# Assembly name: HG00544_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG00544 # Sex: female # Taxid: 9606 # BioSample: SAMN26237491 # BioProject: PRJNA1156982 # Submitter: UCSC Genomics Institute # Date: 2024-09-20 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHIIN01 # Assembly method: Hifiasm v. 0.19.9 # Expected final version: no # Genome coverage: 67x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042076565.1 # Linked assembly: GCA_042076675.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042076615.1 Primary Assembly ## GCA_042076645.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG00544#2#h2tg000004l assembled-molecule 1 Chromosome CM089383.1 <> na Primary Assembly 242187752 na HG00544#2#h2tg000009l assembled-molecule 2 Chromosome CM089384.1 <> na Primary Assembly 242704062 na HG00544#2#h2tg000007l assembled-molecule 3 Chromosome CM089385.1 <> na Primary Assembly 200283781 na HG00544#2#h2tg000020l assembled-molecule 5 Chromosome CM089386.1 <> na Primary Assembly 182312594 na HG00544#2#h2tg000003l assembled-molecule 6 Chromosome CM089387.1 <> na Primary Assembly 171646311 na HG00544#2#h2tg000002l assembled-molecule 7 Chromosome CM089388.1 <> na Primary Assembly 161202545 na HG00544#2#h2tg000005l assembled-molecule 8 Chromosome CM089389.1 <> na Primary Assembly 146053158 na HG00544#2#h2tg000001l assembled-molecule 9 Chromosome CM089390.1 <> na Primary Assembly 139361540 na HG00544#2#h2tg000019l assembled-molecule 11 Chromosome CM089391.1 <> na Primary Assembly 133905309 na HG00544#2#h2tg000011l assembled-molecule 12 Chromosome CM089392.1 <> na Primary Assembly 134390062 na HG00544#2#h2tg000014l assembled-molecule 16 Chromosome CM089393.1 <> na Primary Assembly 89177463 na HG00544#2#h2tg000031l assembled-molecule 19 Chromosome CM089394.1 <> na Primary Assembly 62474007 na HG00544#2#h2tg000027l assembled-molecule 22 Chromosome CM089395.1 <> na Primary Assembly 50775831 na HG00544#2#h2tg000010l assembled-molecule X Chromosome CM089396.1 <> na Primary Assembly 154730945 na HG00544#2#h2tg000006l unplaced-scaffold na na JBHIIN010000004.1 <> na Primary Assembly 44070838 na HG00544#2#h2tg000008l unplaced-scaffold na na JBHIIN010000006.1 <> na Primary Assembly 95784222 na HG00544#2#h2tg000013l unplaced-scaffold na na JBHIIN010000009.1 <> na Primary Assembly 135353215 na HG00544#2#h2tg000017l unplaced-scaffold na na JBHIIN010000011.1 <> na Primary Assembly 51471484 na HG00544#2#h2tg000018l unplaced-scaffold na na JBHIIN010000012.1 <> na Primary Assembly 103840971 na HG00544#2#h2tg000022l unplaced-scaffold na na JBHIIN010000014.1 <> na Primary Assembly 29865467 na HG00544#2#h2tg000024l unplaced-scaffold na na JBHIIN010000015.1 <> na Primary Assembly 96644554 na HG00544#2#h2tg000028l unplaced-scaffold na na JBHIIN010000016.1 <> na Primary Assembly 1528790 na HG00544#2#h2tg000033l unplaced-scaffold na na JBHIIN010000018.1 <> na Primary Assembly 1245908 na HG00544#2#h2tg000034l unplaced-scaffold na na JBHIIN010000019.1 <> na Primary Assembly 298034 na HG00544#2#h2tg000035l unplaced-scaffold na na JBHIIN010000020.1 <> na Primary Assembly 2840136 na HG00544#2#h2tg000037l unplaced-scaffold na na JBHIIN010000021.1 <> na Primary Assembly 65230 na HG00544#2#h2tg000038l unplaced-scaffold na na JBHIIN010000022.1 <> na Primary Assembly 905415 na HG00544#2#h2tg000043l unplaced-scaffold na na JBHIIN010000023.1 <> na Primary Assembly 286018 na HG00544#2#h2tg000045l unplaced-scaffold na na JBHIIN010000024.1 <> na Primary Assembly 230142 na HG00544#2#h2tg000047l unplaced-scaffold na na JBHIIN010000025.1 <> na Primary Assembly 333777 na HG00544#2#h2tg000050l unplaced-scaffold na na JBHIIN010000026.1 <> na Primary Assembly 114850 na HG00544#2#h2tg000054l unplaced-scaffold na na JBHIIN010000027.1 <> na Primary Assembly 117589 na HG00544#2#h2tg000057l unplaced-scaffold na na JBHIIN010000028.1 <> na Primary Assembly 161101 na HG00544#2#h2tg000058l unplaced-scaffold na na JBHIIN010000029.1 <> na Primary Assembly 348812 na HG00544#2#h2tg000061l unplaced-scaffold na na JBHIIN010000030.1 <> na Primary Assembly 50145 na HG00544#2#h2tg000074l unplaced-scaffold na na JBHIIN010000031.1 <> na Primary Assembly 50967 na HG00544#2#h2tg000012l unplaced-scaffold na na JBHIIN010000035.1 <> na Primary Assembly 59474084 na HG00544#2#h2tg000015l unplaced-scaffold na na JBHIIN010000036.1 <> na Primary Assembly 36009476 na HG00544#2#h2tg000016l unplaced-scaffold na na JBHIIN010000037.1 <> na Primary Assembly 37257254 na HG00544#2#h2tg000021l unplaced-scaffold na na JBHIIN010000039.1 <> na Primary Assembly 140541327 na HG00544#2#h2tg000023l unplaced-scaffold na na JBHIIN010000040.1 <> na Primary Assembly 25410342 na HG00544#2#h2tg000025l unplaced-scaffold na na JBHIIN010000041.1 <> na Primary Assembly 39707538 na HG00544#2#h2tg000026l unplaced-scaffold na na JBHIIN010000042.1 <> na Primary Assembly 3203864 na HG00544#2#h2tg000029l unplaced-scaffold na na JBHIIN010000044.1 <> na Primary Assembly 4023920 na HG00544#2#h2tg000032l unplaced-scaffold na na JBHIIN010000045.1 <> na Primary Assembly 1022156 na HG00544#2#h2tg000036l unplaced-scaffold na na JBHIIN010000046.1 <> na Primary Assembly 2220285 na HG00544#2#h2tg000040l unplaced-scaffold na na JBHIIN010000047.1 <> na Primary Assembly 97032 na HG00544#2#h2tg000041l unplaced-scaffold na na JBHIIN010000048.1 <> na Primary Assembly 73809 na HG00544#2#h2tg000042l unplaced-scaffold na na JBHIIN010000049.1 <> na Primary Assembly 264284 na HG00544#2#h2tg000044l unplaced-scaffold na na JBHIIN010000050.1 <> na Primary Assembly 435864 na HG00544#2#h2tg000046l unplaced-scaffold na na JBHIIN010000051.1 <> na Primary Assembly 295936 na HG00544#2#h2tg000048l unplaced-scaffold na na JBHIIN010000052.1 <> na Primary Assembly 234076 na HG00544#2#h2tg000052l unplaced-scaffold na na JBHIIN010000053.1 <> na Primary Assembly 118885 na HG00544#2#h2tg000053l unplaced-scaffold na na JBHIIN010000054.1 <> na Primary Assembly 200807 na HG00544#2#h2tg000055l unplaced-scaffold na na JBHIIN010000055.1 <> na Primary Assembly 88507 na HG00544#2#h2tg000060l unplaced-scaffold na na JBHIIN010000056.1 <> na Primary Assembly 95336 na HG00544#2#h2tg000065l unplaced-scaffold na na JBHIIN010000057.1 <> na Primary Assembly 87530 na HG00544#2#h2tg000067l unplaced-scaffold na na JBHIIN010000058.1 <> na Primary Assembly 56637 na HG00544#2#h2tg000068l unplaced-scaffold na na JBHIIN010000059.1 <> na Primary Assembly 57545 na HG00544#2#h2tg000073l unplaced-scaffold na na JBHIIN010000060.1 <> na Primary Assembly 53683 na HG00544#2#h2tg000076l unplaced-scaffold na na JBHIIN010000061.1 <> na Primary Assembly 66328 na HG00544#2#atg000002l_rc_rotated unlocalized-scaffold MT Mitochondrion JBHIIN010000062.1 <> na non-nuclear 16558 na