# Assembly name: fChaZeb2.hap2 # Organism name: Characidium zebra (ray-finned fishes) # Isolate: fChaZeb2 # Sex: female # Taxid: 1053565 # BioSample: SAMN61463014 # BioProject: PRJNA1491496 # Submitter: Vertebrate Genomes Project # Date: 2026-07-17 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JCANKO01 # Assembly method: Hifiasm + Hi-C phasing v. 0.25.0 + galaxy0; yahs v. 1.2a.2 + galaxy3 # Expected final version: No # Genome coverage: 57.09x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_059491955.1 # ## Assembly-Unit names: ## Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM183271.1 <> na Primary Assembly 85860644 na SUPER_2 assembled-molecule 2 Chromosome CM183272.1 <> na Primary Assembly 74796885 na SUPER_3 assembled-molecule 3 Chromosome CM183273.1 <> na Primary Assembly 75899821 na SUPER_4 assembled-molecule 4 Chromosome CM183274.1 <> na Primary Assembly 55023060 na SUPER_5 assembled-molecule 5 Chromosome CM183275.1 <> na Primary Assembly 52046726 na SUPER_6 assembled-molecule 6 Chromosome CM183276.1 <> na Primary Assembly 50880425 na SUPER_7 assembled-molecule 7 Chromosome CM183277.1 <> na Primary Assembly 50648456 na SUPER_8 assembled-molecule 8 Chromosome CM183278.1 <> na Primary Assembly 49514404 na SUPER_9 assembled-molecule 9 Chromosome CM183279.1 <> na Primary Assembly 39920630 na SUPER_10 assembled-molecule 10 Chromosome CM183280.1 <> na Primary Assembly 46421619 na SUPER_11 assembled-molecule 11 Chromosome CM183281.1 <> na Primary Assembly 49403245 na SUPER_12 assembled-molecule 12 Chromosome CM183282.1 <> na Primary Assembly 47274264 na SUPER_13 assembled-molecule 13 Chromosome CM183283.1 <> na Primary Assembly 42373225 na SUPER_14 assembled-molecule 14 Chromosome CM183284.1 <> na Primary Assembly 43421500 na SUPER_15 assembled-molecule 15 Chromosome CM183285.1 <> na Primary Assembly 43553300 na SUPER_16 assembled-molecule 16 Chromosome CM183286.1 <> na Primary Assembly 40993400 na SUPER_17 assembled-molecule 17 Chromosome CM183287.1 <> na Primary Assembly 42222615 na SUPER_18 assembled-molecule 18 Chromosome CM183288.1 <> na Primary Assembly 41683552 na SUPER_19 assembled-molecule 19 Chromosome CM183289.1 <> na Primary Assembly 39597509 na SUPER_20 assembled-molecule 20 Chromosome CM183290.1 <> na Primary Assembly 39605564 na SUPER_21 assembled-molecule 21 Chromosome CM183291.1 <> na Primary Assembly 33906937 na SUPER_22 assembled-molecule 22 Chromosome CM183292.1 <> na Primary Assembly 36446783 na SUPER_23 assembled-molecule 23 Chromosome CM183293.1 <> na Primary Assembly 35660747 na SUPER_24 assembled-molecule 24 Chromosome CM183294.1 <> na Primary Assembly 34936789 na SUPER_25 assembled-molecule 25 Chromosome CM183295.1 <> na Primary Assembly 35802712 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JCANKO010000034.1 <> na Primary Assembly 263843 na SUPER_21_unloc_1 unlocalized-scaffold 21 Chromosome JCANKO010000064.1 <> na Primary Assembly 94906 na Scaffold_72 unplaced-scaffold na na JCANKO010000026.1 <> na Primary Assembly 631560 na Scaffold_73 unplaced-scaffold na na JCANKO010000027.1 <> na Primary Assembly 601178 na Scaffold_55 unplaced-scaffold na na JCANKO010000028.1 <> na Primary Assembly 591431 na Scaffold_78 unplaced-scaffold na na JCANKO010000029.1 <> na Primary Assembly 482986 na Scaffold_54 unplaced-scaffold na na JCANKO010000030.1 <> na Primary Assembly 319176 na Scaffold_60 unplaced-scaffold na na JCANKO010000031.1 <> na Primary Assembly 316336 na Scaffold_68 unplaced-scaffold na na JCANKO010000032.1 <> na Primary Assembly 289675 na Scaffold_59 unplaced-scaffold na na JCANKO010000033.1 <> na Primary Assembly 286242 na Scaffold_76 unplaced-scaffold na na JCANKO010000035.1 <> na Primary Assembly 263633 na Scaffold_58 unplaced-scaffold na na JCANKO010000036.1 <> na Primary Assembly 241570 na Scaffold_75 unplaced-scaffold na na JCANKO010000037.1 <> na Primary Assembly 237657 na Scaffold_63 unplaced-scaffold na na JCANKO010000038.1 <> na Primary Assembly 204582 na Scaffold_65 unplaced-scaffold na na JCANKO010000039.1 <> na Primary Assembly 197852 na Scaffold_64 unplaced-scaffold na na JCANKO010000040.1 <> na Primary Assembly 191714 na Scaffold_86 unplaced-scaffold na na JCANKO010000041.1 <> na Primary Assembly 169640 na Scaffold_92 unplaced-scaffold na na JCANKO010000042.1 <> na Primary Assembly 169271 na Scaffold_93 unplaced-scaffold na na JCANKO010000043.1 <> na Primary Assembly 165270 na Scaffold_100 unplaced-scaffold na na JCANKO010000044.1 <> na Primary Assembly 138138 na Scaffold_102 unplaced-scaffold na na JCANKO010000045.1 <> na Primary Assembly 136653 na Scaffold_104 unplaced-scaffold na na JCANKO010000046.1 <> na Primary Assembly 135013 na Scaffold_109 unplaced-scaffold na na JCANKO010000047.1 <> na Primary Assembly 124288 na Scaffold_110 unplaced-scaffold na na JCANKO010000048.1 <> na Primary Assembly 122394 na Scaffold_113 unplaced-scaffold na na JCANKO010000049.1 <> na Primary Assembly 119428 na Scaffold_115 unplaced-scaffold na na JCANKO010000050.1 <> na Primary Assembly 118667 na Scaffold_117 unplaced-scaffold na na JCANKO010000051.1 <> na Primary Assembly 116226 na Scaffold_119 unplaced-scaffold na na JCANKO010000052.1 <> na Primary Assembly 113316 na Scaffold_121 unplaced-scaffold na na JCANKO010000053.1 <> na Primary Assembly 111722 na Scaffold_123 unplaced-scaffold na na JCANKO010000054.1 <> na Primary Assembly 110207 na Scaffold_127 unplaced-scaffold na na JCANKO010000055.1 <> na Primary Assembly 106117 na Scaffold_129 unplaced-scaffold na na JCANKO010000056.1 <> na Primary Assembly 101972 na Scaffold_130 unplaced-scaffold na na JCANKO010000057.1 <> na Primary Assembly 101170 na Scaffold_132 unplaced-scaffold na na JCANKO010000058.1 <> na Primary Assembly 100603 na Scaffold_134 unplaced-scaffold na na JCANKO010000059.1 <> na Primary Assembly 98697 na Scaffold_135 unplaced-scaffold na na JCANKO010000060.1 <> na Primary Assembly 98539 na Scaffold_136 unplaced-scaffold na na JCANKO010000061.1 <> na Primary Assembly 97459 na Scaffold_139 unplaced-scaffold na na JCANKO010000062.1 <> na Primary Assembly 95485 na Scaffold_140 unplaced-scaffold na na JCANKO010000063.1 <> na Primary Assembly 95365 na Scaffold_142 unplaced-scaffold na na JCANKO010000065.1 <> na Primary Assembly 93678 na Scaffold_144 unplaced-scaffold na na JCANKO010000066.1 <> na Primary Assembly 92651 na Scaffold_145 unplaced-scaffold na na JCANKO010000067.1 <> na Primary Assembly 91587 na Scaffold_148 unplaced-scaffold na na JCANKO010000068.1 <> na Primary Assembly 89164 na Scaffold_156 unplaced-scaffold na na JCANKO010000069.1 <> na Primary Assembly 84391 na Scaffold_159 unplaced-scaffold na na JCANKO010000070.1 <> na Primary Assembly 80819 na Scaffold_161 unplaced-scaffold na na JCANKO010000071.1 <> na Primary Assembly 79868 na Scaffold_163 unplaced-scaffold na na JCANKO010000072.1 <> na Primary Assembly 79275 na Scaffold_164 unplaced-scaffold na na JCANKO010000073.1 <> na Primary Assembly 78753 na Scaffold_167 unplaced-scaffold na na JCANKO010000074.1 <> na Primary Assembly 77180 na Scaffold_168 unplaced-scaffold na na JCANKO010000075.1 <> na Primary Assembly 76144 na Scaffold_170 unplaced-scaffold na na JCANKO010000076.1 <> na Primary Assembly 74478 na Scaffold_172 unplaced-scaffold na na JCANKO010000077.1 <> na Primary Assembly 73359 na Scaffold_176 unplaced-scaffold na na JCANKO010000078.1 <> na Primary Assembly 71961 na Scaffold_177 unplaced-scaffold na na JCANKO010000079.1 <> na Primary Assembly 71308 na Scaffold_181 unplaced-scaffold na na JCANKO010000080.1 <> na Primary Assembly 68442 na Scaffold_184 unplaced-scaffold na na JCANKO010000081.1 <> na Primary Assembly 67655 na Scaffold_186 unplaced-scaffold na na JCANKO010000082.1 <> na Primary Assembly 66862 na Scaffold_673 unplaced-scaffold na na JCANKO010000083.1 <> na Primary Assembly 65924 na Scaffold_189 unplaced-scaffold na na JCANKO010000084.1 <> na Primary Assembly 65457 na Scaffold_190 unplaced-scaffold na na JCANKO010000085.1 <> na Primary Assembly 65348 na Scaffold_191 unplaced-scaffold na na JCANKO010000086.1 <> na Primary Assembly 65128 na Scaffold_194 unplaced-scaffold na na JCANKO010000087.1 <> na Primary Assembly 64767 na Scaffold_195 unplaced-scaffold na na JCANKO010000088.1 <> na Primary Assembly 64460 na Scaffold_679 unplaced-scaffold na na JCANKO010000089.1 <> na Primary Assembly 63878 na Scaffold_196 unplaced-scaffold na na JCANKO010000090.1 <> na Primary Assembly 63840 na Scaffold_200 unplaced-scaffold na na JCANKO010000091.1 <> na Primary Assembly 62107 na Scaffold_682 unplaced-scaffold na na JCANKO010000092.1 <> na Primary Assembly 62065 na Scaffold_201 unplaced-scaffold na na JCANKO010000093.1 <> na Primary Assembly 61105 na Scaffold_203 unplaced-scaffold na na JCANKO010000094.1 <> na Primary Assembly 60218 na Scaffold_204 unplaced-scaffold na na JCANKO010000095.1 <> na Primary Assembly 60077 na Scaffold_686 unplaced-scaffold na na JCANKO010000096.1 <> na Primary Assembly 59619 na Scaffold_206 unplaced-scaffold na na JCANKO010000097.1 <> na Primary Assembly 59296 na Scaffold_209 unplaced-scaffold na na JCANKO010000098.1 <> na Primary Assembly 58954 na Scaffold_689 unplaced-scaffold na na JCANKO010000099.1 <> na Primary Assembly 56456 na Scaffold_217 unplaced-scaffold na na JCANKO010000100.1 <> na Primary Assembly 55819 na Scaffold_220 unplaced-scaffold na na JCANKO010000101.1 <> na Primary Assembly 54944 na Scaffold_221 unplaced-scaffold na na JCANKO010000102.1 <> na Primary Assembly 54633 na Scaffold_222 unplaced-scaffold na na JCANKO010000103.1 <> na Primary Assembly 54002 na Scaffold_645 unplaced-scaffold na na JCANKO010000104.1 <> na Primary Assembly 52178 na Scaffold_225 unplaced-scaffold na na JCANKO010000105.1 <> na Primary Assembly 52020 na Scaffold_226 unplaced-scaffold na na JCANKO010000106.1 <> na Primary Assembly 51984 na Scaffold_648 unplaced-scaffold na na JCANKO010000107.1 <> na Primary Assembly 51546 na Scaffold_228 unplaced-scaffold na na JCANKO010000108.1 <> na Primary Assembly 51452 na Scaffold_650 unplaced-scaffold na na JCANKO010000109.1 <> na Primary Assembly 51298 na Scaffold_230 unplaced-scaffold na na JCANKO010000110.1 <> na Primary Assembly 51289 na Scaffold_231 unplaced-scaffold na na JCANKO010000111.1 <> na Primary Assembly 51223 na Scaffold_233 unplaced-scaffold na na JCANKO010000112.1 <> na Primary Assembly 49851 na Scaffold_236 unplaced-scaffold na na JCANKO010000113.1 <> na Primary Assembly 49158 na Scaffold_239 unplaced-scaffold na na JCANKO010000114.1 <> na Primary Assembly 48383 na Scaffold_656 unplaced-scaffold na na JCANKO010000115.1 <> na Primary Assembly 47990 na Scaffold_241 unplaced-scaffold na na JCANKO010000116.1 <> na Primary Assembly 47588 na Scaffold_243 unplaced-scaffold na na JCANKO010000117.1 <> na Primary Assembly 47327 na Scaffold_246 unplaced-scaffold na na JCANKO010000118.1 <> na Primary Assembly 45868 na Scaffold_248 unplaced-scaffold na na JCANKO010000119.1 <> na Primary Assembly 44664 na Scaffold_661 unplaced-scaffold na na JCANKO010000120.1 <> na Primary Assembly 44459 na Scaffold_250 unplaced-scaffold na na JCANKO010000121.1 <> na Primary Assembly 43990 na Scaffold_663 unplaced-scaffold na na JCANKO010000122.1 <> na Primary Assembly 43524 na Scaffold_664 unplaced-scaffold na na JCANKO010000123.1 <> na Primary Assembly 43435 na Scaffold_256 unplaced-scaffold na na JCANKO010000124.1 <> na Primary Assembly 43111 na Scaffold_678 unplaced-scaffold na na JCANKO010000125.1 <> na Primary Assembly 42912 na Scaffold_257 unplaced-scaffold na na JCANKO010000126.1 <> na Primary Assembly 42849 na Scaffold_717 unplaced-scaffold na na JCANKO010000127.1 <> na Primary Assembly 42305 na Scaffold_263 unplaced-scaffold na na JCANKO010000128.1 <> na Primary Assembly 41634 na Scaffold_267 unplaced-scaffold na na JCANKO010000129.1 <> na Primary Assembly 40494 na Scaffold_720 unplaced-scaffold na na JCANKO010000130.1 <> na Primary Assembly 40309 na Scaffold_271 unplaced-scaffold na na JCANKO010000131.1 <> na Primary Assembly 39709 na Scaffold_722 unplaced-scaffold na na JCANKO010000132.1 <> na Primary Assembly 39625 na Scaffold_723 unplaced-scaffold na na JCANKO010000133.1 <> na Primary Assembly 39395 na Scaffold_277 unplaced-scaffold na na JCANKO010000134.1 <> na Primary Assembly 39226 na Scaffold_725 unplaced-scaffold na na JCANKO010000135.1 <> na Primary Assembly 39209 na Scaffold_279 unplaced-scaffold na na JCANKO010000136.1 <> na Primary Assembly 39010 na Scaffold_715 unplaced-scaffold na na JCANKO010000137.1 <> na Primary Assembly 38565 na Scaffold_728 unplaced-scaffold na na JCANKO010000138.1 <> na Primary Assembly 38042 na Scaffold_283 unplaced-scaffold na na JCANKO010000139.1 <> na Primary Assembly 37790 na Scaffold_285 unplaced-scaffold na na JCANKO010000140.1 <> na Primary Assembly 37583 na Scaffold_288 unplaced-scaffold na na JCANKO010000141.1 <> na Primary Assembly 36791 na Scaffold_290 unplaced-scaffold na na JCANKO010000142.1 <> na Primary Assembly 36218 na Scaffold_291 unplaced-scaffold na na JCANKO010000143.1 <> na Primary Assembly 35898 na Scaffold_734 unplaced-scaffold na na JCANKO010000144.1 <> na Primary Assembly 35888 na Scaffold_292 unplaced-scaffold na na JCANKO010000145.1 <> na Primary Assembly 35844 na Scaffold_295 unplaced-scaffold na na JCANKO010000146.1 <> na Primary Assembly 35186 na Scaffold_737 unplaced-scaffold na na JCANKO010000147.1 <> na Primary Assembly 35047 na Scaffold_738 unplaced-scaffold na na JCANKO010000148.1 <> na Primary Assembly 35018 na Scaffold_297 unplaced-scaffold na na JCANKO010000149.1 <> na Primary Assembly 34986 na Scaffold_691 unplaced-scaffold na na JCANKO010000150.1 <> na Primary Assembly 34309 na Scaffold_300 unplaced-scaffold na na JCANKO010000151.1 <> na Primary Assembly 34129 na Scaffold_301 unplaced-scaffold na na JCANKO010000152.1 <> na Primary Assembly 34061 na Scaffold_302 unplaced-scaffold na na JCANKO010000153.1 <> na Primary Assembly 33677 na Scaffold_695 unplaced-scaffold na na JCANKO010000154.1 <> na Primary Assembly 32993 na Scaffold_696 unplaced-scaffold na na JCANKO010000155.1 <> na Primary Assembly 32641 na Scaffold_697 unplaced-scaffold na na JCANKO010000156.1 <> na Primary Assembly 32429 na Scaffold_313 unplaced-scaffold na na JCANKO010000157.1 <> na Primary Assembly 31390 na Scaffold_699 unplaced-scaffold na na JCANKO010000158.1 <> na Primary Assembly 30961 na Scaffold_700 unplaced-scaffold na na JCANKO010000159.1 <> na Primary Assembly 30884 na Scaffold_701 unplaced-scaffold na na JCANKO010000160.1 <> na Primary Assembly 30694 na Scaffold_317 unplaced-scaffold na na JCANKO010000161.1 <> na Primary Assembly 30693 na Scaffold_690 unplaced-scaffold na na JCANKO010000162.1 <> na Primary Assembly 29710 na Scaffold_704 unplaced-scaffold na na JCANKO010000163.1 <> na Primary Assembly 29584 na Scaffold_325 unplaced-scaffold na na JCANKO010000164.1 <> na Primary Assembly 27549 na Scaffold_706 unplaced-scaffold na na JCANKO010000165.1 <> na Primary Assembly 26198 na Scaffold_707 unplaced-scaffold na na JCANKO010000166.1 <> na Primary Assembly 24296 na Scaffold_329 unplaced-scaffold na na JCANKO010000167.1 <> na Primary Assembly 24083 na Scaffold_709 unplaced-scaffold na na JCANKO010000168.1 <> na Primary Assembly 19981 na Scaffold_332 unplaced-scaffold na na JCANKO010000169.1 <> na Primary Assembly 19500 na Scaffold_711 unplaced-scaffold na na JCANKO010000170.1 <> na Primary Assembly 16254 na Scaffold_712 unplaced-scaffold na na JCANKO010000171.1 <> na Primary Assembly 14563 na Scaffold_713 unplaced-scaffold na na JCANKO010000172.1 <> na Primary Assembly 14388 na Scaffold_714 unplaced-scaffold na na JCANKO010000173.1 <> na Primary Assembly 12569 na