# Assembly name: HG00099_hap2_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG00099 # Sex: female # Taxid: 9606 # BioSample: SAMN33758778 # BioProject: PRJNA1156719 # Submitter: UCSC Genomics Institute # Date: 2024-09-19 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHDWP01 # Assembly method: Hifiasm v. 0.19.9 # Expected final version: no # Genome coverage: 74x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042031945.1 # Linked assembly: GCA_042032525.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042032125.1 Primary Assembly ## GCA_042032235.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG00099#2#h2tg000013l assembled-molecule 2 Chromosome CM087358.1 <> na Primary Assembly 242394673 na HG00099#2#h2tg000012l assembled-molecule 4 Chromosome CM087359.1 <> na Primary Assembly 190712855 na HG00099#2#h2tg000003l assembled-molecule 5 Chromosome CM087360.1 <> na Primary Assembly 182895798 na HG00099#2#h2tg000008l assembled-molecule 6 Chromosome CM087361.1 <> na Primary Assembly 173124979 na HG00099#2#h2tg000011l assembled-molecule 7 Chromosome CM087362.1 <> na Primary Assembly 160758125 na HG00099#2#h2tg000009l assembled-molecule 8 Chromosome CM087363.1 <> na Primary Assembly 145921453 na HG00099#2#h2tg000005l assembled-molecule 9 Chromosome CM087364.1 <> na Primary Assembly 135811921 na HG00099#2#h2tg000017l assembled-molecule 10 Chromosome CM087365.1 <> na Primary Assembly 135327199 na HG00099#2#h2tg000006l assembled-molecule 11 Chromosome CM087366.1 <> na Primary Assembly 135116093 na HG00099#2#h2tg000001l assembled-molecule 12 Chromosome CM087367.1 <> na Primary Assembly 132557506 na HG00099#2#h2tg000020l assembled-molecule 16 Chromosome CM087368.1 <> na Primary Assembly 89490538 na HG00099#2#h2tg000014l assembled-molecule 18 Chromosome CM087369.1 <> na Primary Assembly 80141396 na HG00099#2#h2tg000025l assembled-molecule 19 Chromosome CM087370.1 <> na Primary Assembly 62320705 na HG00099#2#h2tg000026l assembled-molecule 20 Chromosome CM087371.1 <> na Primary Assembly 66523265 na HG00099#2#h2tg000010l assembled-molecule 22 Chromosome CM087372.1 <> na Primary Assembly 48790320 na HG00099#2#h2tg000002l unplaced-scaffold na na JBHDWP010000001.1 <> na Primary Assembly 103582026 na HG00099#2#h2tg000004l unplaced-scaffold na na JBHDWP010000003.1 <> na Primary Assembly 108111061 na HG00099#2#h2tg000016l unplaced-scaffold na na JBHDWP010000009.1 <> na Primary Assembly 102192835 na HG00099#2#h2tg000023l unplaced-scaffold na na JBHDWP010000011.1 <> na Primary Assembly 109077715 na HG00099#2#h2tg000027l unplaced-scaffold na na JBHDWP010000014.1 <> na Primary Assembly 95364183 na HG00099#2#h2tg000028l unplaced-scaffold na na JBHDWP010000015.1 <> na Primary Assembly 51415490 na HG00099#2#h2tg000030l unplaced-scaffold na na JBHDWP010000016.1 <> na Primary Assembly 37083528 na HG00099#2#h2tg000031l unplaced-scaffold na na JBHDWP010000017.1 <> na Primary Assembly 40018122 na HG00099#2#h2tg000033l unplaced-scaffold na na JBHDWP010000018.1 <> na Primary Assembly 77059 na HG00099#2#h2tg000034l unplaced-scaffold na na JBHDWP010000019.1 <> na Primary Assembly 819111 na HG00099#2#h2tg000037l unplaced-scaffold na na JBHDWP010000020.1 <> na Primary Assembly 510664 na HG00099#2#h2tg000041l unplaced-scaffold na na JBHDWP010000021.1 <> na Primary Assembly 827443 na HG00099#2#h2tg000044l unplaced-scaffold na na JBHDWP010000022.1 <> na Primary Assembly 1184546 na HG00099#2#h2tg000045l unplaced-scaffold na na JBHDWP010000023.1 <> na Primary Assembly 251385 na HG00099#2#h2tg000049l unplaced-scaffold na na JBHDWP010000024.1 <> na Primary Assembly 141392 na HG00099#2#h2tg000051l unplaced-scaffold na na JBHDWP010000025.1 <> na Primary Assembly 74148 na HG00099#2#h2tg000052l unplaced-scaffold na na JBHDWP010000026.1 <> na Primary Assembly 64322 na HG00099#2#h2tg000053l unplaced-scaffold na na JBHDWP010000027.1 <> na Primary Assembly 89870 na HG00099#2#h2tg000054l unplaced-scaffold na na JBHDWP010000028.1 <> na Primary Assembly 522317 na HG00099#2#h2tg000055l unplaced-scaffold na na JBHDWP010000029.1 <> na Primary Assembly 470889 na HG00099#2#h2tg000058l unplaced-scaffold na na JBHDWP010000030.1 <> na Primary Assembly 325325 na HG00099#2#h2tg000059l unplaced-scaffold na na JBHDWP010000031.1 <> na Primary Assembly 129878 na HG00099#2#h2tg000063l unplaced-scaffold na na JBHDWP010000032.1 <> na Primary Assembly 60794 na HG00099#2#h2tg000064l unplaced-scaffold na na JBHDWP010000033.1 <> na Primary Assembly 292730 na HG00099#2#h2tg000068l unplaced-scaffold na na JBHDWP010000034.1 <> na Primary Assembly 205007 na HG00099#2#h2tg000069l unplaced-scaffold na na JBHDWP010000035.1 <> na Primary Assembly 133496 na HG00099#2#h2tg000071l unplaced-scaffold na na JBHDWP010000036.1 <> na Primary Assembly 431519 na HG00099#2#h2tg000074l unplaced-scaffold na na JBHDWP010000037.1 <> na Primary Assembly 509975 na HG00099#2#h2tg000075l unplaced-scaffold na na JBHDWP010000038.1 <> na Primary Assembly 70122 na HG00099#2#h2tg000079l unplaced-scaffold na na JBHDWP010000039.1 <> na Primary Assembly 85008 na HG00099#2#h2tg000080l unplaced-scaffold na na JBHDWP010000040.1 <> na Primary Assembly 166054 na HG00099#2#h2tg000081l unplaced-scaffold na na JBHDWP010000041.1 <> na Primary Assembly 107032 na HG00099#2#h2tg000083l unplaced-scaffold na na JBHDWP010000042.1 <> na Primary Assembly 149804 na HG00099#2#h2tg000084l unplaced-scaffold na na JBHDWP010000043.1 <> na Primary Assembly 162070 na HG00099#2#h2tg000085l unplaced-scaffold na na JBHDWP010000044.1 <> na Primary Assembly 120541 na HG00099#2#h2tg000086l unplaced-scaffold na na JBHDWP010000045.1 <> na Primary Assembly 177798 na HG00099#2#h2tg000089l unplaced-scaffold na na JBHDWP010000046.1 <> na Primary Assembly 103674 na HG00099#2#h2tg000090l unplaced-scaffold na na JBHDWP010000047.1 <> na Primary Assembly 81550 na HG00099#2#h2tg000091l unplaced-scaffold na na JBHDWP010000048.1 <> na Primary Assembly 96373 na HG00099#2#h2tg000094l unplaced-scaffold na na JBHDWP010000049.1 <> na Primary Assembly 69457 na HG00099#2#h2tg000107l unplaced-scaffold na na JBHDWP010000050.1 <> na Primary Assembly 61334 na HG00099#2#h2tg000007l unplaced-scaffold na na JBHDWP010000053.1 <> na Primary Assembly 93284935 na HG00099#2#h2tg000015l unplaced-scaffold na na JBHDWP010000057.1 <> na Primary Assembly 134147720 na HG00099#2#h2tg000018l unplaced-scaffold na na JBHDWP010000058.1 <> na Primary Assembly 767207 na HG00099#2#h2tg000019l unplaced-scaffold na na JBHDWP010000059.1 <> na Primary Assembly 45503641 na HG00099#2#h2tg000021l unplaced-scaffold na na JBHDWP010000061.1 <> na Primary Assembly 94234348 na HG00099#2#h2tg000022l unplaced-scaffold na na JBHDWP010000062.1 <> na Primary Assembly 3344194 na HG00099#2#h2tg000024l unplaced-scaffold na na JBHDWP010000063.1 <> na Primary Assembly 6560172 na HG00099#2#h2tg000029l unplaced-scaffold na na JBHDWP010000064.1 <> na Primary Assembly 3283129 na HG00099#2#h2tg000032l unplaced-scaffold na na JBHDWP010000065.1 <> na Primary Assembly 3096402 na HG00099#2#h2tg000035l unplaced-scaffold na na JBHDWP010000066.1 <> na Primary Assembly 3063485 na HG00099#2#h2tg000036l unplaced-scaffold na na JBHDWP010000067.1 <> na Primary Assembly 3345742 na HG00099#2#h2tg000038l unplaced-scaffold na na JBHDWP010000068.1 <> na Primary Assembly 651852 na HG00099#2#h2tg000040l unplaced-scaffold na na JBHDWP010000069.1 <> na Primary Assembly 771555 na HG00099#2#h2tg000042l unplaced-scaffold na na JBHDWP010000070.1 <> na Primary Assembly 844345 na HG00099#2#h2tg000043l unplaced-scaffold na na JBHDWP010000071.1 <> na Primary Assembly 724361 na HG00099#2#h2tg000046l unplaced-scaffold na na JBHDWP010000072.1 <> na Primary Assembly 1110010 na HG00099#2#h2tg000047l unplaced-scaffold na na JBHDWP010000073.1 <> na Primary Assembly 610437 na HG00099#2#h2tg000048l unplaced-scaffold na na JBHDWP010000074.1 <> na Primary Assembly 173455 na HG00099#2#h2tg000050l unplaced-scaffold na na JBHDWP010000075.1 <> na Primary Assembly 141126 na HG00099#2#h2tg000056l unplaced-scaffold na na JBHDWP010000076.1 <> na Primary Assembly 117854 na HG00099#2#h2tg000057l unplaced-scaffold na na JBHDWP010000077.1 <> na Primary Assembly 197660 na HG00099#2#h2tg000060l unplaced-scaffold na na JBHDWP010000078.1 <> na Primary Assembly 597480 na HG00099#2#h2tg000061l unplaced-scaffold na na JBHDWP010000079.1 <> na Primary Assembly 193244 na HG00099#2#h2tg000062l unplaced-scaffold na na JBHDWP010000080.1 <> na Primary Assembly 536798 na HG00099#2#h2tg000065l unplaced-scaffold na na JBHDWP010000081.1 <> na Primary Assembly 130206 na HG00099#2#h2tg000066l unplaced-scaffold na na JBHDWP010000082.1 <> na Primary Assembly 137235 na HG00099#2#h2tg000067l unplaced-scaffold na na JBHDWP010000083.1 <> na Primary Assembly 434278 na HG00099#2#h2tg000070l unplaced-scaffold na na JBHDWP010000084.1 <> na Primary Assembly 476183 na HG00099#2#h2tg000072l unplaced-scaffold na na JBHDWP010000085.1 <> na Primary Assembly 428716 na HG00099#2#h2tg000073l unplaced-scaffold na na JBHDWP010000086.1 <> na Primary Assembly 286925 na HG00099#2#h2tg000076l unplaced-scaffold na na JBHDWP010000087.1 <> na Primary Assembly 70316 na HG00099#2#h2tg000077l unplaced-scaffold na na JBHDWP010000088.1 <> na Primary Assembly 522418 na HG00099#2#h2tg000078l unplaced-scaffold na na JBHDWP010000089.1 <> na Primary Assembly 225261 na HG00099#2#h2tg000082l unplaced-scaffold na na JBHDWP010000090.1 <> na Primary Assembly 306492 na HG00099#2#h2tg000087l unplaced-scaffold na na JBHDWP010000091.1 <> na Primary Assembly 79502 na HG00099#2#h2tg000088l unplaced-scaffold na na JBHDWP010000092.1 <> na Primary Assembly 60615 na HG00099#2#h2tg000092l unplaced-scaffold na na JBHDWP010000093.1 <> na Primary Assembly 500858 na HG00099#2#h2tg000095l unplaced-scaffold na na JBHDWP010000094.1 <> na Primary Assembly 66102 na HG00099#2#h2tg000098l unplaced-scaffold na na JBHDWP010000095.1 <> na Primary Assembly 72971 na HG00099#2#h2tg000099l unplaced-scaffold na na JBHDWP010000096.1 <> na Primary Assembly 61488 na HG00099#2#h2tg000100l unplaced-scaffold na na JBHDWP010000097.1 <> na Primary Assembly 79409 na HG00099#2#h2tg000104l unplaced-scaffold na na JBHDWP010000098.1 <> na Primary Assembly 142295 na HG00099#2#atg000003l_rc_rotated unlocalized-scaffold MT Mitochondrion JBHDWP010000099.1 <> na non-nuclear 16569 na