# Assembly name:  mZapHud1.hap2
# Organism name:  Zapus hudsonius preblei (Preble's meadow jumping mouse)
# Isolate:  mZapHud1
# Sex:  male
# Taxid:          289486
# BioSample:      SAMN57447948
# BioProject:     PRJNA1457134
# Submitter:      Vertebrate Genomes Project
# Date:           2026-06-04
# Assembly type:  haploid (haplotype 2)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBYDFF01
# Assembly method: Hifiasm + Hi-C phasing v. 0.20.0 + galaxy0; yahs v. 1.2a.2 + galaxy2
# Expected final version: No
# Genome coverage: 48.2x
# Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2
# GenBank assembly accession: GCA_057945655.1
# Linked assembly: GCA_057945845.1 (haplotype 1)
#
## Assembly-Unit names:
## Primary Assembly
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM175958.1	<>	na	Primary Assembly	181227392	na
SUPER_2	assembled-molecule	2	Chromosome	CM175959.1	<>	na	Primary Assembly	142591650	na
SUPER_3	assembled-molecule	3	Chromosome	CM175960.1	<>	na	Primary Assembly	140039016	na
SUPER_4	assembled-molecule	4	Chromosome	CM175961.1	<>	na	Primary Assembly	109575370	na
SUPER_5	assembled-molecule	5	Chromosome	CM175962.1	<>	na	Primary Assembly	101147289	na
SUPER_6	assembled-molecule	6	Chromosome	CM175963.1	<>	na	Primary Assembly	100867151	na
SUPER_7	assembled-molecule	7	Chromosome	CM175964.1	<>	na	Primary Assembly	95165644	na
SUPER_8	assembled-molecule	8	Chromosome	CM175965.1	<>	na	Primary Assembly	93579643	na
SUPER_9	assembled-molecule	9	Chromosome	CM175966.1	<>	na	Primary Assembly	85227547	na
SUPER_10	assembled-molecule	10	Chromosome	CM175967.1	<>	na	Primary Assembly	67904185	na
SUPER_11	assembled-molecule	11	Chromosome	CM175968.1	<>	na	Primary Assembly	60926520	na
SUPER_12	assembled-molecule	12	Chromosome	CM175969.1	<>	na	Primary Assembly	60614741	na
SUPER_13	assembled-molecule	13	Chromosome	CM175970.1	<>	na	Primary Assembly	59128315	na
SUPER_14	assembled-molecule	14	Chromosome	CM175971.1	<>	na	Primary Assembly	54453383	na
SUPER_15	assembled-molecule	15	Chromosome	CM175972.1	<>	na	Primary Assembly	56015493	na
SUPER_16	assembled-molecule	16	Chromosome	CM175973.1	<>	na	Primary Assembly	53087722	na
SUPER_17	assembled-molecule	17	Chromosome	CM175974.1	<>	na	Primary Assembly	54172450	na
SUPER_18	assembled-molecule	18	Chromosome	CM175975.1	<>	na	Primary Assembly	53070018	na
SUPER_19	assembled-molecule	19	Chromosome	CM175976.1	<>	na	Primary Assembly	50141620	na
SUPER_20	assembled-molecule	20	Chromosome	CM175977.1	<>	na	Primary Assembly	44754539	na
SUPER_21	assembled-molecule	21	Chromosome	CM175978.1	<>	na	Primary Assembly	44971954	na
SUPER_22	assembled-molecule	22	Chromosome	CM175979.1	<>	na	Primary Assembly	41889999	na
SUPER_23	assembled-molecule	23	Chromosome	CM175980.1	<>	na	Primary Assembly	39911084	na
SUPER_24	assembled-molecule	24	Chromosome	CM175981.1	<>	na	Primary Assembly	38448727	na
SUPER_25	assembled-molecule	25	Chromosome	CM175982.1	<>	na	Primary Assembly	36986908	na
SUPER_26	assembled-molecule	26	Chromosome	CM175983.1	<>	na	Primary Assembly	32358639	na
SUPER_27	assembled-molecule	27	Chromosome	CM175984.1	<>	na	Primary Assembly	23790276	na
SUPER_28	assembled-molecule	28	Chromosome	CM175985.1	<>	na	Primary Assembly	27790847	na
SUPER_29	assembled-molecule	29	Chromosome	CM175986.1	<>	na	Primary Assembly	27694587	na
SUPER_30	assembled-molecule	30	Chromosome	CM175987.1	<>	na	Primary Assembly	27417277	na
SUPER_31	assembled-molecule	31	Chromosome	CM175988.1	<>	na	Primary Assembly	27305028	na
SUPER_32	assembled-molecule	32	Chromosome	CM175989.1	<>	na	Primary Assembly	23645855	na
SUPER_33	assembled-molecule	33	Chromosome	CM175990.1	<>	na	Primary Assembly	23387319	na
SUPER_34	assembled-molecule	34	Chromosome	CM175991.1	<>	na	Primary Assembly	22056245	na
SUPER_35	assembled-molecule	35	Chromosome	CM175992.1	<>	na	Primary Assembly	21291744	na
SUPER_2_unloc_1	unlocalized-scaffold	2	Chromosome	JBYDFF010000063.1	<>	na	Primary Assembly	171635	na
SUPER_4_unloc_1	unlocalized-scaffold	4	Chromosome	JBYDFF010000040.1	<>	na	Primary Assembly	436059	na
SUPER_5_unloc_1	unlocalized-scaffold	5	Chromosome	JBYDFF010000075.1	<>	na	Primary Assembly	129200	na
SUPER_7_unloc_2	unlocalized-scaffold	7	Chromosome	JBYDFF010000045.1	<>	na	Primary Assembly	278465	na
SUPER_7_unloc_1	unlocalized-scaffold	7	Chromosome	JBYDFF010000050.1	<>	na	Primary Assembly	224931	na
SUPER_9_unloc_1	unlocalized-scaffold	9	Chromosome	JBYDFF010000037.1	<>	na	Primary Assembly	504901	na
SUPER_18_unloc_4	unlocalized-scaffold	18	Chromosome	JBYDFF010000038.1	<>	na	Primary Assembly	494587	na
SUPER_18_unloc_3	unlocalized-scaffold	18	Chromosome	JBYDFF010000039.1	<>	na	Primary Assembly	447829	na
SUPER_18_unloc_2	unlocalized-scaffold	18	Chromosome	JBYDFF010000044.1	<>	na	Primary Assembly	287757	na
SUPER_18_unloc_1	unlocalized-scaffold	18	Chromosome	JBYDFF010000054.1	<>	na	Primary Assembly	210415	na
SUPER_22_unloc_1	unlocalized-scaffold	22	Chromosome	JBYDFF010000043.1	<>	na	Primary Assembly	290666	na
Scaffold_96	unplaced-scaffold	na	na	JBYDFF010000036.1	<>	na	Primary Assembly	1951660	na
Scaffold_76	unplaced-scaffold	na	na	JBYDFF010000041.1	<>	na	Primary Assembly	365179	na
Scaffold_83	unplaced-scaffold	na	na	JBYDFF010000042.1	<>	na	Primary Assembly	333212	na
Scaffold_80	unplaced-scaffold	na	na	JBYDFF010000046.1	<>	na	Primary Assembly	258067	na
Scaffold_87	unplaced-scaffold	na	na	JBYDFF010000047.1	<>	na	Primary Assembly	254169	na
Scaffold_89	unplaced-scaffold	na	na	JBYDFF010000048.1	<>	na	Primary Assembly	251821	na
Scaffold_91	unplaced-scaffold	na	na	JBYDFF010000049.1	<>	na	Primary Assembly	237912	na
Scaffold_94	unplaced-scaffold	na	na	JBYDFF010000051.1	<>	na	Primary Assembly	216235	na
Scaffold_95	unplaced-scaffold	na	na	JBYDFF010000052.1	<>	na	Primary Assembly	213076	na
Scaffold_97	unplaced-scaffold	na	na	JBYDFF010000053.1	<>	na	Primary Assembly	212182	na
Scaffold_98	unplaced-scaffold	na	na	JBYDFF010000055.1	<>	na	Primary Assembly	209107	na
Scaffold_100	unplaced-scaffold	na	na	JBYDFF010000056.1	<>	na	Primary Assembly	207340	na
Scaffold_103	unplaced-scaffold	na	na	JBYDFF010000057.1	<>	na	Primary Assembly	198809	na
Scaffold_104	unplaced-scaffold	na	na	JBYDFF010000058.1	<>	na	Primary Assembly	196981	na
Scaffold_105	unplaced-scaffold	na	na	JBYDFF010000059.1	<>	na	Primary Assembly	193808	na
Scaffold_106	unplaced-scaffold	na	na	JBYDFF010000060.1	<>	na	Primary Assembly	190981	na
Scaffold_111	unplaced-scaffold	na	na	JBYDFF010000061.1	<>	na	Primary Assembly	179630	na
Scaffold_74	unplaced-scaffold	na	na	JBYDFF010000062.1	<>	na	Primary Assembly	173850	na
Scaffold_114	unplaced-scaffold	na	na	JBYDFF010000064.1	<>	na	Primary Assembly	166683	na
Scaffold_116	unplaced-scaffold	na	na	JBYDFF010000065.1	<>	na	Primary Assembly	165333	na
Scaffold_118	unplaced-scaffold	na	na	JBYDFF010000066.1	<>	na	Primary Assembly	162462	na
Scaffold_121	unplaced-scaffold	na	na	JBYDFF010000067.1	<>	na	Primary Assembly	159318	na
Scaffold_122	unplaced-scaffold	na	na	JBYDFF010000068.1	<>	na	Primary Assembly	158742	na
Scaffold_128	unplaced-scaffold	na	na	JBYDFF010000069.1	<>	na	Primary Assembly	150990	na
Scaffold_130	unplaced-scaffold	na	na	JBYDFF010000070.1	<>	na	Primary Assembly	146032	na
Scaffold_73	unplaced-scaffold	na	na	JBYDFF010000071.1	<>	na	Primary Assembly	145267	na
Scaffold_133	unplaced-scaffold	na	na	JBYDFF010000072.1	<>	na	Primary Assembly	139769	na
Scaffold_134	unplaced-scaffold	na	na	JBYDFF010000073.1	<>	na	Primary Assembly	136028	na
Scaffold_135	unplaced-scaffold	na	na	JBYDFF010000074.1	<>	na	Primary Assembly	134585	na
Scaffold_136	unplaced-scaffold	na	na	JBYDFF010000076.1	<>	na	Primary Assembly	128766	na
Scaffold_137	unplaced-scaffold	na	na	JBYDFF010000077.1	<>	na	Primary Assembly	127927	na
Scaffold_138	unplaced-scaffold	na	na	JBYDFF010000078.1	<>	na	Primary Assembly	127464	na
Scaffold_139	unplaced-scaffold	na	na	JBYDFF010000079.1	<>	na	Primary Assembly	127442	na
Scaffold_540	unplaced-scaffold	na	na	JBYDFF010000080.1	<>	na	Primary Assembly	127019	na
Scaffold_141	unplaced-scaffold	na	na	JBYDFF010000081.1	<>	na	Primary Assembly	126831	na
Scaffold_145	unplaced-scaffold	na	na	JBYDFF010000082.1	<>	na	Primary Assembly	117860	na
Scaffold_147	unplaced-scaffold	na	na	JBYDFF010000083.1	<>	na	Primary Assembly	112562	na
Scaffold_148	unplaced-scaffold	na	na	JBYDFF010000084.1	<>	na	Primary Assembly	112290	na
Scaffold_489	unplaced-scaffold	na	na	JBYDFF010000085.1	<>	na	Primary Assembly	109250	na
Scaffold_151	unplaced-scaffold	na	na	JBYDFF010000086.1	<>	na	Primary Assembly	107860	na
Scaffold_153	unplaced-scaffold	na	na	JBYDFF010000087.1	<>	na	Primary Assembly	103679	na
Scaffold_154	unplaced-scaffold	na	na	JBYDFF010000088.1	<>	na	Primary Assembly	94255	na
Scaffold_494	unplaced-scaffold	na	na	JBYDFF010000089.1	<>	na	Primary Assembly	89831	na
Scaffold_155	unplaced-scaffold	na	na	JBYDFF010000090.1	<>	na	Primary Assembly	89474	na
Scaffold_496	unplaced-scaffold	na	na	JBYDFF010000091.1	<>	na	Primary Assembly	85348	na
Scaffold_158	unplaced-scaffold	na	na	JBYDFF010000092.1	<>	na	Primary Assembly	83381	na
Scaffold_498	unplaced-scaffold	na	na	JBYDFF010000093.1	<>	na	Primary Assembly	82467	na
Scaffold_160	unplaced-scaffold	na	na	JBYDFF010000094.1	<>	na	Primary Assembly	82370	na
Scaffold_500	unplaced-scaffold	na	na	JBYDFF010000095.1	<>	na	Primary Assembly	81754	na
Scaffold_487	unplaced-scaffold	na	na	JBYDFF010000096.1	<>	na	Primary Assembly	78006	na
Scaffold_165	unplaced-scaffold	na	na	JBYDFF010000097.1	<>	na	Primary Assembly	76381	na
Scaffold_166	unplaced-scaffold	na	na	JBYDFF010000098.1	<>	na	Primary Assembly	76247	na
Scaffold_504	unplaced-scaffold	na	na	JBYDFF010000099.1	<>	na	Primary Assembly	72165	na
Scaffold_505	unplaced-scaffold	na	na	JBYDFF010000100.1	<>	na	Primary Assembly	70781	na
Scaffold_506	unplaced-scaffold	na	na	JBYDFF010000101.1	<>	na	Primary Assembly	66033	na
Scaffold_174	unplaced-scaffold	na	na	JBYDFF010000102.1	<>	na	Primary Assembly	65332	na
Scaffold_175	unplaced-scaffold	na	na	JBYDFF010000103.1	<>	na	Primary Assembly	64952	na
Scaffold_509	unplaced-scaffold	na	na	JBYDFF010000104.1	<>	na	Primary Assembly	64739	na
Scaffold_510	unplaced-scaffold	na	na	JBYDFF010000105.1	<>	na	Primary Assembly	63963	na
Scaffold_511	unplaced-scaffold	na	na	JBYDFF010000106.1	<>	na	Primary Assembly	61979	na
Scaffold_179	unplaced-scaffold	na	na	JBYDFF010000107.1	<>	na	Primary Assembly	60071	na
Scaffold_513	unplaced-scaffold	na	na	JBYDFF010000108.1	<>	na	Primary Assembly	59317	na
Scaffold_180	unplaced-scaffold	na	na	JBYDFF010000109.1	<>	na	Primary Assembly	59045	na
Scaffold_181	unplaced-scaffold	na	na	JBYDFF010000110.1	<>	na	Primary Assembly	58861	na
Scaffold_572	unplaced-scaffold	na	na	JBYDFF010000111.1	<>	na	Primary Assembly	57821	na
Scaffold_573	unplaced-scaffold	na	na	JBYDFF010000112.1	<>	na	Primary Assembly	57343	na
Scaffold_183	unplaced-scaffold	na	na	JBYDFF010000113.1	<>	na	Primary Assembly	56915	na
Scaffold_575	unplaced-scaffold	na	na	JBYDFF010000114.1	<>	na	Primary Assembly	56798	na
Scaffold_184	unplaced-scaffold	na	na	JBYDFF010000115.1	<>	na	Primary Assembly	56329	na
Scaffold_577	unplaced-scaffold	na	na	JBYDFF010000116.1	<>	na	Primary Assembly	56322	na
Scaffold_185	unplaced-scaffold	na	na	JBYDFF010000117.1	<>	na	Primary Assembly	56034	na
Scaffold_579	unplaced-scaffold	na	na	JBYDFF010000118.1	<>	na	Primary Assembly	55852	na
Scaffold_580	unplaced-scaffold	na	na	JBYDFF010000119.1	<>	na	Primary Assembly	55081	na
Scaffold_187	unplaced-scaffold	na	na	JBYDFF010000120.1	<>	na	Primary Assembly	54327	na
Scaffold_582	unplaced-scaffold	na	na	JBYDFF010000121.1	<>	na	Primary Assembly	53619	na
Scaffold_583	unplaced-scaffold	na	na	JBYDFF010000122.1	<>	na	Primary Assembly	53386	na
Scaffold_571	unplaced-scaffold	na	na	JBYDFF010000123.1	<>	na	Primary Assembly	53258	na
Scaffold_585	unplaced-scaffold	na	na	JBYDFF010000124.1	<>	na	Primary Assembly	53249	na
Scaffold_190	unplaced-scaffold	na	na	JBYDFF010000125.1	<>	na	Primary Assembly	52918	na
Scaffold_587	unplaced-scaffold	na	na	JBYDFF010000126.1	<>	na	Primary Assembly	52709	na
Scaffold_588	unplaced-scaffold	na	na	JBYDFF010000127.1	<>	na	Primary Assembly	52275	na
Scaffold_589	unplaced-scaffold	na	na	JBYDFF010000128.1	<>	na	Primary Assembly	51800	na
Scaffold_192	unplaced-scaffold	na	na	JBYDFF010000129.1	<>	na	Primary Assembly	51617	na
Scaffold_591	unplaced-scaffold	na	na	JBYDFF010000130.1	<>	na	Primary Assembly	51549	na
Scaffold_592	unplaced-scaffold	na	na	JBYDFF010000131.1	<>	na	Primary Assembly	50212	na
Scaffold_593	unplaced-scaffold	na	na	JBYDFF010000132.1	<>	na	Primary Assembly	50128	na
Scaffold_594	unplaced-scaffold	na	na	JBYDFF010000133.1	<>	na	Primary Assembly	49626	na
Scaffold_196	unplaced-scaffold	na	na	JBYDFF010000134.1	<>	na	Primary Assembly	49483	na
Scaffold_199	unplaced-scaffold	na	na	JBYDFF010000135.1	<>	na	Primary Assembly	47909	na
Scaffold_557	unplaced-scaffold	na	na	JBYDFF010000136.1	<>	na	Primary Assembly	47866	na
Scaffold_200	unplaced-scaffold	na	na	JBYDFF010000137.1	<>	na	Primary Assembly	47712	na
Scaffold_545	unplaced-scaffold	na	na	JBYDFF010000138.1	<>	na	Primary Assembly	47580	na
Scaffold_546	unplaced-scaffold	na	na	JBYDFF010000139.1	<>	na	Primary Assembly	47210	na
Scaffold_547	unplaced-scaffold	na	na	JBYDFF010000140.1	<>	na	Primary Assembly	46857	na
Scaffold_202	unplaced-scaffold	na	na	JBYDFF010000141.1	<>	na	Primary Assembly	46186	na
Scaffold_549	unplaced-scaffold	na	na	JBYDFF010000142.1	<>	na	Primary Assembly	45284	na
Scaffold_203	unplaced-scaffold	na	na	JBYDFF010000143.1	<>	na	Primary Assembly	45073	na
Scaffold_204	unplaced-scaffold	na	na	JBYDFF010000144.1	<>	na	Primary Assembly	42936	na
Scaffold_552	unplaced-scaffold	na	na	JBYDFF010000145.1	<>	na	Primary Assembly	42899	na
Scaffold_553	unplaced-scaffold	na	na	JBYDFF010000146.1	<>	na	Primary Assembly	42691	na
Scaffold_205	unplaced-scaffold	na	na	JBYDFF010000147.1	<>	na	Primary Assembly	42638	na
Scaffold_555	unplaced-scaffold	na	na	JBYDFF010000148.1	<>	na	Primary Assembly	42612	na
Scaffold_556	unplaced-scaffold	na	na	JBYDFF010000149.1	<>	na	Primary Assembly	42503	na
Scaffold_208	unplaced-scaffold	na	na	JBYDFF010000150.1	<>	na	Primary Assembly	40067	na
Scaffold_558	unplaced-scaffold	na	na	JBYDFF010000151.1	<>	na	Primary Assembly	39655	na
Scaffold_559	unplaced-scaffold	na	na	JBYDFF010000152.1	<>	na	Primary Assembly	39173	na
Scaffold_560	unplaced-scaffold	na	na	JBYDFF010000153.1	<>	na	Primary Assembly	36292	na
Scaffold_211	unplaced-scaffold	na	na	JBYDFF010000154.1	<>	na	Primary Assembly	35105	na
Scaffold_562	unplaced-scaffold	na	na	JBYDFF010000155.1	<>	na	Primary Assembly	34793	na
Scaffold_563	unplaced-scaffold	na	na	JBYDFF010000156.1	<>	na	Primary Assembly	34044	na
Scaffold_564	unplaced-scaffold	na	na	JBYDFF010000157.1	<>	na	Primary Assembly	33240	na
Scaffold_565	unplaced-scaffold	na	na	JBYDFF010000158.1	<>	na	Primary Assembly	32482	na
Scaffold_566	unplaced-scaffold	na	na	JBYDFF010000159.1	<>	na	Primary Assembly	31812	na
Scaffold_567	unplaced-scaffold	na	na	JBYDFF010000160.1	<>	na	Primary Assembly	31622	na
Scaffold_568	unplaced-scaffold	na	na	JBYDFF010000161.1	<>	na	Primary Assembly	31207	na
Scaffold_569	unplaced-scaffold	na	na	JBYDFF010000162.1	<>	na	Primary Assembly	27800	na
Scaffold_570	unplaced-scaffold	na	na	JBYDFF010000163.1	<>	na	Primary Assembly	17272	na