# Assembly name: Cmac_hap2.fasta # Organism name: Cochliomyia macellaria (secondary screw-worm) # Isolate: Kerr-NC-F1 # Sex: male # Taxid: 66361 # BioSample: SAMN47485997 # BioProject: PRJNA1254290 # Submitter: USDA-Agricultural Research Service, USA # Date: 2025-09-12 # Assembly type: alternate-pseudohaplotype # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBOJLP01 # Assembly method: Hifiasm v. 0.19.8 # Expected final version: yes # Genome coverage: 57x # Sequencing technology: PacBio Sequel IIe # GenBank assembly accession: GCA_052576165.1 # Linked assembly: GCA_052576185.1 (principal pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_052576175.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome1 assembled-molecule 1 Chromosome CM127252.1 <> na Primary Assembly 114144749 na Chromosome2 assembled-molecule 2 Chromosome CM127253.1 <> na Primary Assembly 103714399 na Chromosome3 assembled-molecule 3 Chromosome CM127254.1 <> na Primary Assembly 104664252 na Chromosome4 assembled-molecule 4 Chromosome CM127255.1 <> na Primary Assembly 75828113 na Chromosome5 assembled-molecule 5 Chromosome CM127256.1 <> na Primary Assembly 90149681 na ctg00000075.1 unplaced-scaffold na na JBOJLP010000006.1 <> na Primary Assembly 1199628 na ctg00000081.1 unplaced-scaffold na na JBOJLP010000007.1 <> na Primary Assembly 666917 na ctg00000082.1 unplaced-scaffold na na JBOJLP010000008.1 <> na Primary Assembly 549520 na ctg00000084.1 unplaced-scaffold na na JBOJLP010000009.1 <> na Primary Assembly 326551 na ctg00000087.1 unplaced-scaffold na na JBOJLP010000010.1 <> na Primary Assembly 258982 na ctg00000088.1 unplaced-scaffold na na JBOJLP010000011.1 <> na Primary Assembly 170797 na ctg00000090.1 unplaced-scaffold na na JBOJLP010000012.1 <> na Primary Assembly 151964 na ctg00000093.1 unplaced-scaffold na na JBOJLP010000013.1 <> na Primary Assembly 115016 na ctg00000095.1 unplaced-scaffold na na JBOJLP010000014.1 <> na Primary Assembly 97079 na ctg00000096.1 unplaced-scaffold na na JBOJLP010000015.1 <> na Primary Assembly 95687 na ctg00000097.1 unplaced-scaffold na na JBOJLP010000016.1 <> na Primary Assembly 93253 na ctg00000098.1 unplaced-scaffold na na JBOJLP010000017.1 <> na Primary Assembly 82151 na ctg00000100.1 unplaced-scaffold na na JBOJLP010000018.1 <> na Primary Assembly 75463 na ctg00000101.1 unplaced-scaffold na na JBOJLP010000019.1 <> na Primary Assembly 74672 na ctg00000102.1 unplaced-scaffold na na JBOJLP010000020.1 <> na Primary Assembly 74431 na ctg00000103.1 unplaced-scaffold na na JBOJLP010000021.1 <> na Primary Assembly 74136 na ctg00000106.1 unplaced-scaffold na na JBOJLP010000022.1 <> na Primary Assembly 68849 na ctg00000109.1 unplaced-scaffold na na JBOJLP010000023.1 <> na Primary Assembly 65598 na ctg00000110.1 unplaced-scaffold na na JBOJLP010000024.1 <> na Primary Assembly 64670 na ctg00000111.1 unplaced-scaffold na na JBOJLP010000025.1 <> na Primary Assembly 63052 na ctg00000112.1 unplaced-scaffold na na JBOJLP010000026.1 <> na Primary Assembly 58023 na ctg00000113.1 unplaced-scaffold na na JBOJLP010000027.1 <> na Primary Assembly 57192 na ctg00000114.1 unplaced-scaffold na na JBOJLP010000028.1 <> na Primary Assembly 55491 na ctg00000115.1 unplaced-scaffold na na JBOJLP010000029.1 <> na Primary Assembly 53902 na ctg00000116.1 unplaced-scaffold na na JBOJLP010000030.1 <> na Primary Assembly 53580 na ctg00000117.1 unplaced-scaffold na na JBOJLP010000031.1 <> na Primary Assembly 52587 na ctg00000118.1 unplaced-scaffold na na JBOJLP010000032.1 <> na Primary Assembly 51941 na ctg00000119.1 unplaced-scaffold na na JBOJLP010000033.1 <> na Primary Assembly 51847 na ctg00000120.1 unplaced-scaffold na na JBOJLP010000034.1 <> na Primary Assembly 50773 na ctg00000121.1 unplaced-scaffold na na JBOJLP010000035.1 <> na Primary Assembly 50080 na ctg00000122.1 unplaced-scaffold na na JBOJLP010000036.1 <> na Primary Assembly 49454 na ctg00000124.1 unplaced-scaffold na na JBOJLP010000037.1 <> na Primary Assembly 48559 na ctg00000125.1 unplaced-scaffold na na JBOJLP010000038.1 <> na Primary Assembly 48343 na ctg00000126.1 unplaced-scaffold na na JBOJLP010000039.1 <> na Primary Assembly 48259 na ctg00000128.1 unplaced-scaffold na na JBOJLP010000040.1 <> na Primary Assembly 47178 na ctg00000129.1 unplaced-scaffold na na JBOJLP010000041.1 <> na Primary Assembly 47059 na ctg00000130.1 unplaced-scaffold na na JBOJLP010000042.1 <> na Primary Assembly 45949 na ctg00000131.1 unplaced-scaffold na na JBOJLP010000043.1 <> na Primary Assembly 45432 na ctg00000132.1 unplaced-scaffold na na JBOJLP010000044.1 <> na Primary Assembly 45362 na ctg00000133.1 unplaced-scaffold na na JBOJLP010000045.1 <> na Primary Assembly 45300 na ctg00000134.1 unplaced-scaffold na na JBOJLP010000046.1 <> na Primary Assembly 44931 na ctg00000136.1 unplaced-scaffold na na JBOJLP010000047.1 <> na Primary Assembly 44296 na ctg00000137.1 unplaced-scaffold na na JBOJLP010000048.1 <> na Primary Assembly 44206 na ctg00000138.1 unplaced-scaffold na na JBOJLP010000049.1 <> na Primary Assembly 43380 na ctg00000139.1 unplaced-scaffold na na JBOJLP010000050.1 <> na Primary Assembly 42569 na ctg00000140.1 unplaced-scaffold na na JBOJLP010000051.1 <> na Primary Assembly 41867 na ctg00000141.1 unplaced-scaffold na na JBOJLP010000052.1 <> na Primary Assembly 41188 na ctg00000142.1 unplaced-scaffold na na JBOJLP010000053.1 <> na Primary Assembly 40730 na ctg00000145.1 unplaced-scaffold na na JBOJLP010000054.1 <> na Primary Assembly 39931 na ctg00000146.1 unplaced-scaffold na na JBOJLP010000055.1 <> na Primary Assembly 39924 na ctg00000147.1 unplaced-scaffold na na JBOJLP010000056.1 <> na Primary Assembly 39878 na ctg00000148.1 unplaced-scaffold na na JBOJLP010000057.1 <> na Primary Assembly 39864 na ctg00000149.1 unplaced-scaffold na na JBOJLP010000058.1 <> na Primary Assembly 39807 na ctg00000150.1 unplaced-scaffold na na JBOJLP010000059.1 <> na Primary Assembly 38836 na ctg00000151.1 unplaced-scaffold na na JBOJLP010000060.1 <> na Primary Assembly 37140 na ctg00000152.1 unplaced-scaffold na na JBOJLP010000061.1 <> na Primary Assembly 35753 na ctg00000153.1 unplaced-scaffold na na JBOJLP010000062.1 <> na Primary Assembly 35090 na ctg00000154.1 unplaced-scaffold na na JBOJLP010000063.1 <> na Primary Assembly 35070 na ctg00000155.1 unplaced-scaffold na na JBOJLP010000064.1 <> na Primary Assembly 34507 na ctg00000156.1 unplaced-scaffold na na JBOJLP010000065.1 <> na Primary Assembly 33858 na ctg00000157.1 unplaced-scaffold na na JBOJLP010000066.1 <> na Primary Assembly 32548 na ctg00000160.1 unplaced-scaffold na na JBOJLP010000067.1 <> na Primary Assembly 31503 na ctg00000161.1 unplaced-scaffold na na JBOJLP010000068.1 <> na Primary Assembly 30425 na ctg00000162.1 unplaced-scaffold na na JBOJLP010000069.1 <> na Primary Assembly 30340 na ctg00000166.1 unplaced-scaffold na na JBOJLP010000070.1 <> na Primary Assembly 27276 na ctg00000167.1 unplaced-scaffold na na JBOJLP010000071.1 <> na Primary Assembly 26835 na ctg00000170.1 unplaced-scaffold na na JBOJLP010000072.1 <> na Primary Assembly 20121 na ctg00000171.1 unplaced-scaffold na na JBOJLP010000073.1 <> na Primary Assembly 19815 na