# Assembly name: mMyoTri1.hap1 # Organism name: Myotis tricolor (Cape hairy bat) # Isolate: mMyoTri1 # Sex: male # Taxid: 233765 # BioSample: SAMN54208108 # BioProject: PRJNA1390882 # Submitter: Bat1K Project # Date: 2026-01-29 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBTBEZ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.8 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: No # Genome coverage: 47.75x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_054824995.1 # Linked assembly: GCA_054825045.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_054825005.1 Primary Assembly ## GCA_054825015.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM139618.1 <> na Primary Assembly 233850034 na SUPER_2 assembled-molecule 2 Chromosome CM139619.1 <> na Primary Assembly 221633719 na SUPER_3 assembled-molecule 3 Chromosome CM139620.1 <> na Primary Assembly 217590608 na SUPER_4 assembled-molecule 4 Chromosome CM139621.1 <> na Primary Assembly 115732280 na SUPER_5 assembled-molecule 5 Chromosome CM139622.1 <> na Primary Assembly 109915084 na SUPER_6 assembled-molecule 6 Chromosome CM139623.1 <> na Primary Assembly 101392957 na SUPER_7 assembled-molecule 7 Chromosome CM139624.1 <> na Primary Assembly 94355063 na SUPER_8 assembled-molecule 8 Chromosome CM139625.1 <> na Primary Assembly 92730002 na SUPER_9 assembled-molecule 9 Chromosome CM139626.1 <> na Primary Assembly 84369875 na SUPER_10 assembled-molecule 10 Chromosome CM139627.1 <> na Primary Assembly 81769735 na SUPER_11 assembled-molecule 11 Chromosome CM139628.1 <> na Primary Assembly 79895455 na SUPER_12 assembled-molecule 12 Chromosome CM139629.1 <> na Primary Assembly 66733015 na SUPER_13 assembled-molecule 13 Chromosome CM139630.1 <> na Primary Assembly 64240391 na SUPER_14 assembled-molecule 14 Chromosome CM139631.1 <> na Primary Assembly 58186910 na SUPER_15 assembled-molecule 15 Chromosome CM139632.1 <> na Primary Assembly 57080117 na SUPER_16 assembled-molecule 16 Chromosome CM139633.1 <> na Primary Assembly 56288102 na SUPER_17 assembled-molecule 17 Chromosome CM139634.1 <> na Primary Assembly 51939039 na SUPER_18 assembled-molecule 18 Chromosome CM139635.1 <> na Primary Assembly 44454860 na SUPER_19 assembled-molecule 19 Chromosome CM139636.1 <> na Primary Assembly 30299576 na SUPER_20 assembled-molecule 20 Chromosome CM139637.1 <> na Primary Assembly 18762667 na SUPER_21 assembled-molecule 21 Chromosome CM139638.1 <> na Primary Assembly 18212455 na SUPER_X assembled-molecule X Chromosome CM139639.1 <> na Primary Assembly 130694680 na SUPER_Y assembled-molecule Y Chromosome CM139640.1 <> na Primary Assembly 15716088 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JBTBEZ010000063.1 <> na Primary Assembly 896395 na SUPER_1_unloc_3 unlocalized-scaffold 1 Chromosome JBTBEZ010000072.1 <> na Primary Assembly 667799 na SUPER_1_unloc_2 unlocalized-scaffold 1 Chromosome JBTBEZ010000081.1 <> na Primary Assembly 517661 na SUPER_16_unloc_1 unlocalized-scaffold 16 Chromosome JBTBEZ010000046.1 <> na Primary Assembly 1493409 na SUPER_16_unloc_2 unlocalized-scaffold 16 Chromosome JBTBEZ010000115.1 <> na Primary Assembly 216827 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JBTBEZ010000053.1 <> na Primary Assembly 1268545 na SUPER_18_unloc_2 unlocalized-scaffold 18 Chromosome JBTBEZ010000074.1 <> na Primary Assembly 646053 na SUPER_21_unloc_1 unlocalized-scaffold 21 Chromosome JBTBEZ010000034.1 <> na Primary Assembly 2174133 na SUPER_X_unloc_2 unlocalized-scaffold X Chromosome JBTBEZ010000041.1 <> na Primary Assembly 1756396 na SUPER_X_unloc_1 unlocalized-scaffold X Chromosome JBTBEZ010000093.1 <> na Primary Assembly 360811 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JBTBEZ010000025.1 <> na Primary Assembly 3653143 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome JBTBEZ010000035.1 <> na Primary Assembly 2172356 na SUPER_Y_unloc_9 unlocalized-scaffold Y Chromosome JBTBEZ010000077.1 <> na Primary Assembly 593445 na SUPER_Y_unloc_7 unlocalized-scaffold Y Chromosome JBTBEZ010000084.1 <> na Primary Assembly 486539 na SUPER_Y_unloc_5 unlocalized-scaffold Y Chromosome JBTBEZ010000102.1 <> na Primary Assembly 283679 na SUPER_Y_unloc_6 unlocalized-scaffold Y Chromosome JBTBEZ010000105.1 <> na Primary Assembly 263727 na SUPER_Y_unloc_8 unlocalized-scaffold Y Chromosome JBTBEZ010000111.1 <> na Primary Assembly 240193 na SUPER_Y_unloc_3 unlocalized-scaffold Y Chromosome JBTBEZ010000136.1 <> na Primary Assembly 95612 na SUPER_Y_unloc_4 unlocalized-scaffold Y Chromosome JBTBEZ010000137.1 <> na Primary Assembly 88932 na Scaffold_50 unplaced-scaffold na na JBTBEZ010000026.1 <> na Primary Assembly 3564399 na Scaffold_51 unplaced-scaffold na na JBTBEZ010000027.1 <> na Primary Assembly 3274779 na Scaffold_52 unplaced-scaffold na na JBTBEZ010000028.1 <> na Primary Assembly 3096047 na Scaffold_53 unplaced-scaffold na na JBTBEZ010000029.1 <> na Primary Assembly 2741975 na Scaffold_56 unplaced-scaffold na na JBTBEZ010000030.1 <> na Primary Assembly 2426578 na Scaffold_57 unplaced-scaffold na na JBTBEZ010000031.1 <> na Primary Assembly 2416313 na Scaffold_58 unplaced-scaffold na na JBTBEZ010000032.1 <> na Primary Assembly 2302200 na Scaffold_45 unplaced-scaffold na na JBTBEZ010000033.1 <> na Primary Assembly 2291123 na Scaffold_60 unplaced-scaffold na na JBTBEZ010000036.1 <> na Primary Assembly 2161634 na Scaffold_62 unplaced-scaffold na na JBTBEZ010000037.1 <> na Primary Assembly 2021162 na Scaffold_63 unplaced-scaffold na na JBTBEZ010000038.1 <> na Primary Assembly 2020224 na Scaffold_64 unplaced-scaffold na na JBTBEZ010000039.1 <> na Primary Assembly 1908166 na Scaffold_65 unplaced-scaffold na na JBTBEZ010000040.1 <> na Primary Assembly 1811889 na Scaffold_66 unplaced-scaffold na na JBTBEZ010000042.1 <> na Primary Assembly 1723854 na Scaffold_67 unplaced-scaffold na na JBTBEZ010000043.1 <> na Primary Assembly 1704805 na Scaffold_69 unplaced-scaffold na na JBTBEZ010000044.1 <> na Primary Assembly 1606235 na Scaffold_70 unplaced-scaffold na na JBTBEZ010000045.1 <> na Primary Assembly 1525342 na Scaffold_72 unplaced-scaffold na na JBTBEZ010000047.1 <> na Primary Assembly 1432277 na Scaffold_73 unplaced-scaffold na na JBTBEZ010000048.1 <> na Primary Assembly 1425567 na Scaffold_74 unplaced-scaffold na na JBTBEZ010000049.1 <> na Primary Assembly 1413880 na Scaffold_76 unplaced-scaffold na na JBTBEZ010000050.1 <> na Primary Assembly 1401055 na Scaffold_77 unplaced-scaffold na na JBTBEZ010000051.1 <> na Primary Assembly 1369312 na Scaffold_78 unplaced-scaffold na na JBTBEZ010000052.1 <> na Primary Assembly 1271824 na Scaffold_79 unplaced-scaffold na na JBTBEZ010000054.1 <> na Primary Assembly 1240494 na Scaffold_80 unplaced-scaffold na na JBTBEZ010000055.1 <> na Primary Assembly 1214105 na Scaffold_81 unplaced-scaffold na na JBTBEZ010000056.1 <> na Primary Assembly 1205342 na Scaffold_83 unplaced-scaffold na na JBTBEZ010000057.1 <> na Primary Assembly 1162593 na Scaffold_84 unplaced-scaffold na na JBTBEZ010000058.1 <> na Primary Assembly 1121855 na Scaffold_85 unplaced-scaffold na na JBTBEZ010000059.1 <> na Primary Assembly 1116667 na Scaffold_86 unplaced-scaffold na na JBTBEZ010000060.1 <> na Primary Assembly 1023785 na Scaffold_87 unplaced-scaffold na na JBTBEZ010000061.1 <> na Primary Assembly 946236 na Scaffold_89 unplaced-scaffold na na JBTBEZ010000062.1 <> na Primary Assembly 914974 na Scaffold_90 unplaced-scaffold na na JBTBEZ010000064.1 <> na Primary Assembly 869818 na Scaffold_91 unplaced-scaffold na na JBTBEZ010000065.1 <> na Primary Assembly 856161 na Scaffold_95 unplaced-scaffold na na JBTBEZ010000066.1 <> na Primary Assembly 808924 na Scaffold_96 unplaced-scaffold na na JBTBEZ010000067.1 <> na Primary Assembly 807261 na Scaffold_97 unplaced-scaffold na na JBTBEZ010000068.1 <> na Primary Assembly 801951 na Scaffold_99 unplaced-scaffold na na JBTBEZ010000069.1 <> na Primary Assembly 761272 na Scaffold_100 unplaced-scaffold na na JBTBEZ010000070.1 <> na Primary Assembly 752911 na Scaffold_102 unplaced-scaffold na na JBTBEZ010000071.1 <> na Primary Assembly 684963 na Scaffold_104 unplaced-scaffold na na JBTBEZ010000073.1 <> na Primary Assembly 653298 na Scaffold_106 unplaced-scaffold na na JBTBEZ010000075.1 <> na Primary Assembly 621926 na Scaffold_108 unplaced-scaffold na na JBTBEZ010000076.1 <> na Primary Assembly 614284 na Scaffold_109 unplaced-scaffold na na JBTBEZ010000078.1 <> na Primary Assembly 591542 na Scaffold_47 unplaced-scaffold na na JBTBEZ010000079.1 <> na Primary Assembly 549676 na Scaffold_111 unplaced-scaffold na na JBTBEZ010000080.1 <> na Primary Assembly 519531 na Scaffold_112 unplaced-scaffold na na JBTBEZ010000082.1 <> na Primary Assembly 510251 na Scaffold_113 unplaced-scaffold na na JBTBEZ010000083.1 <> na Primary Assembly 495120 na Scaffold_114 unplaced-scaffold na na JBTBEZ010000085.1 <> na Primary Assembly 483151 na Scaffold_115 unplaced-scaffold na na JBTBEZ010000086.1 <> na Primary Assembly 481713 na Scaffold_117 unplaced-scaffold na na JBTBEZ010000087.1 <> na Primary Assembly 471809 na Scaffold_119 unplaced-scaffold na na JBTBEZ010000088.1 <> na Primary Assembly 449621 na Scaffold_121 unplaced-scaffold na na JBTBEZ010000089.1 <> na Primary Assembly 447696 na Scaffold_125 unplaced-scaffold na na JBTBEZ010000090.1 <> na Primary Assembly 435963 na Scaffold_127 unplaced-scaffold na na JBTBEZ010000091.1 <> na Primary Assembly 401785 na Scaffold_128 unplaced-scaffold na na JBTBEZ010000092.1 <> na Primary Assembly 386313 na Scaffold_129 unplaced-scaffold na na JBTBEZ010000094.1 <> na Primary Assembly 356193 na Scaffold_130 unplaced-scaffold na na JBTBEZ010000095.1 <> na Primary Assembly 352664 na Scaffold_131 unplaced-scaffold na na JBTBEZ010000096.1 <> na Primary Assembly 338507 na Scaffold_133 unplaced-scaffold na na JBTBEZ010000097.1 <> na Primary Assembly 316000 na Scaffold_135 unplaced-scaffold na na JBTBEZ010000098.1 <> na Primary Assembly 310236 na Scaffold_136 unplaced-scaffold na na JBTBEZ010000099.1 <> na Primary Assembly 310053 na Scaffold_137 unplaced-scaffold na na JBTBEZ010000100.1 <> na Primary Assembly 298282 na Scaffold_139 unplaced-scaffold na na JBTBEZ010000101.1 <> na Primary Assembly 288369 na Scaffold_140 unplaced-scaffold na na JBTBEZ010000103.1 <> na Primary Assembly 282476 na Scaffold_141 unplaced-scaffold na na JBTBEZ010000104.1 <> na Primary Assembly 279972 na Scaffold_146 unplaced-scaffold na na JBTBEZ010000106.1 <> na Primary Assembly 258514 na Scaffold_147 unplaced-scaffold na na JBTBEZ010000107.1 <> na Primary Assembly 258094 na Scaffold_148 unplaced-scaffold na na JBTBEZ010000108.1 <> na Primary Assembly 255256 na Scaffold_149 unplaced-scaffold na na JBTBEZ010000109.1 <> na Primary Assembly 253504 na Scaffold_151 unplaced-scaffold na na JBTBEZ010000110.1 <> na Primary Assembly 247315 na Scaffold_152 unplaced-scaffold na na JBTBEZ010000112.1 <> na Primary Assembly 235921 na Scaffold_153 unplaced-scaffold na na JBTBEZ010000113.1 <> na Primary Assembly 235377 na Scaffold_154 unplaced-scaffold na na JBTBEZ010000114.1 <> na Primary Assembly 231555 na Scaffold_157 unplaced-scaffold na na JBTBEZ010000116.1 <> na Primary Assembly 215613 na Scaffold_158 unplaced-scaffold na na JBTBEZ010000117.1 <> na Primary Assembly 214716 na Scaffold_159 unplaced-scaffold na na JBTBEZ010000118.1 <> na Primary Assembly 199616 na Scaffold_160 unplaced-scaffold na na JBTBEZ010000119.1 <> na Primary Assembly 199600 na Scaffold_161 unplaced-scaffold na na JBTBEZ010000120.1 <> na Primary Assembly 183268 na Scaffold_163 unplaced-scaffold na na JBTBEZ010000121.1 <> na Primary Assembly 177670 na Scaffold_166 unplaced-scaffold na na JBTBEZ010000122.1 <> na Primary Assembly 149233 na Scaffold_168 unplaced-scaffold na na JBTBEZ010000123.1 <> na Primary Assembly 147603 na Scaffold_173 unplaced-scaffold na na JBTBEZ010000124.1 <> na Primary Assembly 133651 na Scaffold_174 unplaced-scaffold na na JBTBEZ010000125.1 <> na Primary Assembly 131033 na Scaffold_175 unplaced-scaffold na na JBTBEZ010000126.1 <> na Primary Assembly 130249 na Scaffold_176 unplaced-scaffold na na JBTBEZ010000127.1 <> na Primary Assembly 129828 na Scaffold_177 unplaced-scaffold na na JBTBEZ010000128.1 <> na Primary Assembly 127505 na Scaffold_178 unplaced-scaffold na na JBTBEZ010000129.1 <> na Primary Assembly 124173 na Scaffold_179 unplaced-scaffold na na JBTBEZ010000130.1 <> na Primary Assembly 120548 na Scaffold_180 unplaced-scaffold na na JBTBEZ010000131.1 <> na Primary Assembly 116602 na Scaffold_181 unplaced-scaffold na na JBTBEZ010000132.1 <> na Primary Assembly 116150 na Scaffold_184 unplaced-scaffold na na JBTBEZ010000133.1 <> na Primary Assembly 105807 na Scaffold_346 unplaced-scaffold na na JBTBEZ010000134.1 <> na Primary Assembly 100484 na Scaffold_48 unplaced-scaffold na na JBTBEZ010000135.1 <> na Primary Assembly 95689 na Scaffold_350 unplaced-scaffold na na JBTBEZ010000138.1 <> na Primary Assembly 87845 na Scaffold_189 unplaced-scaffold na na JBTBEZ010000139.1 <> na Primary Assembly 85296 na Scaffold_190 unplaced-scaffold na na JBTBEZ010000140.1 <> na Primary Assembly 81993 na Scaffold_193 unplaced-scaffold na na JBTBEZ010000141.1 <> na Primary Assembly 68238 na Scaffold_354 unplaced-scaffold na na JBTBEZ010000142.1 <> na Primary Assembly 67983 na Scaffold_194 unplaced-scaffold na na JBTBEZ010000143.1 <> na Primary Assembly 67665 na Scaffold_195 unplaced-scaffold na na JBTBEZ010000144.1 <> na Primary Assembly 66455 na Scaffold_196 unplaced-scaffold na na JBTBEZ010000145.1 <> na Primary Assembly 65837 na Scaffold_46 unplaced-scaffold na na JBTBEZ010000146.1 <> na Primary Assembly 58727 na Scaffold_359 unplaced-scaffold na na JBTBEZ010000147.1 <> na Primary Assembly 58138 na Scaffold_360 unplaced-scaffold na na JBTBEZ010000148.1 <> na Primary Assembly 49549 na Scaffold_200 unplaced-scaffold na na JBTBEZ010000149.1 <> na Primary Assembly 49548 na Scaffold_201 unplaced-scaffold na na JBTBEZ010000150.1 <> na Primary Assembly 45981 na Scaffold_363 unplaced-scaffold na na JBTBEZ010000151.1 <> na Primary Assembly 44151 na Scaffold_202 unplaced-scaffold na na JBTBEZ010000152.1 <> na Primary Assembly 43716 na Scaffold_203 unplaced-scaffold na na JBTBEZ010000153.1 <> na Primary Assembly 40875 na Scaffold_204 unplaced-scaffold na na JBTBEZ010000154.1 <> na Primary Assembly 39350 na Scaffold_367 unplaced-scaffold na na JBTBEZ010000155.1 <> na Primary Assembly 38733 na Scaffold_205 unplaced-scaffold na na JBTBEZ010000156.1 <> na Primary Assembly 38362 na Scaffold_369 unplaced-scaffold na na JBTBEZ010000157.1 <> na Primary Assembly 38089 na Scaffold_370 unplaced-scaffold na na JBTBEZ010000158.1 <> na Primary Assembly 36523 na Scaffold_371 unplaced-scaffold na na JBTBEZ010000159.1 <> na Primary Assembly 33584 na Scaffold_207 unplaced-scaffold na na JBTBEZ010000160.1 <> na Primary Assembly 32783 na Scaffold_373 unplaced-scaffold na na JBTBEZ010000161.1 <> na Primary Assembly 31032 na Scaffold_374 unplaced-scaffold na na JBTBEZ010000162.1 <> na Primary Assembly 30208 na Scaffold_375 unplaced-scaffold na na JBTBEZ010000163.1 <> na Primary Assembly 29870 na Scaffold_376 unplaced-scaffold na na JBTBEZ010000164.1 <> na Primary Assembly 28968 na Scaffold_377 unplaced-scaffold na na JBTBEZ010000165.1 <> na Primary Assembly 27036 na Scaffold_210 unplaced-scaffold na na JBTBEZ010000166.1 <> na Primary Assembly 26351 na Scaffold_379 unplaced-scaffold na na JBTBEZ010000167.1 <> na Primary Assembly 26173 na Scaffold_380 unplaced-scaffold na na JBTBEZ010000168.1 <> na Primary Assembly 25921 na Scaffold_381 unplaced-scaffold na na JBTBEZ010000169.1 <> na Primary Assembly 25457 na Scaffold_211 unplaced-scaffold na na JBTBEZ010000170.1 <> na Primary Assembly 25153 na Scaffold_383 unplaced-scaffold na na JBTBEZ010000171.1 <> na Primary Assembly 24765 na Scaffold_384 unplaced-scaffold na na JBTBEZ010000172.1 <> na Primary Assembly 24535 na Scaffold_385 unplaced-scaffold na na JBTBEZ010000173.1 <> na Primary Assembly 24059 na Scaffold_387 unplaced-scaffold na na JBTBEZ010000174.1 <> na Primary Assembly 23558 na Scaffold_388 unplaced-scaffold na na JBTBEZ010000175.1 <> na Primary Assembly 23531 na Scaffold_389 unplaced-scaffold na na JBTBEZ010000176.1 <> na Primary Assembly 23303 na Scaffold_213 unplaced-scaffold na na JBTBEZ010000177.1 <> na Primary Assembly 22676 na Scaffold_391 unplaced-scaffold na na JBTBEZ010000178.1 <> na Primary Assembly 20423 na Scaffold_392 unplaced-scaffold na na JBTBEZ010000179.1 <> na Primary Assembly 19536 na Scaffold_214 unplaced-scaffold na na JBTBEZ010000180.1 <> na Primary Assembly 19536 na Scaffold_394 unplaced-scaffold na na JBTBEZ010000181.1 <> na Primary Assembly 19465 na Scaffold_395 unplaced-scaffold na na JBTBEZ010000182.1 <> na Primary Assembly 19163 na Scaffold_396 unplaced-scaffold na na JBTBEZ010000183.1 <> na Primary Assembly 18180 na Scaffold_397 unplaced-scaffold na na JBTBEZ010000184.1 <> na Primary Assembly 17999 na Scaffold_398 unplaced-scaffold na na JBTBEZ010000185.1 <> na Primary Assembly 17531 na Scaffold_215 unplaced-scaffold na na JBTBEZ010000186.1 <> na Primary Assembly 17344 na Scaffold_400 unplaced-scaffold na na JBTBEZ010000187.1 <> na Primary Assembly 16821 na Scaffold_401 unplaced-scaffold na na JBTBEZ010000188.1 <> na Primary Assembly 16719 na Scaffold_216 unplaced-scaffold na na JBTBEZ010000189.1 <> na Primary Assembly 12983 na ptg000020l_rotated assembled-molecule MT Mitochondrion CM139641.1 <> na non-nuclear 17232 na