# Assembly name: bMyiOra2.hap1 # Organism name: Myioborus ornatus (birds) # Isolate: bMyiOra2 # Sex: female # Taxid: 328440 # BioSample: SAMN57316997 # BioProject: PRJNA1454680 # Submitter: Vertebrate Genomes Project # Date: 2026-06-01 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBXYJJ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.25.0 + galaxy0; yahs v. 1.2a.2 + galaxy2 # Expected final version: No # Genome coverage: 79.0x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_057814835.1 # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM174177.1 <> na Primary Assembly 158917255 na SUPER_2 assembled-molecule 2 Chromosome CM174178.1 <> na Primary Assembly 130608176 na SUPER_3 assembled-molecule 3 Chromosome CM174179.1 <> na Primary Assembly 120649064 na SUPER_4 assembled-molecule 4 Chromosome CM174180.1 <> na Primary Assembly 80843195 na SUPER_5 assembled-molecule 5 Chromosome CM174181.1 <> na Primary Assembly 78296600 na SUPER_6 assembled-molecule 6 Chromosome CM174182.1 <> na Primary Assembly 73508879 na SUPER_7 assembled-molecule 7 Chromosome CM174183.1 <> na Primary Assembly 44411302 na SUPER_8 assembled-molecule 8 Chromosome CM174184.1 <> na Primary Assembly 43261483 na SUPER_9 assembled-molecule 9 Chromosome CM174185.1 <> na Primary Assembly 38977616 na SUPER_10 assembled-molecule 10 Chromosome CM174186.1 <> na Primary Assembly 32040650 na SUPER_11 assembled-molecule 11 Chromosome CM174187.1 <> na Primary Assembly 28762027 na SUPER_12 assembled-molecule 12 Chromosome CM174188.1 <> na Primary Assembly 27127643 na SUPER_13 assembled-molecule 13 Chromosome CM174189.1 <> na Primary Assembly 26017619 na SUPER_14 assembled-molecule 14 Chromosome CM174190.1 <> na Primary Assembly 25572878 na SUPER_15 assembled-molecule 15 Chromosome CM174191.1 <> na Primary Assembly 22915354 na SUPER_16 assembled-molecule 16 Chromosome CM174192.1 <> na Primary Assembly 19857968 na SUPER_17 assembled-molecule 17 Chromosome CM174193.1 <> na Primary Assembly 18327061 na SUPER_18 assembled-molecule 18 Chromosome CM174194.1 <> na Primary Assembly 18082337 na SUPER_19 assembled-molecule 19 Chromosome CM174195.1 <> na Primary Assembly 16996934 na SUPER_20 assembled-molecule 20 Chromosome CM174196.1 <> na Primary Assembly 15505383 na SUPER_21 assembled-molecule 21 Chromosome CM174197.1 <> na Primary Assembly 15084692 na SUPER_22 assembled-molecule 22 Chromosome CM174198.1 <> na Primary Assembly 14407820 na SUPER_23 assembled-molecule 23 Chromosome CM174199.1 <> na Primary Assembly 13193370 na SUPER_24 assembled-molecule 24 Chromosome CM174200.1 <> na Primary Assembly 11857007 na SUPER_25 assembled-molecule 25 Chromosome CM174201.1 <> na Primary Assembly 11396174 na SUPER_26 assembled-molecule 26 Chromosome CM174202.1 <> na Primary Assembly 11298340 na SUPER_27 assembled-molecule 27 Chromosome CM174203.1 <> na Primary Assembly 10371908 na SUPER_28 assembled-molecule 28 Chromosome CM174204.1 <> na Primary Assembly 9595247 na SUPER_29 assembled-molecule 29 Chromosome CM174205.1 <> na Primary Assembly 9235042 na SUPER_30 assembled-molecule 30 Chromosome CM174206.1 <> na Primary Assembly 8843989 na SUPER_31 assembled-molecule 31 Chromosome CM174207.1 <> na Primary Assembly 8500307 na SUPER_32 assembled-molecule 32 Chromosome CM174208.1 <> na Primary Assembly 8147643 na SUPER_33 assembled-molecule 33 Chromosome CM174209.1 <> na Primary Assembly 8034590 na SUPER_34 assembled-molecule 34 Chromosome CM174210.1 <> na Primary Assembly 7694017 na SUPER_35 assembled-molecule 35 Chromosome CM174211.1 <> na Primary Assembly 7338932 na SUPER_36 assembled-molecule 36 Chromosome CM174212.1 <> na Primary Assembly 6993185 na SUPER_37 assembled-molecule 37 Chromosome CM174213.1 <> na Primary Assembly 6836243 na SUPER_38 assembled-molecule 38 Chromosome CM174214.1 <> na Primary Assembly 6453282 na SUPER_39 assembled-molecule 39 Chromosome CM174215.1 <> na Primary Assembly 6418866 na SUPER_W assembled-molecule W Chromosome CM174216.1 <> na Primary Assembly 24421286 na SUPER_Z assembled-molecule Z Chromosome CM174217.1 <> na Primary Assembly 83690065 na SUPER_4_unloc_1 unlocalized-scaffold 4 Chromosome JBXYJJ010000043.1 <> na Primary Assembly 133605 na SUPER_32_unloc_1 unlocalized-scaffold 32 Chromosome JBXYJJ010000049.1 <> na Primary Assembly 104139 na Scaffold_87 unplaced-scaffold na na JBXYJJ010000044.1 <> na Primary Assembly 121290 na Scaffold_84 unplaced-scaffold na na JBXYJJ010000045.1 <> na Primary Assembly 118765 na Scaffold_89 unplaced-scaffold na na JBXYJJ010000046.1 <> na Primary Assembly 112644 na Scaffold_83 unplaced-scaffold na na JBXYJJ010000047.1 <> na Primary Assembly 111443 na Scaffold_90 unplaced-scaffold na na JBXYJJ010000048.1 <> na Primary Assembly 108260 na Scaffold_91 unplaced-scaffold na na JBXYJJ010000050.1 <> na Primary Assembly 103460 na Scaffold_92 unplaced-scaffold na na JBXYJJ010000051.1 <> na Primary Assembly 101655 na Scaffold_93 unplaced-scaffold na na JBXYJJ010000052.1 <> na Primary Assembly 98797 na Scaffold_94 unplaced-scaffold na na JBXYJJ010000053.1 <> na Primary Assembly 96824 na Scaffold_97 unplaced-scaffold na na JBXYJJ010000054.1 <> na Primary Assembly 82153 na Scaffold_99 unplaced-scaffold na na JBXYJJ010000055.1 <> na Primary Assembly 75581 na Scaffold_101 unplaced-scaffold na na JBXYJJ010000056.1 <> na Primary Assembly 74846 na Scaffold_102 unplaced-scaffold na na JBXYJJ010000057.1 <> na Primary Assembly 73791 na Scaffold_103 unplaced-scaffold na na JBXYJJ010000058.1 <> na Primary Assembly 72942 na Scaffold_104 unplaced-scaffold na na JBXYJJ010000059.1 <> na Primary Assembly 72055 na Scaffold_105 unplaced-scaffold na na JBXYJJ010000060.1 <> na Primary Assembly 70868 na Scaffold_151 unplaced-scaffold na na JBXYJJ010000061.1 <> na Primary Assembly 64710 na Scaffold_109 unplaced-scaffold na na JBXYJJ010000062.1 <> na Primary Assembly 60048 na Scaffold_113 unplaced-scaffold na na JBXYJJ010000063.1 <> na Primary Assembly 55319 na Scaffold_114 unplaced-scaffold na na JBXYJJ010000064.1 <> na Primary Assembly 54452 na Scaffold_115 unplaced-scaffold na na JBXYJJ010000065.1 <> na Primary Assembly 52807 na Scaffold_195 unplaced-scaffold na na JBXYJJ010000066.1 <> na Primary Assembly 52403 na Scaffold_116 unplaced-scaffold na na JBXYJJ010000067.1 <> na Primary Assembly 51925 na Scaffold_117 unplaced-scaffold na na JBXYJJ010000068.1 <> na Primary Assembly 51525 na Scaffold_192 unplaced-scaffold na na JBXYJJ010000069.1 <> na Primary Assembly 50647 na Scaffold_118 unplaced-scaffold na na JBXYJJ010000070.1 <> na Primary Assembly 47438 na Scaffold_190 unplaced-scaffold na na JBXYJJ010000071.1 <> na Primary Assembly 43890 na Scaffold_122 unplaced-scaffold na na JBXYJJ010000072.1 <> na Primary Assembly 40398 na Scaffold_188 unplaced-scaffold na na JBXYJJ010000073.1 <> na Primary Assembly 39945 na Scaffold_123 unplaced-scaffold na na JBXYJJ010000074.1 <> na Primary Assembly 39580 na Scaffold_186 unplaced-scaffold na na JBXYJJ010000075.1 <> na Primary Assembly 39058 na Scaffold_185 unplaced-scaffold na na JBXYJJ010000076.1 <> na Primary Assembly 38634 na Scaffold_125 unplaced-scaffold na na JBXYJJ010000077.1 <> na Primary Assembly 37802 na Scaffold_168 unplaced-scaffold na na JBXYJJ010000078.1 <> na Primary Assembly 36987 na Scaffold_127 unplaced-scaffold na na JBXYJJ010000079.1 <> na Primary Assembly 33040 na Scaffold_170 unplaced-scaffold na na JBXYJJ010000080.1 <> na Primary Assembly 31613 na Scaffold_171 unplaced-scaffold na na JBXYJJ010000081.1 <> na Primary Assembly 30315 na Scaffold_172 unplaced-scaffold na na JBXYJJ010000082.1 <> na Primary Assembly 30194 na Scaffold_129 unplaced-scaffold na na JBXYJJ010000083.1 <> na Primary Assembly 29311 na Scaffold_174 unplaced-scaffold na na JBXYJJ010000084.1 <> na Primary Assembly 29204 na Scaffold_130 unplaced-scaffold na na JBXYJJ010000085.1 <> na Primary Assembly 27678 na Scaffold_167 unplaced-scaffold na na JBXYJJ010000086.1 <> na Primary Assembly 26844 na Scaffold_131 unplaced-scaffold na na JBXYJJ010000087.1 <> na Primary Assembly 24883 na Scaffold_178 unplaced-scaffold na na JBXYJJ010000088.1 <> na Primary Assembly 24319 na Scaffold_179 unplaced-scaffold na na JBXYJJ010000089.1 <> na Primary Assembly 23971 na Scaffold_132 unplaced-scaffold na na JBXYJJ010000090.1 <> na Primary Assembly 23510 na Scaffold_181 unplaced-scaffold na na JBXYJJ010000091.1 <> na Primary Assembly 20807 na Scaffold_182 unplaced-scaffold na na JBXYJJ010000092.1 <> na Primary Assembly 20750 na Scaffold_133 unplaced-scaffold na na JBXYJJ010000093.1 <> na Primary Assembly 13468 na ptg000016l_rotated assembled-molecule MT Mitochondrion CM174218.1 <> na non-nuclear 16806 na