# Assembly name: mPanOnc1 haplotype 1 # Organism name: Panthera onca (jaguar) # Isolate: mPanOnc1 # Sex: male # Taxid: 9690 # BioSample: SAMN44524170 # BioProject: PRJNA1180582 # Submitter: Genomics of Brazilian Biodiversity # Date: 2025-01-08 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBKGDW01 # Assembly method: Pipeasm v. 1.0 # Expected final version: yes # Genome coverage: 69x # Sequencing technology: PacBio Revio # GenBank assembly accession: GCA_046562885.1 # Linked assembly: GCA_046562875.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_046562915.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name h1.Chr1 assembled-molecule 1 Chromosome CM102058.1 <> na Primary Assembly 241924008 na h1.Chr2 assembled-molecule 2 Chromosome CM102059.1 <> na Primary Assembly 219838525 na h1.Chr3 assembled-molecule 3 Chromosome CM102060.1 <> na Primary Assembly 205771557 na h1.Chr4 assembled-molecule 4 Chromosome CM102061.1 <> na Primary Assembly 168529732 na h1.Chr5 assembled-molecule 5 Chromosome CM102062.1 <> na Primary Assembly 158556951 na h1.Chr6 assembled-molecule 6 Chromosome CM102063.1 <> na Primary Assembly 151524317 na h1.Chr7 assembled-molecule 7 Chromosome CM102064.1 <> na Primary Assembly 148304554 na h1.Chr8 assembled-molecule 8 Chromosome CM102065.1 <> na Primary Assembly 141644557 na h1.Chr9 assembled-molecule 9 Chromosome CM102066.1 <> na Primary Assembly 139607418 na h1.Chr10 assembled-molecule 10 Chromosome CM102067.1 <> na Primary Assembly 115488741 na h1.Chr11 assembled-molecule 11 Chromosome CM102068.1 <> na Primary Assembly 94025792 na h1.Chr12 assembled-molecule 12 Chromosome CM102069.1 <> na Primary Assembly 94776178 na h1.Chr13 assembled-molecule 13 Chromosome CM102070.1 <> na Primary Assembly 88346058 na h1.Chr14 assembled-molecule 14 Chromosome CM102071.1 <> na Primary Assembly 83236566 na h1.Chr15 assembled-molecule 15 Chromosome CM102072.1 <> na Primary Assembly 72614540 na h1.Chr16 assembled-molecule 16 Chromosome CM102073.1 <> na Primary Assembly 62745751 na h1.Chr17 assembled-molecule 17 Chromosome CM102074.1 <> na Primary Assembly 59583211 na h1.Chr18 assembled-molecule 18 Chromosome CM102075.1 <> na Primary Assembly 41820253 na h1.Chr16_ul_1 unlocalized-scaffold 16 Chromosome JBKGDW010000019.1 <> na Primary Assembly 2167275 na h1.Chr16_ul_2 unlocalized-scaffold 16 Chromosome JBKGDW010000020.1 <> na Primary Assembly 1458352 na h1.Chr16_ul_3 unlocalized-scaffold 16 Chromosome JBKGDW010000021.1 <> na Primary Assembly 1144455 na h1.Chr16_ul_4 unlocalized-scaffold 16 Chromosome JBKGDW010000022.1 <> na Primary Assembly 1115866 na h1.Chr16_ul_5 unlocalized-scaffold 16 Chromosome JBKGDW010000023.1 <> na Primary Assembly 1007799 na h1.Chr16_ul_6 unlocalized-scaffold 16 Chromosome JBKGDW010000024.1 <> na Primary Assembly 682137 na h1.Chr16_ul_7 unlocalized-scaffold 16 Chromosome JBKGDW010000025.1 <> na Primary Assembly 561391 na h1.Chr16_ul_8 unlocalized-scaffold 16 Chromosome JBKGDW010000026.1 <> na Primary Assembly 555902 na h1.Chr16_ul_9 unlocalized-scaffold 16 Chromosome JBKGDW010000027.1 <> na Primary Assembly 503148 na h1.Chr16_ul_10 unlocalized-scaffold 16 Chromosome JBKGDW010000028.1 <> na Primary Assembly 392869 na h1.Chr16_ul_11 unlocalized-scaffold 16 Chromosome JBKGDW010000029.1 <> na Primary Assembly 323849 na h1.Chr16_ul_12 unlocalized-scaffold 16 Chromosome JBKGDW010000030.1 <> na Primary Assembly 311305 na h1.Chr16_ul_14 unlocalized-scaffold 16 Chromosome JBKGDW010000031.1 <> na Primary Assembly 236789 na h1.Chr16_ul_15 unlocalized-scaffold 16 Chromosome JBKGDW010000032.1 <> na Primary Assembly 230698 na h1.Chr16_ul_16 unlocalized-scaffold 16 Chromosome JBKGDW010000033.1 <> na Primary Assembly 138668 na h1.Chr16_ul_17 unlocalized-scaffold 16 Chromosome JBKGDW010000034.1 <> na Primary Assembly 125266 na h1.Chr16_ul_18 unlocalized-scaffold 16 Chromosome JBKGDW010000035.1 <> na Primary Assembly 84131 na h1.Chr16_ul_19 unlocalized-scaffold 16 Chromosome JBKGDW010000036.1 <> na Primary Assembly 82827 na h1.Chr16_ul_20 unlocalized-scaffold 16 Chromosome JBKGDW010000037.1 <> na Primary Assembly 80392 na h1.Chr16_ul_21 unlocalized-scaffold 16 Chromosome JBKGDW010000038.1 <> na Primary Assembly 78248 na h1.Chr16_ul_22 unlocalized-scaffold 16 Chromosome JBKGDW010000039.1 <> na Primary Assembly 77451 na h1.Chr16_ul_23 unlocalized-scaffold 16 Chromosome JBKGDW010000040.1 <> na Primary Assembly 75355 na h1.Chr16_ul_24 unlocalized-scaffold 16 Chromosome JBKGDW010000041.1 <> na Primary Assembly 71640 na h1.Chr18_ul_1 unlocalized-scaffold 18 Chromosome JBKGDW010000042.1 <> na Primary Assembly 315074 na h1.h1tg000068l_path unplaced-scaffold na na JBKGDW010000043.1 <> na Primary Assembly 176218 na h1.h1tg000095c_path unplaced-scaffold na na JBKGDW010000044.1 <> na Primary Assembly 64723 na h1.h1tg000126l_path unplaced-scaffold na na JBKGDW010000045.1 <> na Primary Assembly 33235 na h1.h1tg000135l_path unplaced-scaffold na na JBKGDW010000046.1 <> na Primary Assembly 41838 na h1.h1tg000137l_path unplaced-scaffold na na JBKGDW010000047.1 <> na Primary Assembly 130398 na h1.h1tg000146l_path unplaced-scaffold na na JBKGDW010000048.1 <> na Primary Assembly 31335 na h1.h1tg000153l_path unplaced-scaffold na na JBKGDW010000049.1 <> na Primary Assembly 17077 na h1.h1tg000162l_path unplaced-scaffold na na JBKGDW010000050.1 <> na Primary Assembly 22926 na h1.h1tg000168l_path unplaced-scaffold na na JBKGDW010000051.1 <> na Primary Assembly 87859 na h1.h1tg000174l_path unplaced-scaffold na na JBKGDW010000052.1 <> na Primary Assembly 60535 na h1.h1tg000175l_path unplaced-scaffold na na JBKGDW010000053.1 <> na Primary Assembly 118485 na h1.h1tg000176l_path unplaced-scaffold na na JBKGDW010000054.1 <> na Primary Assembly 49354 na h1.h1tg000177l_path unplaced-scaffold na na JBKGDW010000055.1 <> na Primary Assembly 24300 na h1.h1tg000186c_path unplaced-scaffold na na JBKGDW010000056.1 <> na Primary Assembly 60613 na h1.h1tg000188l_path unplaced-scaffold na na JBKGDW010000057.1 <> na Primary Assembly 16147 na h1.h1tg000198l_path unplaced-scaffold na na JBKGDW010000058.1 <> na Primary Assembly 30442 na h1.h1tg000199l_path unplaced-scaffold na na JBKGDW010000059.1 <> na Primary Assembly 25640 na h1.h1tg000202l_path unplaced-scaffold na na JBKGDW010000060.1 <> na Primary Assembly 108723 na h1.h1tg000203l_path unplaced-scaffold na na JBKGDW010000061.1 <> na Primary Assembly 20414 na h1.h1tg000210l_path unplaced-scaffold na na JBKGDW010000062.1 <> na Primary Assembly 18709 na h1.h1tg000211l_path unplaced-scaffold na na JBKGDW010000063.1 <> na Primary Assembly 30239 na h1.h1tg000212l_path unplaced-scaffold na na JBKGDW010000064.1 <> na Primary Assembly 29354 na h1.h1tg000213l_path unplaced-scaffold na na JBKGDW010000065.1 <> na Primary Assembly 30954 na h1.h1tg000215l_path unplaced-scaffold na na JBKGDW010000066.1 <> na Primary Assembly 48066 na h1.h1tg000216l_path unplaced-scaffold na na JBKGDW010000067.1 <> na Primary Assembly 28201 na h1.h1tg000218l_path unplaced-scaffold na na JBKGDW010000068.1 <> na Primary Assembly 47818 na h1.h1tg000219l_path unplaced-scaffold na na JBKGDW010000069.1 <> na Primary Assembly 101362 na h1.h1tg000220l_path unplaced-scaffold na na JBKGDW010000070.1 <> na Primary Assembly 28590 na h1.h1tg000221l_path unplaced-scaffold na na JBKGDW010000071.1 <> na Primary Assembly 54673 na h1.h1tg000222l_path unplaced-scaffold na na JBKGDW010000072.1 <> na Primary Assembly 44801 na h1.h1tg000227c_path unplaced-scaffold na na JBKGDW010000073.1 <> na Primary Assembly 162835 na h1.h1tg000228l_path unplaced-scaffold na na JBKGDW010000074.1 <> na Primary Assembly 114242 na h1.h1tg000229l_path unplaced-scaffold na na JBKGDW010000075.1 <> na Primary Assembly 56031 na h1.h1tg000232l_path unplaced-scaffold na na JBKGDW010000076.1 <> na Primary Assembly 26012 na h1.h1tg000233l_path unplaced-scaffold na na JBKGDW010000077.1 <> na Primary Assembly 51961 na h1.h1tg000235l_path unplaced-scaffold na na JBKGDW010000078.1 <> na Primary Assembly 70942 na h1.h1tg000238l_path unplaced-scaffold na na JBKGDW010000079.1 <> na Primary Assembly 93179 na h1.h1tg000242l_path unplaced-scaffold na na JBKGDW010000080.1 <> na Primary Assembly 58477 na h1.h1tg000244l_path unplaced-scaffold na na JBKGDW010000081.1 <> na Primary Assembly 19685 na h1.h1tg000246l_path unplaced-scaffold na na JBKGDW010000082.1 <> na Primary Assembly 34982 na h1.h1tg000247c_path unplaced-scaffold na na JBKGDW010000083.1 <> na Primary Assembly 37251 na h1.h1tg000248l_path unplaced-scaffold na na JBKGDW010000084.1 <> na Primary Assembly 17083 na h1.h1tg000250l_path unplaced-scaffold na na JBKGDW010000085.1 <> na Primary Assembly 28557 na h1.h1tg000251l_path unplaced-scaffold na na JBKGDW010000086.1 <> na Primary Assembly 17716 na h1.h1tg000252l_path unplaced-scaffold na na JBKGDW010000087.1 <> na Primary Assembly 29132 na h1.h1tg000253l_path unplaced-scaffold na na JBKGDW010000088.1 <> na Primary Assembly 21491 na h1.h1tg000254l_path unplaced-scaffold na na JBKGDW010000089.1 <> na Primary Assembly 19485 na h1.h1tg000256c_path unplaced-scaffold na na JBKGDW010000090.1 <> na Primary Assembly 37697 na h1.h1tg000259l_path unplaced-scaffold na na JBKGDW010000091.1 <> na Primary Assembly 57587 na h1.h1tg000260l_path unplaced-scaffold na na JBKGDW010000092.1 <> na Primary Assembly 29471 na h1.h1tg000261l_path unplaced-scaffold na na JBKGDW010000093.1 <> na Primary Assembly 21849 na h1.h1tg000262l_path unplaced-scaffold na na JBKGDW010000094.1 <> na Primary Assembly 15670 na h1.h1tg000265l_path unplaced-scaffold na na JBKGDW010000095.1 <> na Primary Assembly 17231 na h1.h1tg000266l_path unplaced-scaffold na na JBKGDW010000096.1 <> na Primary Assembly 96768 na h1.h1tg000267l_path unplaced-scaffold na na JBKGDW010000097.1 <> na Primary Assembly 23567 na h1.h1tg000268l_path unplaced-scaffold na na JBKGDW010000098.1 <> na Primary Assembly 29524 na h1.h1tg000269l_path unplaced-scaffold na na JBKGDW010000099.1 <> na Primary Assembly 27662 na h1.h1tg000270l_path unplaced-scaffold na na JBKGDW010000100.1 <> na Primary Assembly 26323 na h1.h1tg000271l_path unplaced-scaffold na na JBKGDW010000101.1 <> na Primary Assembly 21110 na h1.h1tg000273l_path unplaced-scaffold na na JBKGDW010000102.1 <> na Primary Assembly 17105 na h1.h1tg000274l_path unplaced-scaffold na na JBKGDW010000103.1 <> na Primary Assembly 17090 na h1.h1tg000275l_path unplaced-scaffold na na JBKGDW010000104.1 <> na Primary Assembly 28958 na h1.h1tg000276l_path unplaced-scaffold na na JBKGDW010000105.1 <> na Primary Assembly 17703 na h1.h1tg000277l_path unplaced-scaffold na na JBKGDW010000106.1 <> na Primary Assembly 62214 na h1.h1tg000278l_path unplaced-scaffold na na JBKGDW010000107.1 <> na Primary Assembly 17175 na h1.h1tg000279l_path unplaced-scaffold na na JBKGDW010000108.1 <> na Primary Assembly 17386 na h1.h1tg000280l_path unplaced-scaffold na na JBKGDW010000109.1 <> na Primary Assembly 30815 na h1.h1tg000281l_path unplaced-scaffold na na JBKGDW010000110.1 <> na Primary Assembly 16161 na h1.h1tg000282l_path unplaced-scaffold na na JBKGDW010000111.1 <> na Primary Assembly 23081 na h1.h1tg000283l_path unplaced-scaffold na na JBKGDW010000112.1 <> na Primary Assembly 17029 na h1.h1tg000284l_path unplaced-scaffold na na JBKGDW010000113.1 <> na Primary Assembly 29493 na h1.h1tg000285l_path unplaced-scaffold na na JBKGDW010000114.1 <> na Primary Assembly 25116 na h1.h1tg000286l_path unplaced-scaffold na na JBKGDW010000115.1 <> na Primary Assembly 19634 na