# Assembly name: rPodUni1.pri # Organism name: Podocnemis unifilis (yellow-spotted Amazon River turtle) # Isolate: rPodUni1 # Sex: male # Taxid: 227871 # BioSample: SAMN47848212 # BioProject: PRJNA1248030 # Submitter: Vertebrate Genomes Project # Date: 2026-03-10 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBNCFJ02 # Assembly method: FALCON v. 1.8.1; FALCON-Unzip v. 1.3.7; purge_dups v. 1.2.3; Scaff10x v. 4.2; Bionano Solve v. 1.6.1; Salsa2 v. 2.3; Gap closing with gcpp v. 2.0.2; Polishing with 10x reads and freebayes v. 1.3.2; Hapcut2 v. git commit 1ee1d58; whatshap v. 1.6; freebayes v. 1.3.2 # Expected final version: No # Genome coverage: 66.0x # Sequencing technology: PacBio CLR; Arima Hi-C; 10X-linked reads; Bionano optical mapping (Saphyr) # RefSeq category: Reference Genome # GenBank assembly accession: GCA_050000005.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_050000015.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM113745.2 <> na Primary Assembly 432795286 na SUPER_2 assembled-molecule 2 Chromosome CM113746.2 <> na Primary Assembly 399297822 na SUPER_3 assembled-molecule 3 Chromosome CM113747.2 <> na Primary Assembly 309432264 na SUPER_4 assembled-molecule 4 Chromosome CM113748.2 <> na Primary Assembly 299507546 na SUPER_5 assembled-molecule 5 Chromosome CM113749.2 <> na Primary Assembly 264355593 na SUPER_6 assembled-molecule 6 Chromosome CM113750.2 <> na Primary Assembly 137537446 na SUPER_7 assembled-molecule 7 Chromosome CM113751.2 <> na Primary Assembly 112181155 na SUPER_8 assembled-molecule 8 Chromosome CM113752.2 <> na Primary Assembly 110939663 na SUPER_9 assembled-molecule 9 Chromosome CM113753.2 <> na Primary Assembly 83935496 na SUPER_10 assembled-molecule 10 Chromosome CM113754.2 <> na Primary Assembly 81970658 na SUPER_11 assembled-molecule 11 Chromosome CM113755.2 <> na Primary Assembly 73476123 na SUPER_12 assembled-molecule 12 Chromosome CM113756.2 <> na Primary Assembly 40757170 na SUPER_13 assembled-molecule 13 Chromosome CM113757.2 <> na Primary Assembly 36183471 na SUPER_14 assembled-molecule 14 Chromosome CM113758.2 <> na Primary Assembly 30104290 na manual_scaffold_15 unplaced-scaffold na na JBNCFJ020000015.1 <> na Primary Assembly 3219309 na manual_scaffold_16 unplaced-scaffold na na JBNCFJ020000016.1 <> na Primary Assembly 2171669 na manual_scaffold_17 unplaced-scaffold na na JBNCFJ020000017.1 <> na Primary Assembly 1619762 na manual_scaffold_18 unplaced-scaffold na na JBNCFJ020000018.1 <> na Primary Assembly 1143330 na manual_scaffold_19 unplaced-scaffold na na JBNCFJ020000019.1 <> na Primary Assembly 1012934 na manual_scaffold_20 unplaced-scaffold na na JBNCFJ020000020.1 <> na Primary Assembly 918997 na manual_scaffold_21 unplaced-scaffold na na JBNCFJ020000021.1 <> na Primary Assembly 690063 na manual_scaffold_22 unplaced-scaffold na na JBNCFJ020000022.1 <> na Primary Assembly 538294 na manual_scaffold_23 unplaced-scaffold na na JBNCFJ020000023.1 <> na Primary Assembly 530286 na manual_scaffold_24 unplaced-scaffold na na JBNCFJ020000024.1 <> na Primary Assembly 504374 na manual_scaffold_25 unplaced-scaffold na na JBNCFJ020000025.1 <> na Primary Assembly 482659 na manual_scaffold_26 unplaced-scaffold na na JBNCFJ020000026.1 <> na Primary Assembly 466624 na manual_scaffold_27 unplaced-scaffold na na JBNCFJ020000027.1 <> na Primary Assembly 449193 na manual_scaffold_28 unplaced-scaffold na na JBNCFJ020000028.1 <> na Primary Assembly 397494 na manual_scaffold_29 unplaced-scaffold na na JBNCFJ020000029.1 <> na Primary Assembly 393340 na manual_scaffold_30 unplaced-scaffold na na JBNCFJ020000030.1 <> na Primary Assembly 379479 na manual_scaffold_31 unplaced-scaffold na na JBNCFJ020000031.1 <> na Primary Assembly 375653 na manual_scaffold_32 unplaced-scaffold na na JBNCFJ020000032.1 <> na Primary Assembly 330310 na manual_scaffold_33 unplaced-scaffold na na JBNCFJ020000033.1 <> na Primary Assembly 300654 na manual_scaffold_34 unplaced-scaffold na na JBNCFJ020000034.1 <> na Primary Assembly 298588 na manual_scaffold_35 unplaced-scaffold na na JBNCFJ020000035.1 <> na Primary Assembly 297972 na manual_scaffold_36 unplaced-scaffold na na JBNCFJ020000036.1 <> na Primary Assembly 293240 na manual_scaffold_37 unplaced-scaffold na na JBNCFJ020000037.1 <> na Primary Assembly 283046 na manual_scaffold_38 unplaced-scaffold na na JBNCFJ020000038.1 <> na Primary Assembly 282954 na manual_scaffold_39 unplaced-scaffold na na JBNCFJ020000039.1 <> na Primary Assembly 279735 na manual_scaffold_40 unplaced-scaffold na na JBNCFJ020000040.1 <> na Primary Assembly 278850 na manual_scaffold_41 unplaced-scaffold na na JBNCFJ020000041.1 <> na Primary Assembly 273477 na manual_scaffold_42 unplaced-scaffold na na JBNCFJ020000042.1 <> na Primary Assembly 266364 na manual_scaffold_43 unplaced-scaffold na na JBNCFJ020000043.1 <> na Primary Assembly 264862 na manual_scaffold_44 unplaced-scaffold na na JBNCFJ020000044.1 <> na Primary Assembly 241940 na manual_scaffold_45 unplaced-scaffold na na JBNCFJ020000045.1 <> na Primary Assembly 229184 na manual_scaffold_46 unplaced-scaffold na na JBNCFJ020000046.1 <> na Primary Assembly 220438 na manual_scaffold_47 unplaced-scaffold na na JBNCFJ020000047.1 <> na Primary Assembly 219046 na manual_scaffold_48 unplaced-scaffold na na JBNCFJ020000048.1 <> na Primary Assembly 196598 na manual_scaffold_49 unplaced-scaffold na na JBNCFJ020000049.1 <> na Primary Assembly 194041 na manual_scaffold_50 unplaced-scaffold na na JBNCFJ020000050.1 <> na Primary Assembly 185342 na manual_scaffold_51 unplaced-scaffold na na JBNCFJ020000051.1 <> na Primary Assembly 180466 na manual_scaffold_52 unplaced-scaffold na na JBNCFJ020000052.1 <> na Primary Assembly 179061 na manual_scaffold_53 unplaced-scaffold na na JBNCFJ020000053.1 <> na Primary Assembly 173714 na manual_scaffold_54 unplaced-scaffold na na JBNCFJ020000054.1 <> na Primary Assembly 163578 na manual_scaffold_55 unplaced-scaffold na na JBNCFJ020000055.1 <> na Primary Assembly 160206 na manual_scaffold_56 unplaced-scaffold na na JBNCFJ020000056.1 <> na Primary Assembly 152041 na manual_scaffold_57 unplaced-scaffold na na JBNCFJ020000057.1 <> na Primary Assembly 148052 na manual_scaffold_58 unplaced-scaffold na na JBNCFJ020000058.1 <> na Primary Assembly 142105 na manual_scaffold_59 unplaced-scaffold na na JBNCFJ020000059.1 <> na Primary Assembly 128291 na manual_scaffold_60 unplaced-scaffold na na JBNCFJ020000060.1 <> na Primary Assembly 123382 na manual_scaffold_61 unplaced-scaffold na na JBNCFJ020000061.1 <> na Primary Assembly 115665 na manual_scaffold_62 unplaced-scaffold na na JBNCFJ020000062.1 <> na Primary Assembly 114044 na manual_scaffold_63 unplaced-scaffold na na JBNCFJ020000063.1 <> na Primary Assembly 100570 na manual_scaffold_64 unplaced-scaffold na na JBNCFJ020000064.1 <> na Primary Assembly 93613 na manual_scaffold_65 unplaced-scaffold na na JBNCFJ020000065.1 <> na Primary Assembly 91828 na manual_scaffold_66 unplaced-scaffold na na JBNCFJ020000066.1 <> na Primary Assembly 90778 na manual_scaffold_67 unplaced-scaffold na na JBNCFJ020000067.1 <> na Primary Assembly 83977 na manual_scaffold_68 unplaced-scaffold na na JBNCFJ020000068.1 <> na Primary Assembly 82139 na manual_scaffold_69 unplaced-scaffold na na JBNCFJ020000069.1 <> na Primary Assembly 81141 na manual_scaffold_70 unplaced-scaffold na na JBNCFJ020000070.1 <> na Primary Assembly 75649 na manual_scaffold_71 unplaced-scaffold na na JBNCFJ020000071.1 <> na Primary Assembly 75575 na manual_scaffold_72 unplaced-scaffold na na JBNCFJ020000072.1 <> na Primary Assembly 75053 na manual_scaffold_73 unplaced-scaffold na na JBNCFJ020000073.1 <> na Primary Assembly 63761 na manual_scaffold_74 unplaced-scaffold na na JBNCFJ020000074.1 <> na Primary Assembly 55632 na manual_scaffold_75 unplaced-scaffold na na JBNCFJ020000075.1 <> na Primary Assembly 50690 na manual_scaffold_76 unplaced-scaffold na na JBNCFJ020000076.1 <> na Primary Assembly 50202 na manual_scaffold_77 unplaced-scaffold na na JBNCFJ020000077.1 <> na Primary Assembly 49999 na manual_scaffold_78 unplaced-scaffold na na JBNCFJ020000078.1 <> na Primary Assembly 49994 na manual_scaffold_79 unplaced-scaffold na na JBNCFJ020000079.1 <> na Primary Assembly 48681 na manual_scaffold_80 unplaced-scaffold na na JBNCFJ020000080.1 <> na Primary Assembly 46172 na manual_scaffold_81 unplaced-scaffold na na JBNCFJ020000081.1 <> na Primary Assembly 38818 na manual_scaffold_83 unplaced-scaffold na na JBNCFJ020000082.1 <> na Primary Assembly 36400 na manual_scaffold_82 unplaced-scaffold na na JBNCFJ020000083.1 <> na Primary Assembly 36369 na manual_scaffold_84 unplaced-scaffold na na JBNCFJ020000084.1 <> na Primary Assembly 35884 na manual_scaffold_85 unplaced-scaffold na na JBNCFJ020000085.1 <> na Primary Assembly 31959 na manual_scaffold_86 unplaced-scaffold na na JBNCFJ020000086.1 <> na Primary Assembly 31397 na manual_scaffold_87 unplaced-scaffold na na JBNCFJ020000087.1 <> na Primary Assembly 20838 na