaffold na na JCASOM010000069.1 <> na Primary Assembly 44105 na Scaffold_105 unplaced-scaffold na na JCASOM010000070.1 <> na Primary Assembly 40539 na Scaffold_130 unplaced-scaffold na na JCASOM010000071.1 <> na Primary Assembly 39970 na Scaffold_137 unplaced-scaffold na na JCASOM010000072.1 <> na Primary Assembly 38316 na Scaffold_106 unplaced-scaffold na na JCASOM010000073.1 <> na Primary Assembly 34769 na Scaffold_135 unplaced-scaffold na na JCASOM010000074.1 <> na Primary Assembly 34120 na Scaffold_107 unplaced-scaffold na na JCASOM010000075.1 <> na Primary Assembly 33405 na Scaffold_133 unplaced-scaffold na na JCASOM010000076.1 <> na Primary Assembly 27044 na Scaffold_132 unplaced-scaffold na na JCASOM010000077.1 <> na Primary Assembly 25424 na Scaffold_108 unplaced-scaffold na na JCASOM010000078.1 <> na Primary Assembly 25077 na ptg000012l_rotated assembled-molecule MT Mitochondrion CM187162.1 <> na non-nuclear 16655 na