# Assembly name: mRhiBla1.hap1 # Organism name: Rhinolophus blasii (Blasius's horseshoe bat) # Isolate: mRhiBla1 # Sex: male # Taxid: 519037 # BioSample: SAMN55323438 # BioProject: PRJNA1422839 # Submitter: Bat1K Project # Date: 2026-05-11 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBXXPW01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: No # Genome coverage: 34.78x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C # GenBank assembly accession: GCA_057428245.1 # Linked assembly: GCA_057428315.1 (haplotype 2) # ## Assembly-Unit names: ## Primary Assembly ## non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM171883.1 <> na Primary Assembly 110581129 na SUPER_2 assembled-molecule 2 Chromosome CM171884.1 <> na Primary Assembly 109451209 na SUPER_3 assembled-molecule 3 Chromosome CM171885.1 <> na Primary Assembly 108047871 na SUPER_4 assembled-molecule 4 Chromosome CM171886.1 <> na Primary Assembly 106949654 na SUPER_5 assembled-molecule 5 Chromosome CM171887.1 <> na Primary Assembly 102310536 na SUPER_6 assembled-molecule 6 Chromosome CM171888.1 <> na Primary Assembly 100861959 na SUPER_7 assembled-molecule 7 Chromosome CM171889.1 <> na Primary Assembly 100276270 na SUPER_8 assembled-molecule 8 Chromosome CM171890.1 <> na Primary Assembly 94687214 na SUPER_9 assembled-molecule 9 Chromosome CM171891.1 <> na Primary Assembly 92862849 na SUPER_10 assembled-molecule 10 Chromosome CM171892.1 <> na Primary Assembly 88727219 na SUPER_11 assembled-molecule 11 Chromosome CM171893.1 <> na Primary Assembly 84211506 na SUPER_12 assembled-molecule 12 Chromosome CM171894.1 <> na Primary Assembly 77760844 na SUPER_13 assembled-molecule 13 Chromosome CM171895.1 <> na Primary Assembly 73415793 na SUPER_14 assembled-molecule 14 Chromosome CM171896.1 <> na Primary Assembly 67958459 na SUPER_15 assembled-molecule 15 Chromosome CM171897.1 <> na Primary Assembly 67459077 na SUPER_16 assembled-molecule 16 Chromosome CM171898.1 <> na Primary Assembly 62854546 na SUPER_17 assembled-molecule 17 Chromosome CM171899.1 <> na Primary Assembly 60271766 na SUPER_18 assembled-molecule 18 Chromosome CM171900.1 <> na Primary Assembly 59463529 na SUPER_19 assembled-molecule 19 Chromosome CM171901.1 <> na Primary Assembly 54850575 na SUPER_20 assembled-molecule 20 Chromosome CM171902.1 <> na Primary Assembly 53594300 na SUPER_21 assembled-molecule 21 Chromosome CM171903.1 <> na Primary Assembly 51745023 na SUPER_22 assembled-molecule 22 Chromosome CM171904.1 <> na Primary Assembly 46033387 na SUPER_23 assembled-molecule 23 Chromosome CM171905.1 <> na Primary Assembly 44991037 na SUPER_24 assembled-molecule 24 Chromosome CM171906.1 <> na Primary Assembly 41203075 na SUPER_25 assembled-molecule 25 Chromosome CM171907.1 <> na Primary Assembly 30425044 na SUPER_26 assembled-molecule 26 Chromosome CM171908.1 <> na Primary Assembly 27983218 na SUPER_27 assembled-molecule 27 Chromosome CM171909.1 <> na Primary Assembly 19616265 na SUPER_28 assembled-molecule 28 Chromosome CM171910.1 <> na Primary Assembly 17934365 na SUPER_X assembled-molecule X Chromosome CM171911.1 <> na Primary Assembly 124914220 na SUPER_Y assembled-molecule Y Chromosome CM171912.1 <> na Primary Assembly 7700123 na SUPER_2_unloc_1 unlocalized-scaffold 2 Chromosome JBXXPW010000052.1 <> na Primary Assembly 432642 na SUPER_21_unloc_1 unlocalized-scaffold 21 Chromosome JBXXPW010000049.1 <> na Primary Assembly 491662 na SUPER_Y_unloc_16 unlocalized-scaffold Y Chromosome JBXXPW010000032.1 <> na Primary Assembly 2634037 na SUPER_Y_unloc_14 unlocalized-scaffold Y Chromosome JBXXPW010000033.1 <> na Primary Assembly 2126645 na SUPER_Y_unloc_12 unlocalized-scaffold Y Chromosome JBXXPW010000034.1 <> na Primary Assembly 1770999 na SUPER_Y_unloc_5 unlocalized-scaffold Y Chromosome JBXXPW010000035.1 <> na Primary Assembly 1738566 na SUPER_Y_unloc_4 unlocalized-scaffold Y Chromosome JBXXPW010000036.1 <> na Primary Assembly 1623659 na SUPER_Y_unloc_23 unlocalized-scaffold Y Chromosome JBXXPW010000037.1 <> na Primary Assembly 1565554 na SUPER_Y_unloc_22 unlocalized-scaffold Y Chromosome JBXXPW010000038.1 <> na Primary Assembly 1377272 na SUPER_Y_unloc_21 unlocalized-scaffold Y Chromosome JBXXPW010000039.1 <> na Primary Assembly 1323525 na SUPER_Y_unloc_20 unlocalized-scaffold Y Chromosome JBXXPW010000040.1 <> na Primary Assembly 933206 na SUPER_Y_unloc_19 unlocalized-scaffold Y Chromosome JBXXPW010000041.1 <> na Primary Assembly 793095 na SUPER_Y_unloc_18 unlocalized-scaffold Y Chromosome JBXXPW010000042.1 <> na Primary Assembly 746279 na SUPER_Y_unloc_17 unlocalized-scaffold Y Chromosome JBXXPW010000043.1 <> na Primary Assembly 678439 na SUPER_Y_unloc_15 unlocalized-scaffold Y Chromosome JBXXPW010000044.1 <> na Primary Assembly 602290 na SUPER_Y_unloc_11 unlocalized-scaffold Y Chromosome JBXXPW010000046.1 <> na Primary Assembly 584206 na SUPER_Y_unloc_10 unlocalized-scaffold Y Chromosome JBXXPW010000047.1 <> na Primary Assembly 578701 na SUPER_Y_unloc_9 unlocalized-scaffold Y Chromosome JBXXPW010000048.1 <> na Primary Assembly 514711 na SUPER_Y_unloc_8 unlocalized-scaffold Y Chromosome JBXXPW010000050.1 <> na Primary Assembly 485297 na SUPER_Y_unloc_7 unlocalized-scaffold Y Chromosome JBXXPW010000051.1 <> na Primary Assembly 435826 na SUPER_Y_unloc_6 unlocalized-scaffold Y Chromosome JBXXPW010000053.1 <> na Primary Assembly 406116 na SUPER_Y_unloc_13 unlocalized-scaffold Y Chromosome JBXXPW010000058.1 <> na Primary Assembly 363880 na SUPER_Y_unloc_24 unlocalized-scaffold Y Chromosome JBXXPW010000060.1 <> na Primary Assembly 348122 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JBXXPW010000069.1 <> na Primary Assembly 263322 na SUPER_Y_unloc_3 unlocalized-scaffold Y Chromosome JBXXPW010000071.1 <> na Primary Assembly 254106 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome JBXXPW010000072.1 <> na Primary Assembly 253792 na Scaffold_61 unplaced-scaffold na na JBXXPW010000045.1 <> na Primary Assembly 601950 na Scaffold_62 unplaced-scaffold na na JBXXPW010000054.1 <> na Primary Assembly 395100 na Scaffold_63 unplaced-scaffold na na JBXXPW010000055.1 <> na Primary Assembly 384705 na Scaffold_64 unplaced-scaffold na na JBXXPW010000056.1 <> na Primary Assembly 382779 na Scaffold_66 unplaced-scaffold na na JBXXPW010000057.1 <> na Primary Assembly 375693 na Scaffold_69 unplaced-scaffold na na JBXXPW010000059.1 <> na Primary Assembly 350468 na Scaffold_70 unplaced-scaffold na na JBXXPW010000061.1 <> na Primary Assembly 341602 na Scaffold_71 unplaced-scaffold na na JBXXPW010000062.1 <> na Primary Assembly 330221 na Scaffold_72 unplaced-scaffold na na JBXXPW010000063.1 <> na Primary Assembly 321102 na Scaffold_74 unplaced-scaffold na na JBXXPW010000064.1 <> na Primary Assembly 305049 na Scaffold_78 unplaced-scaffold na na JBXXPW010000065.1 <> na Primary Assembly 280454 na Scaffold_79 unplaced-scaffold na na JBXXPW010000066.1 <> na Primary Assembly 280057 na Scaffold_80 unplaced-scaffold na na JBXXPW010000067.1 <> na Primary Assembly 276898 na Scaffold_81 unplaced-scaffold na na JBXXPW010000068.1 <> na Primary Assembly 271454 na Scaffold_82 unplaced-scaffold na na JBXXPW010000070.1 <> na Primary Assembly 260243 na Scaffold_85 unplaced-scaffold na na JBXXPW010000073.1 <> na Primary Assembly 238481 na Scaffold_87 unplaced-scaffold na na JBXXPW010000074.1 <> na Primary Assembly 213130 na Scaffold_88 unplaced-scaffold na na JBXXPW010000075.1 <> na Primary Assembly 211581 na Scaffold_90 unplaced-scaffold na na JBXXPW010000076.1 <> na Primary Assembly 205415 na Scaffold_91 unplaced-scaffold na na JBXXPW010000077.1 <> na Primary Assembly 204242 na Scaffold_92 unplaced-scaffold na na JBXXPW010000078.1 <> na Primary Assembly 203108 na Scaffold_95 unplaced-scaffold na na JBXXPW010000079.1 <> na Primary Assembly 199332 na Scaffold_97 unplaced-scaffold na na JBXXPW010000080.1 <> na Primary Assembly 192715 na Scaffold_98 unplaced-scaffold na na JBXXPW010000081.1 <> na Primary Assembly 183878 na Scaffold_100 unplaced-scaffold na na JBXXPW010000082.1 <> na Primary Assembly 178423 na Scaffold_101 unplaced-scaffold na na JBXXPW010000083.1 <> na Primary Assembly 174390 na Scaffold_103 unplaced-scaffold na na JBXXPW010000084.1 <> na Primary Assembly 162898 na Scaffold_105 unplaced-scaffold na na JBXXPW010000085.1 <> na Primary Assembly 157119 na Scaffold_106 unplaced-scaffold na na JBXXPW010000086.1 <> na Primary Assembly 155315 na Scaffold_107 unplaced-scaffold na na JBXXPW010000087.1 <> na Primary Assembly 153517 na Scaffold_110 unplaced-scaffold na na JBXXPW010000088.1 <> na Primary Assembly 149574 na Scaffold_111 unplaced-scaffold na na JBXXPW010000089.1 <> na Primary Assembly 136305 na Scaffold_112 unplaced-scaffold na na JBXXPW010000090.1 <> na Primary Assembly 134931 na Scaffold_113 unplaced-scaffold na na JBXXPW010000091.1 <> na Primary Assembly 134343 na Scaffold_114 unplaced-scaffold na na JBXXPW010000092.1 <> na Primary Assembly 134204 na Scaffold_115 unplaced-scaffold na na JBXXPW010000093.1 <> na Primary Assembly 133800 na Scaffold_118 unplaced-scaffold na na JBXXPW010000094.1 <> na Primary Assembly 131013 na Scaffold_119 unplaced-scaffold na na JBXXPW010000095.1 <> na Primary Assembly 130569 na Scaffold_121 unplaced-scaffold na na JBXXPW010000096.1 <> na Primary Assembly 127243 na Scaffold_124 unplaced-scaffold na na JBXXPW010000097.1 <> na Primary Assembly 121591 na Scaffold_125 unplaced-scaffold na na JBXXPW010000098.1 <> na Primary Assembly 121257 na Scaffold_126 unplaced-scaffold na na JBXXPW010000099.1 <> na Primary Assembly 120212 na Scaffold_128 unplaced-scaffold na na JBXXPW010000100.1 <> na Primary Assembly 118115 na Scaffold_129 unplaced-scaffold na na JBXXPW010000101.1 <> na Primary Assembly 115579 na Scaffold_132 unplaced-scaffold na na JBXXPW010000102.1 <> na Primary Assembly 111438 na Scaffold_133 unplaced-scaffold na na JBXXPW010000103.1 <> na Primary Assembly 110814 na Scaffold_134 unplaced-scaffold na na JBXXPW010000104.1 <> na Primary Assembly 110473 na Scaffold_135 unplaced-scaffold na na JBXXPW010000105.1 <> na Primary Assembly 110321 na Scaffold_136 unplaced-scaffold na na JBXXPW010000106.1 <> na Primary Assembly 107316 na Scaffold_139 unplaced-scaffold na na JBXXPW010000107.1 <> na Primary Assembly 105633 na Scaffold_308 unplaced-scaffold na na JBXXPW010000108.1 <> na Primary Assembly 103999 na Scaffold_144 unplaced-scaffold na na JBXXPW010000109.1 <> na Primary Assembly 103206 na Scaffold_145 unplaced-scaffold na na JBXXPW010000110.1 <> na Primary Assembly 100277 na Scaffold_146 unplaced-scaffold na na JBXXPW010000111.1 <> na Primary Assembly 100230 na Scaffold_147 unplaced-scaffold na na JBXXPW010000112.1 <> na Primary Assembly 99214 na Scaffold_148 unplaced-scaffold na na JBXXPW010000113.1 <> na Primary Assembly 97111 na Scaffold_149 unplaced-scaffold na na JBXXPW010000114.1 <> na Primary Assembly 96924 na Scaffold_315 unplaced-scaffold na na JBXXPW010000115.1 <> na Primary Assembly 93058 na Scaffold_151 unplaced-scaffold na na JBXXPW010000116.1 <> na Primary Assembly 92239 na Scaffold_152 unplaced-scaffold na na JBXXPW010000117.1 <> na Primary Assembly 92180 na Scaffold_318 unplaced-scaffold na na JBXXPW010000118.1 <> na Primary Assembly 91328 na Scaffold_153 unplaced-scaffold na na JBXXPW010000119.1 <> na Primary Assembly 91259 na Scaffold_154 unplaced-scaffold na na JBXXPW010000120.1 <> na Primary Assembly 89576 na Scaffold_156 unplaced-scaffold na na JBXXPW010000121.1 <> na Primary Assembly 88174 na Scaffold_322 unplaced-scaffold na na JBXXPW010000122.1 <> na Primary Assembly 85665 na Scaffold_159 unplaced-scaffold na na JBXXPW010000123.1 <> na Primary Assembly 84175 na Scaffold_160 unplaced-scaffold na na JBXXPW010000124.1 <> na Primary Assembly 83192 na Scaffold_161 unplaced-scaffold na na JBXXPW010000125.1 <> na Primary Assembly 82509 na Scaffold_326 unplaced-scaffold na na JBXXPW010000126.1 <> na Primary Assembly 80223 na Scaffold_162 unplaced-scaffold na na JBXXPW010000127.1 <> na Primary Assembly 80028 na Scaffold_164 unplaced-scaffold na na JBXXPW010000128.1 <> na Primary Assembly 78220 na Scaffold_165 unplaced-scaffold na na JBXXPW010000129.1 <> na Primary Assembly 78001 na Scaffold_166 unplaced-scaffold na na JBXXPW010000130.1 <> na Primary Assembly 76427 na Scaffold_331 unplaced-scaffold na na JBXXPW010000131.1 <> na Primary Assembly 76358 na Scaffold_167 unplaced-scaffold na na JBXXPW010000132.1 <> na Primary Assembly 74533 na Scaffold_169 unplaced-scaffold na na JBXXPW010000133.1 <> na Primary Assembly 68742 na Scaffold_334 unplaced-scaffold na na JBXXPW010000134.1 <> na Primary Assembly 68528 na Scaffold_335 unplaced-scaffold na na JBXXPW010000135.1 <> na Primary Assembly 66538 na Scaffold_336 unplaced-scaffold na na JBXXPW010000136.1 <> na Primary Assembly 64036 na Scaffold_172 unplaced-scaffold na na JBXXPW010000137.1 <> na Primary Assembly 63617 na Scaffold_173 unplaced-scaffold na na JBXXPW010000138.1 <> na Primary Assembly 62932 na Scaffold_339 unplaced-scaffold na na JBXXPW010000139.1 <> na Primary Assembly 59903 na Scaffold_176 unplaced-scaffold na na JBXXPW010000140.1 <> na Primary Assembly 59146 na Scaffold_179 unplaced-scaffold na na JBXXPW010000141.1 <> na Primary Assembly 56065 na Scaffold_342 unplaced-scaffold na na JBXXPW010000142.1 <> na Primary Assembly 55807 na Scaffold_343 unplaced-scaffold na na JBXXPW010000143.1 <> na Primary Assembly 55468 na Scaffold_180 unplaced-scaffold na na JBXXPW010000144.1 <> na Primary Assembly 55292 na Scaffold_345 unplaced-scaffold na na JBXXPW010000145.1 <> na Primary Assembly 55285 na Scaffold_181 unplaced-scaffold na na JBXXPW010000146.1 <> na Primary Assembly 55165 na Scaffold_182 unplaced-scaffold na na JBXXPW010000147.1 <> na Primary Assembly 54618 na Scaffold_348 unplaced-scaffold na na JBXXPW010000148.1 <> na Primary Assembly 54329 na Scaffold_349 unplaced-scaffold na na JBXXPW010000149.1 <> na Primary Assembly 52198 na Scaffold_185 unplaced-scaffold na na JBXXPW010000150.1 <> na Primary Assembly 52078 na Scaffold_351 unplaced-scaffold na na JBXXPW010000151.1 <> na Primary Assembly 51483 na Scaffold_186 unplaced-scaffold na na JBXXPW010000152.1 <> na Primary Assembly 50813 na Scaffold_353 unplaced-scaffold na na JBXXPW010000153.1 <> na Primary Assembly 48809 na Scaffold_354 unplaced-scaffold na na JBXXPW010000154.1 <> na Primary Assembly 48102 na Scaffold_189 unplaced-scaffold na na JBXXPW010000155.1 <> na Primary Assembly 47401 na Scaffold_356 unplaced-scaffold na na JBXXPW010000156.1 <> na Primary Assembly 47359 na Scaffold_357 unplaced-scaffold na na JBXXPW010000157.1 <> na Primary Assembly 45288 na Scaffold_191 unplaced-scaffold na na JBXXPW010000158.1 <> na Primary Assembly 45275 na Scaffold_359 unplaced-scaffold na na JBXXPW010000159.1 <> na Primary Assembly 45095 na Scaffold_360 unplaced-scaffold na na JBXXPW010000160.1 <> na Primary Assembly 44504 na Scaffold_361 unplaced-scaffold na na JBXXPW010000161.1 <> na Primary Assembly 44238 na Scaffold_193 unplaced-scaffold na na JBXXPW010000162.1 <> na Primary Assembly 44108 na Scaffold_194 unplaced-scaffold na na JBXXPW010000163.1 <> na Primary Assembly 43637 na Scaffold_364 unplaced-scaffold na na JBXXPW010000164.1 <> na Primary Assembly 43388 na Scaffold_365 unplaced-scaffold na na JBXXPW010000165.1 <> na Primary Assembly 41928 na Scaffold_366 unplaced-scaffold na na JBXXPW010000166.1 <> na Primary Assembly 41796 na Scaffold_196 unplaced-scaffold na na JBXXPW010000167.1 <> na Primary Assembly 41276 na Scaffold_197 unplaced-scaffold na na JBXXPW010000168.1 <> na Primary Assembly 40670 na Scaffold_198 unplaced-scaffold na na JBXXPW010000169.1 <> na Primary Assembly 40293 na Scaffold_370 unplaced-scaffold na na JBXXPW010000170.1 <> na Primary Assembly 38848 na Scaffold_199 unplaced-scaffold na na JBXXPW010000171.1 <> na Primary Assembly 38629 na Scaffold_372 unplaced-scaffold na na JBXXPW010000172.1 <> na Primary Assembly 37299 na Scaffold_373 unplaced-scaffold na na JBXXPW010000173.1 <> na Primary Assembly 36606 na Scaffold_374 unplaced-scaffold na na JBXXPW010000174.1 <> na Primary Assembly 36441 na Scaffold_375 unplaced-scaffold na na JBXXPW010000175.1 <> na Primary Assembly 36123 na Scaffold_376 unplaced-scaffold na na JBXXPW010000176.1 <> na Primary Assembly 36054 na Scaffold_377 unplaced-scaffold na na JBXXPW010000177.1 <> na Primary Assembly 35904 na Scaffold_202 unplaced-scaffold na na JBXXPW010000178.1 <> na Primary Assembly 35408 na Scaffold_203 unplaced-scaffold na na JBXXPW010000179.1 <> na Primary Assembly 33795 na Scaffold_380 unplaced-scaffold na na JBXXPW010000180.1 <> na Primary Assembly 33773 na Scaffold_381 unplaced-scaffold na na JBXXPW010000181.1 <> na Primary Assembly 33209 na Scaffold_382 unplaced-scaffold na na JBXXPW010000182.1 <> na Primary Assembly 32145 na Scaffold_383 unplaced-scaffold na na JBXXPW010000183.1 <> na Primary Assembly 32044 na Scaffold_205 unplaced-scaffold na na JBXXPW010000184.1 <> na Primary Assembly 31636 na Scaffold_206 unplaced-scaffold na na JBXXPW010000185.1 <> na Primary Assembly 31077 na Scaffold_386 unplaced-scaffold na na JBXXPW010000186.1 <> na Primary Assembly 30564 na Scaffold_387 unplaced-scaffold na na JBXXPW010000187.1 <> na Primary Assembly 30445 na Scaffold_207 unplaced-scaffold na na JBXXPW010000188.1 <> na Primary Assembly 29815 na Scaffold_389 unplaced-scaffold na na JBXXPW010000189.1 <> na Primary Assembly 29234 na Scaffold_209 unplaced-scaffold na na JBXXPW010000190.1 <> na Primary Assembly 27629 na Scaffold_391 unplaced-scaffold na na JBXXPW010000191.1 <> na Primary Assembly 27588 na Scaffold_392 unplaced-scaffold na na JBXXPW010000192.1 <> na Primary Assembly 27564 na Scaffold_210 unplaced-scaffold na na JBXXPW010000193.1 <> na Primary Assembly 26811 na Scaffold_394 unplaced-scaffold na na JBXXPW010000194.1 <> na Primary Assembly 23857 na Scaffold_212 unplaced-scaffold na na JBXXPW010000195.1 <> na Primary Assembly 23431 na Scaffold_396 unplaced-scaffold na na JBXXPW010000196.1 <> na Primary Assembly 23187 na Scaffold_397 unplaced-scaffold na na JBXXPW010000197.1 <> na Primary Assembly 20264 na atg000035l_rc_rotated assembled-molecule MT Mitochondrion CM171913.1 <> na non-nuclear 16851 na