# Assembly name: SynTyp1_v1.hap1 # Organism name: Syngnathus typhle (broad-nosed pipefish) # Isolate: SK-2024d # Taxid: 161592 # BioSample: SAMN36735486 # BioProject: PRJNA1148218 # Submitter: University of Copenhagen # Date: 2025-03-03 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLUSR01 # Assembly method: Hifiasm v. 0.19; purge_dups v. 1.2.5; yahs v. 1.2a.1; samba v. 4.1.0 # Expected final version: yes # Genome coverage: 60x # Sequencing technology: HiFi; HiC # GenBank assembly accession: GCA_048301445.1 # Linked assembly: GCA_048301605.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_048301485.1 Primary Assembly ## GCA_048301495.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM107665.1 <> na Primary Assembly 28315844 na chr2 assembled-molecule 2 Chromosome CM107666.1 <> na Primary Assembly 26126302 na chr3 assembled-molecule 3 Chromosome CM107667.1 <> na Primary Assembly 21754133 na chr4 assembled-molecule 4 Chromosome CM107668.1 <> na Primary Assembly 20932455 na chr5 assembled-molecule 5 Chromosome CM107669.1 <> na Primary Assembly 19378207 na chr6 assembled-molecule 6 Chromosome CM107670.1 <> na Primary Assembly 18729597 na chr7 assembled-molecule 7 Chromosome CM107671.1 <> na Primary Assembly 17879568 na chr8 assembled-molecule 8 Chromosome CM107672.1 <> na Primary Assembly 16212348 na chr9 assembled-molecule 9 Chromosome CM107673.1 <> na Primary Assembly 15752117 na chr10 assembled-molecule 10 Chromosome CM107674.1 <> na Primary Assembly 15546630 na chr11 assembled-molecule 11 Chromosome CM107675.1 <> na Primary Assembly 13850472 na chr12 assembled-molecule 12 Chromosome CM107676.1 <> na Primary Assembly 13376312 na chr13 assembled-molecule 13 Chromosome CM107677.1 <> na Primary Assembly 13057006 na chr14 assembled-molecule 14 Chromosome CM107678.1 <> na Primary Assembly 12997773 na chr15 assembled-molecule 15 Chromosome CM107679.1 <> na Primary Assembly 12204325 na chr16 assembled-molecule 16 Chromosome CM107680.1 <> na Primary Assembly 12060907 na chr17 assembled-molecule 17 Chromosome CM107681.1 <> na Primary Assembly 10875365 na chr18 assembled-molecule 18 Chromosome CM107682.1 <> na Primary Assembly 9693522 na chr19 assembled-molecule 19 Chromosome CM107683.1 <> na Primary Assembly 8812093 na chr20 assembled-molecule 20 Chromosome CM107684.1 <> na Primary Assembly 7862902 na chr21 assembled-molecule 21 Chromosome CM107685.1 <> na Primary Assembly 7693156 na chr22 assembled-molecule 22 Chromosome CM107686.1 <> na Primary Assembly 7312977 na scaffold_56 unplaced-scaffold na na JBLUSR010000002.1 <> na Primary Assembly 358822 na scaffold_144 unplaced-scaffold na na JBLUSR010000003.1 <> na Primary Assembly 51955 na scaffold_124 unplaced-scaffold na na JBLUSR010000006.1 <> na Primary Assembly 101133 na scaffold_48 unplaced-scaffold na na JBLUSR010000008.1 <> na Primary Assembly 488564 na scaffold_37 unplaced-scaffold na na JBLUSR010000009.1 <> na Primary Assembly 661977 na scaffold_78 unplaced-scaffold na na JBLUSR010000010.1 <> na Primary Assembly 232222 na scaffold_101 unplaced-scaffold na na JBLUSR010000011.1 <> na Primary Assembly 153328 na scaffold_111 unplaced-scaffold na na JBLUSR010000012.1 <> na Primary Assembly 133000 na scaffold_145 unplaced-scaffold na na JBLUSR010000014.1 <> na Primary Assembly 51362 na scaffold_23 unplaced-scaffold na na JBLUSR010000015.1 <> na Primary Assembly 463662 na scaffold_116 unplaced-scaffold na na JBLUSR010000016.1 <> na Primary Assembly 118065 na scaffold_106 unplaced-scaffold na na JBLUSR010000017.1 <> na Primary Assembly 138875 na scaffold_125 unplaced-scaffold na na JBLUSR010000018.1 <> na Primary Assembly 97304 na scaffold_132 unplaced-scaffold na na JBLUSR010000019.1 <> na Primary Assembly 75000 na scaffold_30 unplaced-scaffold na na JBLUSR010000020.1 <> na Primary Assembly 1045000 na scaffold_31 unplaced-scaffold na na JBLUSR010000021.1 <> na Primary Assembly 936557 na scaffold_85 unplaced-scaffold na na JBLUSR010000022.1 <> na Primary Assembly 215035 na scaffold_64 unplaced-scaffold na na JBLUSR010000023.1 <> na Primary Assembly 286868 na scaffold_82 unplaced-scaffold na na JBLUSR010000024.1 <> na Primary Assembly 218006 na scaffold_58 unplaced-scaffold na na JBLUSR010000025.1 <> na Primary Assembly 334166 na scaffold_46 unplaced-scaffold na na JBLUSR010000026.1 <> na Primary Assembly 491339 na scaffold_62 unplaced-scaffold na na JBLUSR010000027.1 <> na Primary Assembly 300087 na scaffold_65 unplaced-scaffold na na JBLUSR010000028.1 <> na Primary Assembly 286033 na scaffold_84 unplaced-scaffold na na JBLUSR010000029.1 <> na Primary Assembly 216301 na scaffold_76 unplaced-scaffold na na JBLUSR010000030.1 <> na Primary Assembly 234781 na scaffold_69 unplaced-scaffold na na JBLUSR010000031.1 <> na Primary Assembly 279450 na scaffold_131 unplaced-scaffold na na JBLUSR010000032.1 <> na Primary Assembly 75000 na scaffold_140 unplaced-scaffold na na JBLUSR010000033.1 <> na Primary Assembly 64000 na scaffold_33 unplaced-scaffold na na JBLUSR010000036.1 <> na Primary Assembly 785146 na scaffold_89 unplaced-scaffold na na JBLUSR010000037.1 <> na Primary Assembly 201729 na scaffold_112 unplaced-scaffold na na JBLUSR010000038.1 <> na Primary Assembly 131136 na scaffold_102 unplaced-scaffold na na JBLUSR010000039.1 <> na Primary Assembly 145696 na scaffold_27 unplaced-scaffold na na JBLUSR010000040.1 <> na Primary Assembly 1217000 na scaffold_136 unplaced-scaffold na na JBLUSR010000041.1 <> na Primary Assembly 69295 na scaffold_120 unplaced-scaffold na na JBLUSR010000042.1 <> na Primary Assembly 110000 na scaffold_150 unplaced-scaffold na na JBLUSR010000043.1 <> na Primary Assembly 44000 na scaffold_53 unplaced-scaffold na na JBLUSR010000044.1 <> na Primary Assembly 370846 na scaffold_47 unplaced-scaffold na na JBLUSR010000045.1 <> na Primary Assembly 490000 na scaffold_133 unplaced-scaffold na na JBLUSR010000046.1 <> na Primary Assembly 74000 na scaffold_99 unplaced-scaffold na na JBLUSR010000047.1 <> na Primary Assembly 164920 na scaffold_41 unplaced-scaffold na na JBLUSR010000048.1 <> na Primary Assembly 597000 na scaffold_40 unplaced-scaffold na na JBLUSR010000049.1 <> na Primary Assembly 599957 na scaffold_117 unplaced-scaffold na na JBLUSR010000050.1 <> na Primary Assembly 114000 na scaffold_107 unplaced-scaffold na na JBLUSR010000051.1 <> na Primary Assembly 137766 na scaffold_70 unplaced-scaffold na na JBLUSR010000052.1 <> na Primary Assembly 279295 na scaffold_71 unplaced-scaffold na na JBLUSR010000053.1 <> na Primary Assembly 273223 na scaffold_26 unplaced-scaffold na na JBLUSR010000055.1 <> na Primary Assembly 1641271 na scaffold_95 unplaced-scaffold na na JBLUSR010000056.1 <> na Primary Assembly 169000 na scaffold_92 unplaced-scaffold na na JBLUSR010000057.1 <> na Primary Assembly 183000 na scaffold_94 unplaced-scaffold na na JBLUSR010000058.1 <> na Primary Assembly 169873 na scaffold_38 unplaced-scaffold na na JBLUSR010000059.1 <> na Primary Assembly 619414 na scaffold_77 unplaced-scaffold na na JBLUSR010000060.1 <> na Primary Assembly 232546 na scaffold_103 unplaced-scaffold na na JBLUSR010000061.1 <> na Primary Assembly 140695 na scaffold_113 unplaced-scaffold na na JBLUSR010000062.1 <> na Primary Assembly 123267 na scaffold_51 unplaced-scaffold na na JBLUSR010000063.1 <> na Primary Assembly 413224 na scaffold_50 unplaced-scaffold na na JBLUSR010000064.1 <> na Primary Assembly 440000 na scaffold_57 unplaced-scaffold na na JBLUSR010000065.1 <> na Primary Assembly 358648 na scaffold_137 unplaced-scaffold na na JBLUSR010000066.1 <> na Primary Assembly 66135 na scaffold_43 unplaced-scaffold na na JBLUSR010000067.1 <> na Primary Assembly 538713 na scaffold_128 unplaced-scaffold na na JBLUSR010000068.1 <> na Primary Assembly 90511 na scaffold_129 unplaced-scaffold na na JBLUSR010000070.1 <> na Primary Assembly 88000 na scaffold_73 unplaced-scaffold na na JBLUSR010000071.1 <> na Primary Assembly 269643 na scaffold_28 unplaced-scaffold na na JBLUSR010000072.1 <> na Primary Assembly 1198989 na scaffold_148 unplaced-scaffold na na JBLUSR010000074.1 <> na Primary Assembly 49661 na scaffold_36 unplaced-scaffold na na JBLUSR010000075.1 <> na Primary Assembly 685777 na scaffold_80 unplaced-scaffold na na JBLUSR010000076.1 <> na Primary Assembly 225445 na scaffold_81 unplaced-scaffold na na JBLUSR010000077.1 <> na Primary Assembly 223168 na scaffold_67 unplaced-scaffold na na JBLUSR010000078.1 <> na Primary Assembly 285066 na scaffold_134 unplaced-scaffold na na JBLUSR010000079.1 <> na Primary Assembly 73000 na scaffold_61 unplaced-scaffold na na JBLUSR010000080.1 <> na Primary Assembly 307000 na scaffold_60 unplaced-scaffold na na JBLUSR010000081.1 <> na Primary Assembly 308392 na scaffold_87 unplaced-scaffold na na JBLUSR010000082.1 <> na Primary Assembly 205380 na scaffold_29 unplaced-scaffold na na JBLUSR010000084.1 <> na Primary Assembly 1193942 na scaffold_96 unplaced-scaffold na na JBLUSR010000085.1 <> na Primary Assembly 167096 na scaffold_142 unplaced-scaffold na na JBLUSR010000086.1 <> na Primary Assembly 61553 na scaffold_25 unplaced-scaffold na na JBLUSR010000088.1 <> na Primary Assembly 1053471 na scaffold_122 unplaced-scaffold na na JBLUSR010000089.1 <> na Primary Assembly 107000 na scaffold_152 unplaced-scaffold na na JBLUSR010000090.1 <> na Primary Assembly 24810 na scaffold_24 unplaced-scaffold na na JBLUSR010000091.1 <> na Primary Assembly 183918 na scaffold_135 unplaced-scaffold na na JBLUSR010000092.1 <> na Primary Assembly 71201 na scaffold_110 unplaced-scaffold na na JBLUSR010000093.1 <> na Primary Assembly 134000 na scaffold_100 unplaced-scaffold na na JBLUSR010000094.1 <> na Primary Assembly 154746 na scaffold_83 unplaced-scaffold na na JBLUSR010000096.1 <> na Primary Assembly 216961 na scaffold_39 unplaced-scaffold na na JBLUSR010000098.1 <> na Primary Assembly 610657 na scaffold_114 unplaced-scaffold na na JBLUSR010000102.1 <> na Primary Assembly 122000 na scaffold_104 unplaced-scaffold na na JBLUSR010000103.1 <> na Primary Assembly 140097 na scaffold_63 unplaced-scaffold na na JBLUSR010000104.1 <> na Primary Assembly 298319 na scaffold_151 unplaced-scaffold na na JBLUSR010000105.1 <> na Primary Assembly 34352 na scaffold_146 unplaced-scaffold na na JBLUSR010000106.1 <> na Primary Assembly 51081 na scaffold_121 unplaced-scaffold na na JBLUSR010000107.1 <> na Primary Assembly 108041 na scaffold_98 unplaced-scaffold na na JBLUSR010000108.1 <> na Primary Assembly 165116 na scaffold_34 unplaced-scaffold na na JBLUSR010000109.1 <> na Primary Assembly 756000 na scaffold_32 unplaced-scaffold na na JBLUSR010000111.1 <> na Primary Assembly 910475 na scaffold_35 unplaced-scaffold na na JBLUSR010000112.1 <> na Primary Assembly 690986 na scaffold_115 unplaced-scaffold na na JBLUSR010000113.1 <> na Primary Assembly 120782 na scaffold_105 unplaced-scaffold na na JBLUSR010000114.1 <> na Primary Assembly 139000 na scaffold_141 unplaced-scaffold na na JBLUSR010000115.1 <> na Primary Assembly 62947 na scaffold_130 unplaced-scaffold na na JBLUSR010000116.1 <> na Primary Assembly 78724 na scaffold_126 unplaced-scaffold na na JBLUSR010000117.1 <> na Primary Assembly 97000 na scaffold_88 unplaced-scaffold na na JBLUSR010000118.1 <> na Primary Assembly 205000 na scaffold_52 unplaced-scaffold na na JBLUSR010000119.1 <> na Primary Assembly 376441 na scaffold_55 unplaced-scaffold na na JBLUSR010000120.1 <> na Primary Assembly 359511 na scaffold_123 unplaced-scaffold na na JBLUSR010000121.1 <> na Primary Assembly 103535 na scaffold_143 unplaced-scaffold na na JBLUSR010000122.1 <> na Primary Assembly 52000 na scaffold_68 unplaced-scaffold na na JBLUSR010000124.1 <> na Primary Assembly 280518 na scaffold_54 unplaced-scaffold na na JBLUSR010000125.1 <> na Primary Assembly 368916 na scaffold_108 unplaced-scaffold na na JBLUSR010000127.1 <> na Primary Assembly 135000 na scaffold_118 unplaced-scaffold na na JBLUSR010000128.1 <> na Primary Assembly 112067 na scaffold_119 unplaced-scaffold na na JBLUSR010000129.1 <> na Primary Assembly 112000 na scaffold_109 unplaced-scaffold na na JBLUSR010000130.1 <> na Primary Assembly 134102 na scaffold_93 unplaced-scaffold na na JBLUSR010000131.1 <> na Primary Assembly 175000 na scaffold_59 unplaced-scaffold na na JBLUSR010000132.1 <> na Primary Assembly 322077 na scaffold_44 unplaced-scaffold na na JBLUSR010000133.1 <> na Primary Assembly 517585 na scaffold_86 unplaced-scaffold na na JBLUSR010000135.1 <> na Primary Assembly 209192 na scaffold_147 unplaced-scaffold na na JBLUSR010000136.1 <> na Primary Assembly 51000 na scaffold_79 unplaced-scaffold na na JBLUSR010000137.1 <> na Primary Assembly 226409 na scaffold_66 unplaced-scaffold na na JBLUSR010000139.1 <> na Primary Assembly 285486 na scaffold_127 unplaced-scaffold na na JBLUSR010000140.1 <> na Primary Assembly 91000 na scaffold_42 unplaced-scaffold na na JBLUSR010000141.1 <> na Primary Assembly 559871 na scaffold_45 unplaced-scaffold na na JBLUSR010000142.1 <> na Primary Assembly 516191 na scaffold_91 unplaced-scaffold na na JBLUSR010000143.1 <> na Primary Assembly 186278 na scaffold_90 unplaced-scaffold na na JBLUSR010000144.1 <> na Primary Assembly 189449 na scaffold_49 unplaced-scaffold na na JBLUSR010000145.1 <> na Primary Assembly 457121 na scaffold_75 unplaced-scaffold na na JBLUSR010000146.1 <> na Primary Assembly 241000 na scaffold_72 unplaced-scaffold na na JBLUSR010000147.1 <> na Primary Assembly 270000 na scaffold_139 unplaced-scaffold na na JBLUSR010000148.1 <> na Primary Assembly 65000 na scaffold_138 unplaced-scaffold na na JBLUSR010000149.1 <> na Primary Assembly 65752 na scaffold_74 unplaced-scaffold na na JBLUSR010000150.1 <> na Primary Assembly 253225 na scaffold_97 unplaced-scaffold na na JBLUSR010000151.1 <> na Primary Assembly 166019 na atg000005l_rc_rotated assembled-molecule MT Mitochondrion CM107687.1 <> na non-nuclear 16489 na