# Assembly name:  fAplLin1.hap1
# Organism name:  Aplocheilus lineatus (striped panchax)
# Isolate:  fAplLin1
# Sex:  male
# Taxid:          52580
# BioSample:      SAMN59730120
# BioProject:     PRJNA1465739
# Submitter:      Vertebrate Genomes Project
# Date:           2026-06-16
# Assembly type:  haploid (haplotype 1)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBZCOU01
# Assembly method: Hifiasm + Hi-C phasing v. 0.25.0 + galaxy0; yahs v. 1.2a.2 + galaxy3
# Expected final version: No
# Genome coverage: 108.18x
# Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_058223795.1
# Linked assembly: GCA_058223775.1 (haplotype 2)
#
## Assembly-Unit names:
## Primary Assembly
## non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM177420.1	<>	na	Primary Assembly	30898733	na
SUPER_2	assembled-molecule	2	Chromosome	CM177421.1	<>	na	Primary Assembly	30847773	na
SUPER_3	assembled-molecule	3	Chromosome	CM177422.1	<>	na	Primary Assembly	30515413	na
SUPER_4	assembled-molecule	4	Chromosome	CM177423.1	<>	na	Primary Assembly	28837994	na
SUPER_5	assembled-molecule	5	Chromosome	CM177424.1	<>	na	Primary Assembly	28471408	na
SUPER_6	assembled-molecule	6	Chromosome	CM177425.1	<>	na	Primary Assembly	28322331	na
SUPER_7	assembled-molecule	7	Chromosome	CM177426.1	<>	na	Primary Assembly	28106985	na
SUPER_8	assembled-molecule	8	Chromosome	CM177427.1	<>	na	Primary Assembly	27781024	na
SUPER_9	assembled-molecule	9	Chromosome	CM177428.1	<>	na	Primary Assembly	26322433	na
SUPER_10	assembled-molecule	10	Chromosome	CM177429.1	<>	na	Primary Assembly	26197685	na
SUPER_11	assembled-molecule	11	Chromosome	CM177430.1	<>	na	Primary Assembly	25232947	na
SUPER_12	assembled-molecule	12	Chromosome	CM177431.1	<>	na	Primary Assembly	24331449	na
SUPER_13	assembled-molecule	13	Chromosome	CM177432.1	<>	na	Primary Assembly	24273030	na
SUPER_14	assembled-molecule	14	Chromosome	CM177433.1	<>	na	Primary Assembly	24084713	na
SUPER_15	assembled-molecule	15	Chromosome	CM177434.1	<>	na	Primary Assembly	23885120	na
SUPER_16	assembled-molecule	16	Chromosome	CM177435.1	<>	na	Primary Assembly	23640214	na
SUPER_17	assembled-molecule	17	Chromosome	CM177436.1	<>	na	Primary Assembly	22734970	na
SUPER_18	assembled-molecule	18	Chromosome	CM177437.1	<>	na	Primary Assembly	21662784	na
SUPER_19	assembled-molecule	19	Chromosome	CM177438.1	<>	na	Primary Assembly	20664189	na
SUPER_20	assembled-molecule	20	Chromosome	CM177439.1	<>	na	Primary Assembly	20336009	na
SUPER_21	assembled-molecule	21	Chromosome	CM177440.1	<>	na	Primary Assembly	20288633	na
SUPER_22	assembled-molecule	22	Chromosome	CM177441.1	<>	na	Primary Assembly	20043995	na
SUPER_23	assembled-molecule	23	Chromosome	CM177442.1	<>	na	Primary Assembly	19584306	na
SUPER_24	assembled-molecule	24	Chromosome	CM177443.1	<>	na	Primary Assembly	16598486	na
Scaffold_5.H1	unplaced-scaffold	na	na	JBZCOU010000026.1	<>	na	Primary Assembly	92007	na
Scaffold_24.H1	unplaced-scaffold	na	na	JBZCOU010000027.1	<>	na	Primary Assembly	1731972	na
Scaffold_28.H1	unplaced-scaffold	na	na	JBZCOU010000028.1	<>	na	Primary Assembly	252682	na
Scaffold_61.H1	unplaced-scaffold	na	na	JBZCOU010000029.1	<>	na	Primary Assembly	46862	na
Scaffold_63.H1	unplaced-scaffold	na	na	JBZCOU010000030.1	<>	na	Primary Assembly	46056	na
Scaffold_104.H1	unplaced-scaffold	na	na	JBZCOU010000031.1	<>	na	Primary Assembly	32291	na
Scaffold_122.H1	unplaced-scaffold	na	na	JBZCOU010000032.1	<>	na	Primary Assembly	28385	na
Scaffold_180.H1	unplaced-scaffold	na	na	JBZCOU010000033.1	<>	na	Primary Assembly	18026	na
ptg000022l_rc_rotated	assembled-molecule	MT	Mitochondrion	CM177444.1	<>	na	non-nuclear	16553	na