The repeat files provided for this assembly were generated using RepeatMasker.
  Smit, AFA, Hubley, R & Green, P.,
  RepeatMasker version 4.1.4
  1996-2010 <http://www.repeatmasker.org>.

VERSION:
RepeatMasker version 4.1.7-p1
Search Engine: NCBI/RMBLAST [ 2.14.1+ ]

Using Master RepeatMasker Database: /hive/data/outside/RepeatMasker/RepeatMasker-4.1.7-p1/Libraries/famdb
  Title    : Dfam
  Version  : 3.8
  Date     : 2023-11-14
  Families : 3,574,116

Species/Taxa Search:
  Trichechus [NCBI Taxonomy ID: 9776]
  Lineage: root;cellular organisms;Eukaryota;Opisthokonta;Metazoa;
           Eumetazoa;Bilateria;Deuterostomia;Chordata;
           Craniata <chordates>;Vertebrata <vertebrates>;
           Gnathostomata <vertebrates>;Teleostomi;Euteleostomi;
           Sarcopterygii;Dipnotetrapodomorpha;Tetrapoda;Amniota;
           Mammalia;Theria <mammals>;Eutheria;Afrotheria;Sirenia
Including only curated families:
  739 families in ancestor taxa; 80 lineage-specific families

RepeatMasker version 4.1.7-p1
# RMRBMeta.embl library version: CC   RELEASE 20181026;                                            *
# RepeatMasker engine: -engine rmblast -pa 1
# RepeatMasker library options: -species 'Trichechus'

PARAMETERS:
/hive/data/outside/RepeatMasker/RepeatMasker-4.1.7-p1/RepeatMasker -engine rmblast -pa 1 -align -species 'Trichechus'