# Assembly name: HG04115_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG04115 # Sex: male # Taxid: 9606 # BioSample: SAMN26267388 # BioProject: PRJNA1156119 # Submitter: UCSC Genomics Institute # Date: 2024-09-19 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHDTG01 # Assembly method: Hifiasm v. 0.19.7 # Expected final version: no # Genome coverage: 69x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042028945.1 # Linked assembly: GCA_042029955.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042029235.1 Primary Assembly ## GCA_042029315.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG04115#2#h2tg000011l assembled-molecule 1 Chromosome CM086763.1 <> na Primary Assembly 255311953 na HG04115#2#h2tg000007l assembled-molecule 2 Chromosome CM086764.1 <> na Primary Assembly 240933056 na HG04115#2#h2tg000008l assembled-molecule 3 Chromosome CM086765.1 <> na Primary Assembly 200574911 na HG04115#2#h2tg000004l assembled-molecule 7 Chromosome CM086766.1 <> na Primary Assembly 163399641 na HG04115#2#h2tg000015l assembled-molecule 8 Chromosome CM086767.1 <> na Primary Assembly 146029202 na HG04115#2#h2tg000005l assembled-molecule 9 Chromosome CM086768.1 <> na Primary Assembly 138188446 na HG04115#2#h2tg000029l assembled-molecule 11 Chromosome CM086769.1 <> na Primary Assembly 134957872 na HG04115#2#h2tg000016l assembled-molecule 12 Chromosome CM086770.1 <> na Primary Assembly 135955142 na HG04115#2#h2tg000021l assembled-molecule 14 Chromosome CM086771.1 <> na Primary Assembly 101869331 na HG04115#2#h2tg000017l assembled-molecule 16 Chromosome CM086772.1 <> na Primary Assembly 92597656 na HG04115#2#h2tg000006l assembled-molecule 19 Chromosome CM086773.1 <> na Primary Assembly 62108435 na HG04115#2#h2tg000020l assembled-molecule 20 Chromosome CM086774.1 <> na Primary Assembly 67029278 na HG04115#2#h2tg000001l unplaced-scaffold na na JBHDTG010000001.1 <> na Primary Assembly 135357399 na HG04115#2#h2tg000002l unplaced-scaffold na na JBHDTG010000002.1 <> na Primary Assembly 98982859 na HG04115#2#h2tg000009l unplaced-scaffold na na JBHDTG010000006.1 <> na Primary Assembly 132042831 na HG04115#2#h2tg000013l unplaced-scaffold na na JBHDTG010000007.1 <> na Primary Assembly 44328436 na HG04115#2#h2tg000019l unplaced-scaffold na na JBHDTG010000011.1 <> na Primary Assembly 48990751 na HG04115#2#h2tg000024l unplaced-scaffold na na JBHDTG010000013.1 <> na Primary Assembly 90728035 na HG04115#2#h2tg000025l unplaced-scaffold na na JBHDTG010000014.1 <> na Primary Assembly 80028143 na HG04115#2#h2tg000032l unplaced-scaffold na na JBHDTG010000015.1 <> na Primary Assembly 3536396 na HG04115#2#h2tg000034l unplaced-scaffold na na JBHDTG010000016.1 <> na Primary Assembly 5266206 na HG04115#2#h2tg000037l unplaced-scaffold na na JBHDTG010000017.1 <> na Primary Assembly 1297092 na HG04115#2#h2tg000041l unplaced-scaffold na na JBHDTG010000018.1 <> na Primary Assembly 286750 na HG04115#2#h2tg000042l unplaced-scaffold na na JBHDTG010000019.1 <> na Primary Assembly 454168 na HG04115#2#h2tg000043l unplaced-scaffold na na JBHDTG010000020.1 <> na Primary Assembly 240205 na HG04115#2#h2tg000052l unplaced-scaffold na na JBHDTG010000021.1 <> na Primary Assembly 242100 na HG04115#2#h2tg000056l unplaced-scaffold na na JBHDTG010000022.1 <> na Primary Assembly 183037 na HG04115#2#h2tg000060l unplaced-scaffold na na JBHDTG010000023.1 <> na Primary Assembly 122546 na HG04115#2#h2tg000061l unplaced-scaffold na na JBHDTG010000024.1 <> na Primary Assembly 132599 na HG04115#2#h2tg000063l unplaced-scaffold na na JBHDTG010000025.1 <> na Primary Assembly 78127 na HG04115#2#h2tg000066l unplaced-scaffold na na JBHDTG010000026.1 <> na Primary Assembly 50409 na HG04115#2#h2tg000070l unplaced-scaffold na na JBHDTG010000027.1 <> na Primary Assembly 198280 na HG04115#2#h2tg000071l unplaced-scaffold na na JBHDTG010000028.1 <> na Primary Assembly 109811 na HG04115#2#h2tg000072l unplaced-scaffold na na JBHDTG010000029.1 <> na Primary Assembly 107588 na HG04115#2#h2tg000074l unplaced-scaffold na na JBHDTG010000030.1 <> na Primary Assembly 198193 na HG04115#2#h2tg000080l unplaced-scaffold na na JBHDTG010000031.1 <> na Primary Assembly 105253 na HG04115#2#h2tg000081l unplaced-scaffold na na JBHDTG010000032.1 <> na Primary Assembly 151970 na HG04115#2#h2tg000082l unplaced-scaffold na na JBHDTG010000033.1 <> na Primary Assembly 329388 na HG04115#2#h2tg000083l unplaced-scaffold na na JBHDTG010000034.1 <> na Primary Assembly 116845 na HG04115#2#h2tg000085l unplaced-scaffold na na JBHDTG010000035.1 <> na Primary Assembly 140588 na HG04115#2#h2tg000091l unplaced-scaffold na na JBHDTG010000036.1 <> na Primary Assembly 92477 na HG04115#2#h2tg000096l unplaced-scaffold na na JBHDTG010000037.1 <> na Primary Assembly 62965 na HG04115#2#h2tg000100l unplaced-scaffold na na JBHDTG010000038.1 <> na Primary Assembly 77990 na HG04115#2#h2tg000103l unplaced-scaffold na na JBHDTG010000039.1 <> na Primary Assembly 68289 na HG04115#2#h2tg000105l unplaced-scaffold na na JBHDTG010000040.1 <> na Primary Assembly 53616 na HG04115#2#h2tg000111l unplaced-scaffold na na JBHDTG010000041.1 <> na Primary Assembly 79709 na HG04115#2#h2tg000113l unplaced-scaffold na na JBHDTG010000042.1 <> na Primary Assembly 80283 na HG04115#2#h2tg000118l unplaced-scaffold na na JBHDTG010000043.1 <> na Primary Assembly 65297 na HG04115#2#h2tg000119l unplaced-scaffold na na JBHDTG010000044.1 <> na Primary Assembly 51689 na HG04115#2#h2tg000122l unplaced-scaffold na na JBHDTG010000045.1 <> na Primary Assembly 61310 na HG04115#2#h2tg000003l unplaced-scaffold na na JBHDTG010000046.1 <> na Primary Assembly 191435180 na HG04115#2#h2tg000010l unplaced-scaffold na na JBHDTG010000049.1 <> na Primary Assembly 60157854 na HG04115#2#h2tg000012l unplaced-scaffold na na JBHDTG010000051.1 <> na Primary Assembly 6179576 na HG04115#2#h2tg000014l unplaced-scaffold na na JBHDTG010000052.1 <> na Primary Assembly 40605367 na HG04115#2#h2tg000018l unplaced-scaffold na na JBHDTG010000053.1 <> na Primary Assembly 112305080 na HG04115#2#h2tg000022l unplaced-scaffold na na JBHDTG010000055.1 <> na Primary Assembly 133831552 na HG04115#2#h2tg000023l unplaced-scaffold na na JBHDTG010000056.1 <> na Primary Assembly 3419613 na HG04115#2#h2tg000026l unplaced-scaffold na na JBHDTG010000057.1 <> na Primary Assembly 23622594 na HG04115#2#h2tg000027l unplaced-scaffold na na JBHDTG010000058.1 <> na Primary Assembly 58121843 na HG04115#2#h2tg000028l unplaced-scaffold na na JBHDTG010000059.1 <> na Primary Assembly 350054 na HG04115#2#h2tg000030l unplaced-scaffold na na JBHDTG010000061.1 <> na Primary Assembly 25200221 na HG04115#2#h2tg000031l unplaced-scaffold na na JBHDTG010000062.1 <> na Primary Assembly 3390742 na HG04115#2#h2tg000033l unplaced-scaffold na na JBHDTG010000063.1 <> na Primary Assembly 4294759 na HG04115#2#h2tg000035l unplaced-scaffold na na JBHDTG010000064.1 <> na Primary Assembly 2783907 na HG04115#2#h2tg000036l unplaced-scaffold na na JBHDTG010000065.1 <> na Primary Assembly 207099 na HG04115#2#h2tg000040l unplaced-scaffold na na JBHDTG010000066.1 <> na Primary Assembly 81414 na HG04115#2#h2tg000045l unplaced-scaffold na na JBHDTG010000067.1 <> na Primary Assembly 193588 na HG04115#2#h2tg000046l unplaced-scaffold na na JBHDTG010000068.1 <> na Primary Assembly 2599029 na HG04115#2#h2tg000047l unplaced-scaffold na na JBHDTG010000069.1 <> na Primary Assembly 447444 na HG04115#2#h2tg000049l unplaced-scaffold na na JBHDTG010000070.1 <> na Primary Assembly 315919 na HG04115#2#h2tg000051l unplaced-scaffold na na JBHDTG010000071.1 <> na Primary Assembly 838314 na HG04115#2#h2tg000053l unplaced-scaffold na na JBHDTG010000072.1 <> na Primary Assembly 136562 na HG04115#2#h2tg000054l unplaced-scaffold na na JBHDTG010000073.1 <> na Primary Assembly 336606 na HG04115#2#h2tg000055l unplaced-scaffold na na JBHDTG010000074.1 <> na Primary Assembly 271718 na HG04115#2#h2tg000057l unplaced-scaffold na na JBHDTG010000075.1 <> na Primary Assembly 124423 na HG04115#2#h2tg000058l unplaced-scaffold na na JBHDTG010000076.1 <> na Primary Assembly 343573 na HG04115#2#h2tg000059l unplaced-scaffold na na JBHDTG010000077.1 <> na Primary Assembly 234816 na HG04115#2#h2tg000062l unplaced-scaffold na na JBHDTG010000078.1 <> na Primary Assembly 1039915 na HG04115#2#h2tg000067l unplaced-scaffold na na JBHDTG010000079.1 <> na Primary Assembly 104139 na HG04115#2#h2tg000068l unplaced-scaffold na na JBHDTG010000080.1 <> na Primary Assembly 59951 na HG04115#2#h2tg000073l unplaced-scaffold na na JBHDTG010000081.1 <> na Primary Assembly 60590 na HG04115#2#h2tg000075l unplaced-scaffold na na JBHDTG010000082.1 <> na Primary Assembly 121765 na HG04115#2#h2tg000076l unplaced-scaffold na na JBHDTG010000083.1 <> na Primary Assembly 72907 na HG04115#2#h2tg000077l unplaced-scaffold na na JBHDTG010000084.1 <> na Primary Assembly 243666 na HG04115#2#h2tg000078l unplaced-scaffold na na JBHDTG010000085.1 <> na Primary Assembly 106674 na HG04115#2#h2tg000086l unplaced-scaffold na na JBHDTG010000086.1 <> na Primary Assembly 171365 na HG04115#2#h2tg000087l unplaced-scaffold na na JBHDTG010000087.1 <> na Primary Assembly 154454 na HG04115#2#h2tg000089l unplaced-scaffold na na JBHDTG010000088.1 <> na Primary Assembly 80125 na HG04115#2#h2tg000094l unplaced-scaffold na na JBHDTG010000089.1 <> na Primary Assembly 59184 na HG04115#2#h2tg000095l unplaced-scaffold na na JBHDTG010000090.1 <> na Primary Assembly 52118 na HG04115#2#h2tg000099l unplaced-scaffold na na JBHDTG010000091.1 <> na Primary Assembly 61268 na HG04115#2#h2tg000102l unplaced-scaffold na na JBHDTG010000092.1 <> na Primary Assembly 69326 na HG04115#2#h2tg000104l unplaced-scaffold na na JBHDTG010000093.1 <> na Primary Assembly 64955 na HG04115#2#h2tg000114l unplaced-scaffold na na JBHDTG010000094.1 <> na Primary Assembly 63857 na HG04115#2#h2tg000115l unplaced-scaffold na na JBHDTG010000095.1 <> na Primary Assembly 59608 na HG04115#2#h2tg000116l unplaced-scaffold na na JBHDTG010000096.1 <> na Primary Assembly 55246 na HG04115#2#h2tg000120l unplaced-scaffold na na JBHDTG010000097.1 <> na Primary Assembly 55353 na HG04115#2#h2tg000131l unplaced-scaffold na na JBHDTG010000098.1 <> na Primary Assembly 57101 na HG04115#2#ptg000001l_rc_rotated unlocalized-scaffold MT Mitochondrion JBHDTG010000099.1 <> na non-nuclear 16569 na