# Assembly name: mEleMax1.hap1 # Organism name: Elephas maximus indicus (Asiatic elephant) # Isolate: mEleMax1 # Sex: male # Taxid: 99487 # BioSample: SAMN29174328 # BioProject: PRJNA1247387 # Submitter: Leibniz Institute for Zoo and Wildlife Research # Date: 2025-08-11 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBNQWU01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.5; purge_dups v. 1.2.6; Bionano solve v. 3.3; yahs v. 1.2a.1 # Expected final version: yes # Genome coverage: 51x # Sequencing technology: PacBio Sequel II HiFi; Bionano optical mapping; Arima HiC # GenBank assembly accession: GCA_051911825.1 # Linked assembly: GCA_051911805.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051911855.1 Primary Assembly ## GCA_051911865.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name hap1_chr_1 assembled-molecule 1 Chromosome CM123124.1 <> na Primary Assembly 243324329 na hap1_chr_2 assembled-molecule 2 Chromosome CM123125.1 <> na Primary Assembly 236160408 na hap1_chr_3 assembled-molecule 3 Chromosome CM123126.1 <> na Primary Assembly 219377424 na hap1_chr_4 assembled-molecule 4 Chromosome CM123127.1 <> na Primary Assembly 192825964 na hap1_chr_5 assembled-molecule 5 Chromosome CM123128.1 <> na Primary Assembly 164477691 na hap1_chr_6 assembled-molecule 6 Chromosome CM123129.1 <> na Primary Assembly 141551058 na hap1_chr_7 assembled-molecule 7 Chromosome CM123130.1 <> na Primary Assembly 133700411 na hap1_chr_8 assembled-molecule 8 Chromosome CM123131.1 <> na Primary Assembly 134090202 na hap1_chr_9 assembled-molecule 9 Chromosome CM123132.1 <> na Primary Assembly 125437426 na hap1_chr_10 assembled-molecule 10 Chromosome CM123133.1 <> na Primary Assembly 117534258 na hap1_chr_11 assembled-molecule 11 Chromosome CM123134.1 <> na Primary Assembly 110007532 na hap1_chr_12 assembled-molecule 12 Chromosome CM123135.1 <> na Primary Assembly 109107485 na hap1_chr_13 assembled-molecule 13 Chromosome CM123136.1 <> na Primary Assembly 96585471 na hap1_chr_14 assembled-molecule 14 Chromosome CM123137.1 <> na Primary Assembly 84211173 na hap1_chr_15 assembled-molecule 15 Chromosome CM123138.1 <> na Primary Assembly 92969958 na hap1_chr_16 assembled-molecule 16 Chromosome CM123139.1 <> na Primary Assembly 86756607 na hap1_chr_17 assembled-molecule 17 Chromosome CM123140.1 <> na Primary Assembly 87052876 na hap1_chr_18 assembled-molecule 18 Chromosome CM123141.1 <> na Primary Assembly 80583748 na hap1_chr_19 assembled-molecule 19 Chromosome CM123142.1 <> na Primary Assembly 82406000 na hap1_chr_20 assembled-molecule 20 Chromosome CM123143.1 <> na Primary Assembly 73275821 na hap1_chr_21 assembled-molecule 21 Chromosome CM123144.1 <> na Primary Assembly 84696184 na hap1_chr_22 assembled-molecule 22 Chromosome CM123145.1 <> na Primary Assembly 80601974 na hap1_chr_23 assembled-molecule 23 Chromosome CM123146.1 <> na Primary Assembly 78833993 na hap1_chr_24 assembled-molecule 24 Chromosome CM123147.1 <> na Primary Assembly 69902989 na hap1_chr_25 assembled-molecule 25 Chromosome CM123148.1 <> na Primary Assembly 64897926 na hap1_chr_26 assembled-molecule 26 Chromosome CM123149.1 <> na Primary Assembly 51226407 na hap1_chr_27 assembled-molecule 27 Chromosome CM123150.1 <> na Primary Assembly 44735311 na hap1_chr_X assembled-molecule X Chromosome CM123151.1 <> na Primary Assembly 180681480 na hap1_chr_Y assembled-molecule Y Chromosome CM123152.1 <> na Primary Assembly 34687330 na hap1_scaffold_3 unplaced-scaffold na na JBNQWU010000030.1 <> na Primary Assembly 2514005 na hap1_scaffold_100 unplaced-scaffold na na JBNQWU010000031.1 <> na Primary Assembly 810335 na hap1_scaffold_104 unplaced-scaffold na na JBNQWU010000032.1 <> na Primary Assembly 1148991 na hap1_scaffold_105 unplaced-scaffold na na JBNQWU010000033.1 <> na Primary Assembly 1130298 na hap1_scaffold_106 unplaced-scaffold na na JBNQWU010000034.1 <> na Primary Assembly 1115000 na hap1_scaffold_108 unplaced-scaffold na na JBNQWU010000035.1 <> na Primary Assembly 1090161 na hap1_scaffold_109 unplaced-scaffold na na JBNQWU010000036.1 <> na Primary Assembly 1078000 na hap1_scaffold_114 unplaced-scaffold na na JBNQWU010000037.1 <> na Primary Assembly 1029075 na hap1_scaffold_115 unplaced-scaffold na na JBNQWU010000038.1 <> na Primary Assembly 1024224 na hap1_scaffold_124 unplaced-scaffold na na JBNQWU010000039.1 <> na Primary Assembly 943475 na hap1_scaffold_127 unplaced-scaffold na na JBNQWU010000040.1 <> na Primary Assembly 905916 na hap1_scaffold_128 unplaced-scaffold na na JBNQWU010000041.1 <> na Primary Assembly 886497 na hap1_scaffold_142 unplaced-scaffold na na JBNQWU010000042.1 <> na Primary Assembly 780726 na hap1_scaffold_14a unplaced-scaffold na na JBNQWU010000043.1 <> na Primary Assembly 2266569 na hap1_scaffold_154 unplaced-scaffold na na JBNQWU010000044.1 <> na Primary Assembly 735083 na hap1_scaffold_156 unplaced-scaffold na na JBNQWU010000045.1 <> na Primary Assembly 723967 na hap1_scaffold_157 unplaced-scaffold na na JBNQWU010000046.1 <> na Primary Assembly 721434 na hap1_scaffold_163 unplaced-scaffold na na JBNQWU010000047.1 <> na Primary Assembly 697000 na hap1_scaffold_174 unplaced-scaffold na na JBNQWU010000048.1 <> na Primary Assembly 649773 na hap1_scaffold_178 unplaced-scaffold na na JBNQWU010000049.1 <> na Primary Assembly 630761 na hap1_scaffold_181 unplaced-scaffold na na JBNQWU010000050.1 <> na Primary Assembly 624918 na hap1_scaffold_184 unplaced-scaffold na na JBNQWU010000051.1 <> na Primary Assembly 621638 na hap1_scaffold_192 unplaced-scaffold na na JBNQWU010000052.1 <> na Primary Assembly 596000 na hap1_scaffold_202 unplaced-scaffold na na JBNQWU010000053.1 <> na Primary Assembly 546854 na hap1_scaffold_214 unplaced-scaffold na na JBNQWU010000054.1 <> na Primary Assembly 526000 na hap1_scaffold_217 unplaced-scaffold na na JBNQWU010000055.1 <> na Primary Assembly 519000 na hap1_scaffold_225 unplaced-scaffold na na JBNQWU010000056.1 <> na Primary Assembly 498000 na hap1_scaffold_229 unplaced-scaffold na na JBNQWU010000057.1 <> na Primary Assembly 490970 na hap1_scaffold_234 unplaced-scaffold na na JBNQWU010000058.1 <> na Primary Assembly 477384 na hap1_scaffold_245 unplaced-scaffold na na JBNQWU010000059.1 <> na Primary Assembly 459854 na hap1_scaffold_256 unplaced-scaffold na na JBNQWU010000060.1 <> na Primary Assembly 369170 na hap1_scaffold_270 unplaced-scaffold na na JBNQWU010000061.1 <> na Primary Assembly 405449 na hap1_scaffold_274 unplaced-scaffold na na JBNQWU010000062.1 <> na Primary Assembly 393000 na hap1_scaffold_275 unplaced-scaffold na na JBNQWU010000063.1 <> na Primary Assembly 392000 na hap1_scaffold_278 unplaced-scaffold na na JBNQWU010000064.1 <> na Primary Assembly 387000 na hap1_scaffold_293 unplaced-scaffold na na JBNQWU010000065.1 <> na Primary Assembly 364000 na hap1_scaffold_294 unplaced-scaffold na na JBNQWU010000066.1 <> na Primary Assembly 360000 na hap1_scaffold_305 unplaced-scaffold na na JBNQWU010000067.1 <> na Primary Assembly 336490 na hap1_scaffold_33 unplaced-scaffold na na JBNQWU010000068.1 <> na Primary Assembly 3609374 na hap1_scaffold_333 unplaced-scaffold na na JBNQWU010000069.1 <> na Primary Assembly 306350 na hap1_scaffold_34 unplaced-scaffold na na JBNQWU010000070.1 <> na Primary Assembly 6947000 na hap1_scaffold_356 unplaced-scaffold na na JBNQWU010000071.1 <> na Primary Assembly 279037 na hap1_scaffold_38 unplaced-scaffold na na JBNQWU010000072.1 <> na Primary Assembly 2174489 na hap1_scaffold_388 unplaced-scaffold na na JBNQWU010000073.1 <> na Primary Assembly 247989 na hap1_scaffold_433 unplaced-scaffold na na JBNQWU010000074.1 <> na Primary Assembly 210824 na hap1_scaffold_44 unplaced-scaffold na na JBNQWU010000075.1 <> na Primary Assembly 1196517 na hap1_scaffold_46 unplaced-scaffold na na JBNQWU010000076.1 <> na Primary Assembly 1209927 na hap1_scaffold_47 unplaced-scaffold na na JBNQWU010000077.1 <> na Primary Assembly 3144701 na hap1_scaffold_480 unplaced-scaffold na na JBNQWU010000078.1 <> na Primary Assembly 187774 na hap1_scaffold_50 unplaced-scaffold na na JBNQWU010000079.1 <> na Primary Assembly 1370461 na hap1_scaffold_52 unplaced-scaffold na na JBNQWU010000080.1 <> na Primary Assembly 2992004 na hap1_scaffold_54a unplaced-scaffold na na JBNQWU010000081.1 <> na Primary Assembly 634586 na hap1_scaffold_55 unplaced-scaffold na na JBNQWU010000082.1 <> na Primary Assembly 2670399 na hap1_scaffold_56 unplaced-scaffold na na JBNQWU010000083.1 <> na Primary Assembly 2638278 na hap1_scaffold_59 unplaced-scaffold na na JBNQWU010000084.1 <> na Primary Assembly 2113000 na hap1_scaffold_635 unplaced-scaffold na na JBNQWU010000085.1 <> na Primary Assembly 116679 na hap1_scaffold_643 unplaced-scaffold na na JBNQWU010000086.1 <> na Primary Assembly 113000 na hap1_scaffold_65 unplaced-scaffold na na JBNQWU010000087.1 <> na Primary Assembly 1197057 na hap1_scaffold_69 unplaced-scaffold na na JBNQWU010000088.1 <> na Primary Assembly 1784294 na hap1_scaffold_70 unplaced-scaffold na na JBNQWU010000089.1 <> na Primary Assembly 1465488 na hap1_scaffold_72 unplaced-scaffold na na JBNQWU010000090.1 <> na Primary Assembly 1763540 na hap1_scaffold_732 unplaced-scaffold na na JBNQWU010000091.1 <> na Primary Assembly 86000 na hap1_scaffold_76 unplaced-scaffold na na JBNQWU010000092.1 <> na Primary Assembly 1615000 na hap1_scaffold_808 unplaced-scaffold na na JBNQWU010000093.1 <> na Primary Assembly 67000 na hap1_scaffold_81 unplaced-scaffold na na JBNQWU010000094.1 <> na Primary Assembly 1542865 na hap1_scaffold_831 unplaced-scaffold na na JBNQWU010000095.1 <> na Primary Assembly 60771 na hap1_scaffold_84 unplaced-scaffold na na JBNQWU010000096.1 <> na Primary Assembly 1459046 na hap1_scaffold_85 unplaced-scaffold na na JBNQWU010000097.1 <> na Primary Assembly 1457915 na hap1_scaffold_86 unplaced-scaffold na na JBNQWU010000098.1 <> na Primary Assembly 532650 na hap1_scaffold_88 unplaced-scaffold na na JBNQWU010000099.1 <> na Primary Assembly 288815 na hap1_scaffold_89 unplaced-scaffold na na JBNQWU010000100.1 <> na Primary Assembly 1386595 na hap1_scaffold_893 unplaced-scaffold na na JBNQWU010000101.1 <> na Primary Assembly 49835 na hap1_scaffold_943 unplaced-scaffold na na JBNQWU010000102.1 <> na Primary Assembly 30884 na hap1_scaffold_972 unplaced-scaffold na na JBNQWU010000103.1 <> na Primary Assembly 14000 na ctg000001l assembled-molecule MT Mitochondrion CM123153.1 <> na non-nuclear 16146 na