# Assembly name: ASM4374857v1 # Organism name: Rhinolophus perniger lanosus (northern woolly horseshoe bat) # Isolate: 20210929_DDc # Sex: male # Taxid: 3030661 # BioSample: SAMN33438666 # BioProject: PRJNA937181 # Submitter: Bat1K # Date: 2024-10-24 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARWAW01 # Assembly method: HiFiasm v. 0.13; purge-dups v. 1.2.3; bwa-mem v. 0.7.17; salsa v. 2.2; pbmm2 v. 1.4; deepvariant v. 1.2.0; bcftools v. 1.12 # Expected final version: yes # Genome coverage: 27x # Sequencing technology: PacBio Sequel; Illumina NovaSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_043748575.1 # Linked assembly: GCA_043748905.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_043748585.1 Primary Assembly ## GCA_043748595.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name manual_scaffold_6 assembled-molecule 1 Chromosome CM093129.1 <> na Primary Assembly 232970026 na manual_scaffold_1 assembled-molecule 2 Chromosome CM093130.1 <> na Primary Assembly 222114834 na manual_scaffold_2 assembled-molecule 3 Chromosome CM093131.1 <> na Primary Assembly 210833328 na manual_scaffold_8 assembled-molecule 4 Chromosome CM093132.1 <> na Primary Assembly 200495699 na manual_scaffold_3 assembled-molecule 5 Chromosome CM093133.1 <> na Primary Assembly 196844340 na manual_scaffold_4 assembled-molecule 6 Chromosome CM093134.1 <> na Primary Assembly 154900566 na manual_scaffold_11 assembled-molecule 7 Chromosome CM093135.1 <> na Primary Assembly 143297498 na manual_scaffold_7 assembled-molecule 8 Chromosome CM093136.1 <> na Primary Assembly 122917854 na manual_scaffold_5 assembled-molecule 9 Chromosome CM093137.1 <> na Primary Assembly 116940113 na manual_scaffold_10 assembled-molecule 10 Chromosome CM093138.1 <> na Primary Assembly 116508404 na manual_scaffold_12 assembled-molecule 11 Chromosome CM093139.1 <> na Primary Assembly 81662086 na manual_scaffold_15 assembled-molecule 12 Chromosome CM093140.1 <> na Primary Assembly 71799658 na manual_scaffold_16 assembled-molecule 13 Chromosome CM093141.1 <> na Primary Assembly 58437153 na manual_scaffold_14 assembled-molecule 14 Chromosome CM093142.1 <> na Primary Assembly 45758833 na manual_scaffold_13 assembled-molecule 15 Chromosome CM093143.1 <> na Primary Assembly 45470270 na manual_scaffold_9 assembled-molecule X Chromosome CM093144.1 <> na Primary Assembly 83656594 na manual_scaffold_17 assembled-molecule Y Chromosome CM093145.1 <> na Primary Assembly 42614067 na manual_scaffold_18 unplaced-scaffold na na JARWAW010000018.1 <> na Primary Assembly 7858239 na manual_scaffold_19 unplaced-scaffold na na JARWAW010000019.1 <> na Primary Assembly 4054980 na manual_scaffold_20 unplaced-scaffold na na JARWAW010000020.1 <> na Primary Assembly 4045292 na manual_scaffold_21 unplaced-scaffold na na JARWAW010000021.1 <> na Primary Assembly 3738723 na manual_scaffold_22 unplaced-scaffold na na JARWAW010000022.1 <> na Primary Assembly 2636923 na manual_scaffold_23 unplaced-scaffold na na JARWAW010000023.1 <> na Primary Assembly 2057826 na manual_scaffold_24 unplaced-scaffold na na JARWAW010000024.1 <> na Primary Assembly 1285022 na manual_scaffold_25 unplaced-scaffold na na JARWAW010000025.1 <> na Primary Assembly 1134700 na manual_scaffold_26 unplaced-scaffold na na JARWAW010000026.1 <> na Primary Assembly 1015867 na manual_scaffold_27 unplaced-scaffold na na JARWAW010000027.1 <> na Primary Assembly 889257 na manual_scaffold_28 unplaced-scaffold na na JARWAW010000028.1 <> na Primary Assembly 813628 na manual_scaffold_29 unplaced-scaffold na na JARWAW010000029.1 <> na Primary Assembly 791124 na manual_scaffold_30 unplaced-scaffold na na JARWAW010000030.1 <> na Primary Assembly 742398 na manual_scaffold_31 unplaced-scaffold na na JARWAW010000031.1 <> na Primary Assembly 731732 na manual_scaffold_32 unplaced-scaffold na na JARWAW010000032.1 <> na Primary Assembly 722869 na manual_scaffold_33 unplaced-scaffold na na JARWAW010000033.1 <> na Primary Assembly 689434 na manual_scaffold_34 unplaced-scaffold na na JARWAW010000034.1 <> na Primary Assembly 606853 na manual_scaffold_35 unplaced-scaffold na na JARWAW010000035.1 <> na Primary Assembly 471222 na manual_scaffold_36 unplaced-scaffold na na JARWAW010000036.1 <> na Primary Assembly 451511 na manual_scaffold_37 unplaced-scaffold na na JARWAW010000037.1 <> na Primary Assembly 446809 na manual_scaffold_38 unplaced-scaffold na na JARWAW010000038.1 <> na Primary Assembly 378992 na manual_scaffold_39 unplaced-scaffold na na JARWAW010000039.1 <> na Primary Assembly 374026 na manual_scaffold_40 unplaced-scaffold na na JARWAW010000040.1 <> na Primary Assembly 285259 na manual_scaffold_41 unplaced-scaffold na na JARWAW010000041.1 <> na Primary Assembly 251882 na manual_scaffold_42 unplaced-scaffold na na JARWAW010000042.1 <> na Primary Assembly 212806 na manual_scaffold_43 unplaced-scaffold na na JARWAW010000043.1 <> na Primary Assembly 168905 na manual_scaffold_44 unplaced-scaffold na na JARWAW010000044.1 <> na Primary Assembly 143061 na manual_scaffold_45 unplaced-scaffold na na JARWAW010000045.1 <> na Primary Assembly 141928 na manual_scaffold_46 unplaced-scaffold na na JARWAW010000046.1 <> na Primary Assembly 137005 na manual_scaffold_47 unplaced-scaffold na na JARWAW010000047.1 <> na Primary Assembly 120300 na manual_scaffold_48 unplaced-scaffold na na JARWAW010000048.1 <> na Primary Assembly 115359 na manual_scaffold_49 unplaced-scaffold na na JARWAW010000049.1 <> na Primary Assembly 113518 na manual_scaffold_50 unplaced-scaffold na na JARWAW010000050.1 <> na Primary Assembly 88467 na manual_scaffold_51 unplaced-scaffold na na JARWAW010000051.1 <> na Primary Assembly 80102 na manual_scaffold_52 unplaced-scaffold na na JARWAW010000052.1 <> na Primary Assembly 62861 na manual_scaffold_53 unplaced-scaffold na na JARWAW010000053.1 <> na Primary Assembly 53685 na manual_scaffold_54 unplaced-scaffold na na JARWAW010000054.1 <> na Primary Assembly 48152 na manual_scaffold_55 unplaced-scaffold na na JARWAW010000055.1 <> na Primary Assembly 47228 na manual_scaffold_56 unplaced-scaffold na na JARWAW010000056.1 <> na Primary Assembly 45240 na manual_scaffold_58 unplaced-scaffold na na JARWAW010000057.1 <> na Primary Assembly 37505 na manual_scaffold_59 unplaced-scaffold na na JARWAW010000058.1 <> na Primary Assembly 36023 na manual_scaffold_60 unplaced-scaffold na na JARWAW010000059.1 <> na Primary Assembly 35322 na manual_scaffold_61 unplaced-scaffold na na JARWAW010000060.1 <> na Primary Assembly 33575 na manual_scaffold_62 unplaced-scaffold na na JARWAW010000061.1 <> na Primary Assembly 32983 na manual_scaffold_63 unplaced-scaffold na na JARWAW010000062.1 <> na Primary Assembly 20462 na manual_scaffold_64 unplaced-scaffold na na JARWAW010000063.1 <> na Primary Assembly 19151 na manual_scaffold_65 unplaced-scaffold na na JARWAW010000064.1 <> na Primary Assembly 17209 na manual_scaffold_66 unplaced-scaffold na na JARWAW010000065.1 <> na Primary Assembly 12249 na ptg000075l_rc_rotated assembled-molecule MT Mitochondrion CM093170.1 <> na non-nuclear 16937 na