# Assembly name: fRivCyl1.hap2 # Organism name: Rivulus cylindraceus (green rivulus) # Isolate: fRivCyl1 # Sex: female # Taxid: 44707 # BioSample: SAMN59503656 # BioProject: PRJNA1463548 # Submitter: Vertebrate Genomes Project # Date: 2026-07-02 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBZXLH01 # Assembly method: Hifiasm + Hi-C phasing v. 0.25.0 + galaxy0; yahs v. 1.2a.2 + galaxy2 # Expected final version: No # Genome coverage: 45.71x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_058775155.1 # Linked assembly: GCA_058775085.1 (haplotype 1) # ## Assembly-Unit names: ## Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM179421.1 <> na Primary Assembly 39937274 na SUPER_2 assembled-molecule 2 Chromosome CM179422.1 <> na Primary Assembly 33354778 na SUPER_3 assembled-molecule 3 Chromosome CM179423.1 <> na Primary Assembly 31535387 na SUPER_4 assembled-molecule 4 Chromosome CM179424.1 <> na Primary Assembly 31436323 na SUPER_5 assembled-molecule 5 Chromosome CM179425.1 <> na Primary Assembly 31430879 na SUPER_6 assembled-molecule 6 Chromosome CM179426.1 <> na Primary Assembly 30445143 na SUPER_7 assembled-molecule 7 Chromosome CM179427.1 <> na Primary Assembly 29164074 na SUPER_8 assembled-molecule 8 Chromosome CM179428.1 <> na Primary Assembly 29518341 na SUPER_9 assembled-molecule 9 Chromosome CM179429.1 <> na Primary Assembly 26881167 na SUPER_10 assembled-molecule 10 Chromosome CM179430.1 <> na Primary Assembly 29021478 na SUPER_11 assembled-molecule 11 Chromosome CM179431.1 <> na Primary Assembly 27530166 na SUPER_12 assembled-molecule 12 Chromosome CM179432.1 <> na Primary Assembly 26526164 na SUPER_13 assembled-molecule 13 Chromosome CM179433.1 <> na Primary Assembly 27280858 na SUPER_14 assembled-molecule 14 Chromosome CM179434.1 <> na Primary Assembly 26460487 na SUPER_15 assembled-molecule 15 Chromosome CM179435.1 <> na Primary Assembly 24707543 na SUPER_16 assembled-molecule 16 Chromosome CM179436.1 <> na Primary Assembly 23654505 na SUPER_17 assembled-molecule 17 Chromosome CM179437.1 <> na Primary Assembly 22189452 na SUPER_18 assembled-molecule 18 Chromosome CM179438.1 <> na Primary Assembly 23427345 na SUPER_19 assembled-molecule 19 Chromosome CM179439.1 <> na Primary Assembly 23314725 na SUPER_20 assembled-molecule 20 Chromosome CM179440.1 <> na Primary Assembly 22454078 na SUPER_21 assembled-molecule 21 Chromosome CM179441.1 <> na Primary Assembly 22081087 na SUPER_22 assembled-molecule 22 Chromosome CM179442.1 <> na Primary Assembly 20170910 na SUPER_23 assembled-molecule 23 Chromosome CM179443.1 <> na Primary Assembly 17778642 na SUPER_24 assembled-molecule 24 Chromosome CM179444.1 <> na Primary Assembly 18141431 na SUPER_7_unloc_1 unlocalized-scaffold 7 Chromosome JBZXLH010000008.1 <> na Primary Assembly 126340 na SUPER_23_unloc_1 unlocalized-scaffold 23 Chromosome JBZXLH010000025.1 <> na Primary Assembly 226968 na scaffold_28_H2 unplaced-scaffold na na JBZXLH010000027.1 <> na Primary Assembly 221964 na scaffold_29_H2 unplaced-scaffold na na JBZXLH010000028.1 <> na Primary Assembly 198999 na scaffold_30_H2 unplaced-scaffold na na JBZXLH010000029.1 <> na Primary Assembly 197420 na scaffold_31_H2 unplaced-scaffold na na JBZXLH010000030.1 <> na Primary Assembly 156541 na scaffold_32_H2 unplaced-scaffold na na JBZXLH010000031.1 <> na Primary Assembly 149997 na scaffold_33_H2 unplaced-scaffold na na JBZXLH010000032.1 <> na Primary Assembly 149344 na scaffold_34_H2 unplaced-scaffold na na JBZXLH010000033.1 <> na Primary Assembly 144792 na scaffold_35_H2 unplaced-scaffold na na JBZXLH010000034.1 <> na Primary Assembly 144115 na scaffold_36_H2 unplaced-scaffold na na JBZXLH010000035.1 <> na Primary Assembly 137201 na scaffold_37_H2 unplaced-scaffold na na JBZXLH010000036.1 <> na Primary Assembly 124280 na scaffold_38_H2 unplaced-scaffold na na JBZXLH010000037.1 <> na Primary Assembly 123492 na scaffold_39_H2 unplaced-scaffold na na JBZXLH010000038.1 <> na Primary Assembly 115915 na scaffold_40_H2 unplaced-scaffold na na JBZXLH010000039.1 <> na Primary Assembly 99378 na scaffold_41_H2 unplaced-scaffold na na JBZXLH010000040.1 <> na Primary Assembly 96722 na scaffold_42_H2 unplaced-scaffold na na JBZXLH010000041.1 <> na Primary Assembly 92293 na scaffold_43_H2 unplaced-scaffold na na JBZXLH010000042.1 <> na Primary Assembly 77842 na scaffold_44_H2 unplaced-scaffold na na JBZXLH010000043.1 <> na Primary Assembly 76984 na scaffold_45_H2 unplaced-scaffold na na JBZXLH010000044.1 <> na Primary Assembly 74506 na scaffold_46_H2 unplaced-scaffold na na JBZXLH010000045.1 <> na Primary Assembly 73639 na scaffold_47_H2 unplaced-scaffold na na JBZXLH010000046.1 <> na Primary Assembly 72083 na scaffold_48_H2 unplaced-scaffold na na JBZXLH010000047.1 <> na Primary Assembly 70703 na scaffold_49_H2 unplaced-scaffold na na JBZXLH010000048.1 <> na Primary Assembly 70151 na scaffold_50_H2 unplaced-scaffold na na JBZXLH010000049.1 <> na Primary Assembly 69675 na scaffold_51_H2 unplaced-scaffold na na JBZXLH010000050.1 <> na Primary Assembly 68977 na scaffold_52_H2 unplaced-scaffold na na JBZXLH010000051.1 <> na Primary Assembly 68717 na scaffold_53_H2 unplaced-scaffold na na JBZXLH010000052.1 <> na Primary Assembly 67248 na scaffold_54_H2 unplaced-scaffold na na JBZXLH010000053.1 <> na Primary Assembly 66470 na scaffold_55_H2 unplaced-scaffold na na JBZXLH010000054.1 <> na Primary Assembly 65903 na scaffold_56_H2 unplaced-scaffold na na JBZXLH010000055.1 <> na Primary Assembly 63432 na scaffold_57_H2 unplaced-scaffold na na JBZXLH010000056.1 <> na Primary Assembly 63081 na scaffold_58_H2 unplaced-scaffold na na JBZXLH010000057.1 <> na Primary Assembly 62772 na scaffold_59_H2 unplaced-scaffold na na JBZXLH010000058.1 <> na Primary Assembly 60200 na scaffold_60_H2 unplaced-scaffold na na JBZXLH010000059.1 <> na Primary Assembly 59818 na scaffold_61_H2 unplaced-scaffold na na JBZXLH010000060.1 <> na Primary Assembly 58980 na scaffold_62_H2 unplaced-scaffold na na JBZXLH010000061.1 <> na Primary Assembly 58031 na scaffold_63_H2 unplaced-scaffold na na JBZXLH010000062.1 <> na Primary Assembly 57880 na scaffold_64_H2 unplaced-scaffold na na JBZXLH010000063.1 <> na Primary Assembly 56612 na scaffold_65_H2 unplaced-scaffold na na JBZXLH010000064.1 <> na Primary Assembly 56393 na scaffold_66_H2 unplaced-scaffold na na JBZXLH010000065.1 <> na Primary Assembly 55688 na scaffold_67_H2 unplaced-scaffold na na JBZXLH010000066.1 <> na Primary Assembly 54799 na scaffold_68_H2 unplaced-scaffold na na JBZXLH010000067.1 <> na Primary Assembly 54747 na scaffold_69_H2 unplaced-scaffold na na JBZXLH010000068.1 <> na Primary Assembly 54127 na scaffold_70_H2 unplaced-scaffold na na JBZXLH010000069.1 <> na Primary Assembly 52048 na scaffold_71_H2 unplaced-scaffold na na JBZXLH010000070.1 <> na Primary Assembly 51302 na scaffold_72_H2 unplaced-scaffold na na JBZXLH010000071.1 <> na Primary Assembly 50955 na scaffold_73_H2 unplaced-scaffold na na JBZXLH010000072.1 <> na Primary Assembly 50456 na scaffold_74_H2 unplaced-scaffold na na JBZXLH010000073.1 <> na Primary Assembly 50118 na scaffold_75_H2 unplaced-scaffold na na JBZXLH010000074.1 <> na Primary Assembly 48223 na scaffold_76_H2 unplaced-scaffold na na JBZXLH010000075.1 <> na Primary Assembly 47767 na scaffold_77_H2 unplaced-scaffold na na JBZXLH010000076.1 <> na Primary Assembly 47690 na scaffold_78_H2 unplaced-scaffold na na JBZXLH010000077.1 <> na Primary Assembly 47416 na scaffold_79_H2 unplaced-scaffold na na JBZXLH010000078.1 <> na Primary Assembly 46950 na scaffold_80_H2 unplaced-scaffold na na JBZXLH010000079.1 <> na Primary Assembly 46339 na scaffold_81_H2 unplaced-scaffold na na JBZXLH010000080.1 <> na Primary Assembly 45496 na scaffold_82_H2 unplaced-scaffold na na JBZXLH010000081.1 <> na Primary Assembly 44691 na scaffold_83_H2 unplaced-scaffold na na JBZXLH010000082.1 <> na Primary Assembly 43808 na scaffold_84_H2 unplaced-scaffold na na JBZXLH010000083.1 <> na Primary Assembly 43251 na scaffold_85_H2 unplaced-scaffold na na JBZXLH010000084.1 <> na Primary Assembly 42355 na scaffold_86_H2 unplaced-scaffold na na JBZXLH010000085.1 <> na Primary Assembly 42161 na scaffold_87_H2 unplaced-scaffold na na JBZXLH010000086.1 <> na Primary Assembly 39890 na scaffold_88_H2 unplaced-scaffold na na JBZXLH010000087.1 <> na Primary Assembly 39566 na scaffold_89_H2 unplaced-scaffold na na JBZXLH010000088.1 <> na Primary Assembly 38925 na scaffold_90_H2 unplaced-scaffold na na JBZXLH010000089.1 <> na Primary Assembly 38781 na scaffold_91_H2 unplaced-scaffold na na JBZXLH010000090.1 <> na Primary Assembly 38642 na scaffold_92_H2 unplaced-scaffold na na JBZXLH010000091.1 <> na Primary Assembly 37654 na scaffold_93_H2 unplaced-scaffold na na JBZXLH010000092.1 <> na Primary Assembly 37177 na scaffold_94_H2 unplaced-scaffold na na JBZXLH010000093.1 <> na Primary Assembly 37066 na scaffold_95_H2 unplaced-scaffold na na JBZXLH010000094.1 <> na Primary Assembly 36493 na scaffold_96_H2 unplaced-scaffold na na JBZXLH010000095.1 <> na Primary Assembly 36411 na scaffold_97_H2 unplaced-scaffold na na JBZXLH010000096.1 <> na Primary Assembly 36298 na scaffold_98_H2 unplaced-scaffold na na JBZXLH010000097.1 <> na Primary Assembly 36158 na scaffold_99_H2 unplaced-scaffold na na JBZXLH010000098.1 <> na Primary Assembly 35684 na scaffold_100_H2 unplaced-scaffold na na JBZXLH010000099.1 <> na Primary Assembly 35533 na scaffold_101_H2 unplaced-scaffold na na JBZXLH010000100.1 <> na Primary Assembly 35302 na scaffold_102_H2 unplaced-scaffold na na JBZXLH010000101.1 <> na Primary Assembly 35176 na scaffold_103_H2 unplaced-scaffold na na JBZXLH010000102.1 <> na Primary Assembly 34751 na scaffold_104_H2 unplaced-scaffold na na JBZXLH010000103.1 <> na Primary Assembly 33861 na scaffold_105_H2 unplaced-scaffold na na JBZXLH010000104.1 <> na Primary Assembly 33730 na scaffold_106_H2 unplaced-scaffold na na JBZXLH010000105.1 <> na Primary Assembly 32888 na scaffold_107_H2 unplaced-scaffold na na JBZXLH010000106.1 <> na Primary Assembly 28750 na scaffold_108_H2 unplaced-scaffold na na JBZXLH010000107.1 <> na Primary Assembly 27465 na scaffold_109_H2 unplaced-scaffold na na JBZXLH010000108.1 <> na Primary Assembly 27330 na scaffold_110_H2 unplaced-scaffold na na JBZXLH010000109.1 <> na Primary Assembly 27242 na scaffold_111_H2 unplaced-scaffold na na JBZXLH010000110.1 <> na Primary Assembly 26964 na scaffold_112_H2 unplaced-scaffold na na JBZXLH010000111.1 <> na Primary Assembly 26261 na scaffold_113_H2 unplaced-scaffold na na JBZXLH010000112.1 <> na Primary Assembly 22354 na scaffold_114_H2 unplaced-scaffold na na JBZXLH010000113.1 <> na Primary Assembly 21564 na scaffold_115_H2 unplaced-scaffold na na JBZXLH010000114.1 <> na Primary Assembly 20881 na scaffold_116_H2 unplaced-scaffold na na JBZXLH010000115.1 <> na Primary Assembly 15345 na scaffold_117_H2 unplaced-scaffold na na JBZXLH010000116.1 <> na Primary Assembly 11910 na scaffold_118_H2 unplaced-scaffold na na JBZXLH010000117.1 <> na Primary Assembly 11220 na