# Assembly name: Cochliomyia_hominivorax_M2_hap2_scaffolds # Organism name: Cochliomyia hominivorax (primary screw-worm) # Isolate: Jam-Pan-F1 # Sex: male # Taxid: 115425 # BioSample: SAMN48703011 # BioProject: PRJNA1276070 # Submitter: USDA-Agricultural Research Service, USA # Date: 2025-06-30 # Assembly type: alternate-pseudohaplotype # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBPFHU01 # Assembly method: HiFiASM v. 0.24.0-r702 # Expected final version: yes # Genome coverage: 121x # Sequencing technology: PacBio CCS # GenBank assembly accession: GCA_051144935.1 # Linked assembly: GCA_051144965.1 (principal pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051144975.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome1 assembled-molecule 1 Chromosome CM118034.1 <> na Primary Assembly 109618979 na Chromosome2 assembled-molecule 2 Chromosome CM118035.1 <> na Primary Assembly 85541325 na Chromosome3 assembled-molecule 3 Chromosome CM118036.1 <> na Primary Assembly 86408758 na Chromosome4 assembled-molecule 4 Chromosome CM118037.1 <> na Primary Assembly 82654628 na Chromosome5 assembled-molecule 5 Chromosome CM118038.1 <> na Primary Assembly 78572029 na ChromosomeX assembled-molecule X Chromosome CM118039.1 <> na Primary Assembly 6963279 na ctg00000050.1 unplaced-scaffold na na JBPFHU010000007.1 <> na Primary Assembly 2628183 na ctg00000051.1 unplaced-scaffold na na JBPFHU010000008.1 <> na Primary Assembly 2278291 na ctg00000052.1 unplaced-scaffold na na JBPFHU010000009.1 <> na Primary Assembly 1875637 na ctg00000053.1 unplaced-scaffold na na JBPFHU010000010.1 <> na Primary Assembly 874952 na ctg00000056.1 unplaced-scaffold na na JBPFHU010000011.1 <> na Primary Assembly 466625 na ctg00000057.1 unplaced-scaffold na na JBPFHU010000012.1 <> na Primary Assembly 402805 na ctg00000060.1 unplaced-scaffold na na JBPFHU010000013.1 <> na Primary Assembly 350871 na ctg00000061.1 unplaced-scaffold na na JBPFHU010000014.1 <> na Primary Assembly 308269 na ctg00000062.1 unplaced-scaffold na na JBPFHU010000015.1 <> na Primary Assembly 253682 na ctg00000063.1 unplaced-scaffold na na JBPFHU010000016.1 <> na Primary Assembly 241066 na ctg00000064.1 unplaced-scaffold na na JBPFHU010000017.1 <> na Primary Assembly 227146 na ctg00000065.1 unplaced-scaffold na na JBPFHU010000018.1 <> na Primary Assembly 214736 na ctg00000066.1 unplaced-scaffold na na JBPFHU010000019.1 <> na Primary Assembly 210861 na ctg00000067.1 unplaced-scaffold na na JBPFHU010000020.1 <> na Primary Assembly 199264 na ctg00000068.1 unplaced-scaffold na na JBPFHU010000021.1 <> na Primary Assembly 198978 na ctg00000070.1 unplaced-scaffold na na JBPFHU010000022.1 <> na Primary Assembly 187933 na ctg00000071.1 unplaced-scaffold na na JBPFHU010000023.1 <> na Primary Assembly 156499 na ctg00000072.1 unplaced-scaffold na na JBPFHU010000024.1 <> na Primary Assembly 155886 na ctg00000073.1 unplaced-scaffold na na JBPFHU010000025.1 <> na Primary Assembly 154112 na ctg00000076.1 unplaced-scaffold na na JBPFHU010000026.1 <> na Primary Assembly 138769 na ctg00000078.1 unplaced-scaffold na na JBPFHU010000027.1 <> na Primary Assembly 116186 na ctg00000079.1 unplaced-scaffold na na JBPFHU010000028.1 <> na Primary Assembly 111833 na ctg00000080.1 unplaced-scaffold na na JBPFHU010000029.1 <> na Primary Assembly 110796 na ctg00000081.1 unplaced-scaffold na na JBPFHU010000030.1 <> na Primary Assembly 108615 na ctg00000082.1 unplaced-scaffold na na JBPFHU010000031.1 <> na Primary Assembly 107102 na ctg00000083.1 unplaced-scaffold na na JBPFHU010000032.1 <> na Primary Assembly 106521 na ctg00000084.1 unplaced-scaffold na na JBPFHU010000033.1 <> na Primary Assembly 102812 na ctg00000086.1 unplaced-scaffold na na JBPFHU010000034.1 <> na Primary Assembly 97176 na ctg00000087.1 unplaced-scaffold na na JBPFHU010000035.1 <> na Primary Assembly 92477 na ctg00000088.1 unplaced-scaffold na na JBPFHU010000036.1 <> na Primary Assembly 90473 na ctg00000089.1 unplaced-scaffold na na JBPFHU010000037.1 <> na Primary Assembly 87436 na ctg00000090.1 unplaced-scaffold na na JBPFHU010000038.1 <> na Primary Assembly 81691 na ctg00000091.1 unplaced-scaffold na na JBPFHU010000039.1 <> na Primary Assembly 74024 na ctg00000092.1 unplaced-scaffold na na JBPFHU010000040.1 <> na Primary Assembly 67070 na ctg00000093.1 unplaced-scaffold na na JBPFHU010000041.1 <> na Primary Assembly 66485 na ctg00000094.1 unplaced-scaffold na na JBPFHU010000042.1 <> na Primary Assembly 66402 na ctg00000095.1 unplaced-scaffold na na JBPFHU010000043.1 <> na Primary Assembly 65040 na ctg00000096.1 unplaced-scaffold na na JBPFHU010000044.1 <> na Primary Assembly 64766 na ctg00000097.1 unplaced-scaffold na na JBPFHU010000045.1 <> na Primary Assembly 64438 na ctg00000098.1 unplaced-scaffold na na JBPFHU010000046.1 <> na Primary Assembly 64363 na ctg00000100.1 unplaced-scaffold na na JBPFHU010000047.1 <> na Primary Assembly 61708 na ctg00000101.1 unplaced-scaffold na na JBPFHU010000048.1 <> na Primary Assembly 55714 na ctg00000102.1 unplaced-scaffold na na JBPFHU010000049.1 <> na Primary Assembly 55316 na ctg00000103.1 unplaced-scaffold na na JBPFHU010000050.1 <> na Primary Assembly 52699 na ctg00000104.1 unplaced-scaffold na na JBPFHU010000051.1 <> na Primary Assembly 51987 na ctg00000105.1 unplaced-scaffold na na JBPFHU010000052.1 <> na Primary Assembly 50647 na ctg00000106.1 unplaced-scaffold na na JBPFHU010000053.1 <> na Primary Assembly 50373 na ctg00000107.1 unplaced-scaffold na na JBPFHU010000054.1 <> na Primary Assembly 50298 na ctg00000108.1 unplaced-scaffold na na JBPFHU010000055.1 <> na Primary Assembly 50027 na ctg00000109.1 unplaced-scaffold na na JBPFHU010000056.1 <> na Primary Assembly 49581 na ctg00000110.1 unplaced-scaffold na na JBPFHU010000057.1 <> na Primary Assembly 49150 na ctg00000111.1 unplaced-scaffold na na JBPFHU010000058.1 <> na Primary Assembly 47827 na ctg00000112.1 unplaced-scaffold na na JBPFHU010000059.1 <> na Primary Assembly 47252 na ctg00000113.1 unplaced-scaffold na na JBPFHU010000060.1 <> na Primary Assembly 47107 na ctg00000114.1 unplaced-scaffold na na JBPFHU010000061.1 <> na Primary Assembly 46573 na ctg00000115.1 unplaced-scaffold na na JBPFHU010000062.1 <> na Primary Assembly 45856 na ctg00000116.1 unplaced-scaffold na na JBPFHU010000063.1 <> na Primary Assembly 45603 na ctg00000117.1 unplaced-scaffold na na JBPFHU010000064.1 <> na Primary Assembly 45346 na ctg00000118.1 unplaced-scaffold na na JBPFHU010000065.1 <> na Primary Assembly 45164 na ctg00000119.1 unplaced-scaffold na na JBPFHU010000066.1 <> na Primary Assembly 44360 na ctg00000120.1 unplaced-scaffold na na JBPFHU010000067.1 <> na Primary Assembly 43924 na ctg00000121.1 unplaced-scaffold na na JBPFHU010000068.1 <> na Primary Assembly 43816 na ctg00000122.1 unplaced-scaffold na na JBPFHU010000069.1 <> na Primary Assembly 42973 na ctg00000123.1 unplaced-scaffold na na JBPFHU010000070.1 <> na Primary Assembly 42720 na ctg00000124.1 unplaced-scaffold na na JBPFHU010000071.1 <> na Primary Assembly 42353 na ctg00000125.1 unplaced-scaffold na na JBPFHU010000072.1 <> na Primary Assembly 41944 na ctg00000126.1 unplaced-scaffold na na JBPFHU010000073.1 <> na Primary Assembly 41333 na ctg00000128.1 unplaced-scaffold na na JBPFHU010000074.1 <> na Primary Assembly 38081 na ctg00000129.1 unplaced-scaffold na na JBPFHU010000075.1 <> na Primary Assembly 35463 na ctg00000131.1 unplaced-scaffold na na JBPFHU010000076.1 <> na Primary Assembly 34837 na ctg00000132.1 unplaced-scaffold na na JBPFHU010000077.1 <> na Primary Assembly 34597 na ctg00000133.1 unplaced-scaffold na na JBPFHU010000078.1 <> na Primary Assembly 33555 na ctg00000134.1 unplaced-scaffold na na JBPFHU010000079.1 <> na Primary Assembly 33100 na ctg00000135.1 unplaced-scaffold na na JBPFHU010000080.1 <> na Primary Assembly 32915 na ctg00000137.1 unplaced-scaffold na na JBPFHU010000081.1 <> na Primary Assembly 31160 na ctg00000138.1 unplaced-scaffold na na JBPFHU010000082.1 <> na Primary Assembly 31027 na ctg00000141.1 unplaced-scaffold na na JBPFHU010000083.1 <> na Primary Assembly 30685 na ctg00000143.1 unplaced-scaffold na na JBPFHU010000084.1 <> na Primary Assembly 30337 na ctg00000149.1 unplaced-scaffold na na JBPFHU010000085.1 <> na Primary Assembly 28446 na ctg00000151.1 unplaced-scaffold na na JBPFHU010000086.1 <> na Primary Assembly 28346 na ctg00000152.1 unplaced-scaffold na na JBPFHU010000087.1 <> na Primary Assembly 28319 na ctg00000155.1 unplaced-scaffold na na JBPFHU010000088.1 <> na Primary Assembly 27078 na ctg00000158.1 unplaced-scaffold na na JBPFHU010000089.1 <> na Primary Assembly 24868 na ctg00000169.1 unplaced-scaffold na na JBPFHU010000090.1 <> na Primary Assembly 20417 na ctg00000170.1 unplaced-scaffold na na JBPFHU010000091.1 <> na Primary Assembly 20386 na ctg00000171.1 unplaced-scaffold na na JBPFHU010000092.1 <> na Primary Assembly 20125 na ctg00000176.1 unplaced-scaffold na na JBPFHU010000093.1 <> na Primary Assembly 18443 na ctg00000178.1 unplaced-scaffold na na JBPFHU010000094.1 <> na Primary Assembly 15698 na ctg00000179.1 unplaced-scaffold na na JBPFHU010000095.1 <> na Primary Assembly 15102 na ctg00000180.1 unplaced-scaffold na na JBPFHU010000096.1 <> na Primary Assembly 14473 na