# Assembly name: F344 StmMcwi # Organism name: Rattus norvegicus (Norway rat) # Infraspecific name: strain=F344/Stm # Sex: male # Taxid: 10116 # BioSample: SAMN40217939 # BioProject: PRJNA1082763 # Submitter: University of Kentucky # Date: 2024-08-12 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBFMKR01 # Assembly method: HiFiAsm v. 0.16.1-r375 # Expected final version: yes # Genome coverage: 37.0x # Sequencing technology: PacBio Sequel # GenBank assembly accession: GCA_041222355.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_041222395.1 Primary Assembly ## GCA_041222405.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM083587.1 <> na Primary Assembly 269716788 na chr2 assembled-molecule 2 Chromosome CM083588.1 <> na Primary Assembly 251276188 na chr3 assembled-molecule 3 Chromosome CM083589.1 <> na Primary Assembly 167741852 na chr4 assembled-molecule 4 Chromosome CM083590.1 <> na Primary Assembly 184105475 na chr5 assembled-molecule 5 Chromosome CM083591.1 <> na Primary Assembly 166464357 na chr6 assembled-molecule 6 Chromosome CM083592.1 <> na Primary Assembly 145035524 na chr7 assembled-molecule 7 Chromosome CM083593.1 <> na Primary Assembly 138538352 na chr8 assembled-molecule 8 Chromosome CM083594.1 <> na Primary Assembly 125629200 na chr9 assembled-molecule 9 Chromosome CM083595.1 <> na Primary Assembly 123442713 na chr10 assembled-molecule 10 Chromosome CM083596.1 <> na Primary Assembly 113166367 na chr11 assembled-molecule 11 Chromosome CM083597.1 <> na Primary Assembly 99534835 na chr12 assembled-molecule 12 Chromosome CM083598.1 <> na Primary Assembly 62843441 na chr13 assembled-molecule 13 Chromosome CM083599.1 <> na Primary Assembly 108920686 na chr14 assembled-molecule 14 Chromosome CM083600.1 <> na Primary Assembly 108579163 na chr15 assembled-molecule 15 Chromosome CM083601.1 <> na Primary Assembly 105150003 na chr16 assembled-molecule 16 Chromosome CM083602.1 <> na Primary Assembly 89406855 na chr17 assembled-molecule 17 Chromosome CM083603.1 <> na Primary Assembly 91861048 na chr18 assembled-molecule 18 Chromosome CM083604.1 <> na Primary Assembly 85571643 na chr19 assembled-molecule 19 Chromosome CM083605.1 <> na Primary Assembly 65941887 na chr20 assembled-molecule 20 Chromosome CM083606.1 <> na Primary Assembly 55985143 na chrX assembled-molecule X Chromosome CM083607.1 <> na Primary Assembly 158108884 na chrY assembled-molecule Y Chromosome CM083608.1 <> na Primary Assembly 67720946 na scaffold_100 unplaced-scaffold na na JBFMKR010000023.1 <> na Primary Assembly 103229 na scaffold_102 unplaced-scaffold na na JBFMKR010000024.1 <> na Primary Assembly 92187 na scaffold_106 unplaced-scaffold na na JBFMKR010000025.1 <> na Primary Assembly 83592 na scaffold_108 unplaced-scaffold na na JBFMKR010000026.1 <> na Primary Assembly 81209 na scaffold_113 unplaced-scaffold na na JBFMKR010000027.1 <> na Primary Assembly 69000 na scaffold_118 unplaced-scaffold na na JBFMKR010000028.1 <> na Primary Assembly 62000 na scaffold_121 unplaced-scaffold na na JBFMKR010000029.1 <> na Primary Assembly 60000 na scaffold_123 unplaced-scaffold na na JBFMKR010000030.1 <> na Primary Assembly 58154 na scaffold_126 unplaced-scaffold na na JBFMKR010000031.1 <> na Primary Assembly 57000 na scaffold_129 unplaced-scaffold na na JBFMKR010000032.1 <> na Primary Assembly 54568 na scaffold_131 unplaced-scaffold na na JBFMKR010000033.1 <> na Primary Assembly 53614 na scaffold_133 unplaced-scaffold na na JBFMKR010000034.1 <> na Primary Assembly 52000 na scaffold_134 unplaced-scaffold na na JBFMKR010000035.1 <> na Primary Assembly 50060 na scaffold_136 unplaced-scaffold na na JBFMKR010000036.1 <> na Primary Assembly 49665 na scaffold_143 unplaced-scaffold na na JBFMKR010000037.1 <> na Primary Assembly 43542 na scaffold_148 unplaced-scaffold na na JBFMKR010000038.1 <> na Primary Assembly 42205 na scaffold_155 unplaced-scaffold na na JBFMKR010000039.1 <> na Primary Assembly 37760 na scaffold_156 unplaced-scaffold na na JBFMKR010000040.1 <> na Primary Assembly 37429 na scaffold_169 unplaced-scaffold na na JBFMKR010000041.1 <> na Primary Assembly 30838 na scaffold_173 unplaced-scaffold na na JBFMKR010000042.1 <> na Primary Assembly 29468 na scaffold_174 unplaced-scaffold na na JBFMKR010000043.1 <> na Primary Assembly 28807 na scaffold_179 unplaced-scaffold na na JBFMKR010000044.1 <> na Primary Assembly 28349 na scaffold_184 unplaced-scaffold na na JBFMKR010000045.1 <> na Primary Assembly 26981 na scaffold_185 unplaced-scaffold na na JBFMKR010000046.1 <> na Primary Assembly 26458 na scaffold_188 unplaced-scaffold na na JBFMKR010000047.1 <> na Primary Assembly 26000 na scaffold_191 unplaced-scaffold na na JBFMKR010000048.1 <> na Primary Assembly 25103 na scaffold_192 unplaced-scaffold na na JBFMKR010000049.1 <> na Primary Assembly 24851 na scaffold_195 unplaced-scaffold na na JBFMKR010000050.1 <> na Primary Assembly 24373 na scaffold_196 unplaced-scaffold na na JBFMKR010000051.1 <> na Primary Assembly 24053 na scaffold_199 unplaced-scaffold na na JBFMKR010000052.1 <> na Primary Assembly 23580 na scaffold_205 unplaced-scaffold na na JBFMKR010000053.1 <> na Primary Assembly 22726 na scaffold_207 unplaced-scaffold na na JBFMKR010000054.1 <> na Primary Assembly 22000 na scaffold_209 unplaced-scaffold na na JBFMKR010000055.1 <> na Primary Assembly 21415 na scaffold_210 unplaced-scaffold na na JBFMKR010000056.1 <> na Primary Assembly 21307 na scaffold_214 unplaced-scaffold na na JBFMKR010000057.1 <> na Primary Assembly 20827 na scaffold_215 unplaced-scaffold na na JBFMKR010000058.1 <> na Primary Assembly 20180 na scaffold_216 unplaced-scaffold na na JBFMKR010000059.1 <> na Primary Assembly 20176 na scaffold_217 unplaced-scaffold na na JBFMKR010000060.1 <> na Primary Assembly 19620 na scaffold_219 unplaced-scaffold na na JBFMKR010000061.1 <> na Primary Assembly 19504 na scaffold_224 unplaced-scaffold na na JBFMKR010000062.1 <> na Primary Assembly 18990 na scaffold_228 unplaced-scaffold na na JBFMKR010000063.1 <> na Primary Assembly 18526 na scaffold_229 unplaced-scaffold na na JBFMKR010000064.1 <> na Primary Assembly 18491 na scaffold_234 unplaced-scaffold na na JBFMKR010000065.1 <> na Primary Assembly 17248 na scaffold_235 unplaced-scaffold na na JBFMKR010000066.1 <> na Primary Assembly 17211 na scaffold_236 unplaced-scaffold na na JBFMKR010000067.1 <> na Primary Assembly 17100 na scaffold_240 unplaced-scaffold na na JBFMKR010000068.1 <> na Primary Assembly 16410 na scaffold_241 unplaced-scaffold na na JBFMKR010000069.1 <> na Primary Assembly 16134 na scaffold_242 unplaced-scaffold na na JBFMKR010000070.1 <> na Primary Assembly 16012 na scaffold_243 unplaced-scaffold na na JBFMKR010000071.1 <> na Primary Assembly 15895 na scaffold_245 unplaced-scaffold na na JBFMKR010000072.1 <> na Primary Assembly 15838 na scaffold_246 unplaced-scaffold na na JBFMKR010000073.1 <> na Primary Assembly 15396 na scaffold_249 unplaced-scaffold na na JBFMKR010000074.1 <> na Primary Assembly 15066 na scaffold_250 unplaced-scaffold na na JBFMKR010000075.1 <> na Primary Assembly 14939 na scaffold_251 unplaced-scaffold na na JBFMKR010000076.1 <> na Primary Assembly 14643 na scaffold_252 unplaced-scaffold na na JBFMKR010000077.1 <> na Primary Assembly 14618 na scaffold_254 unplaced-scaffold na na JBFMKR010000078.1 <> na Primary Assembly 14159 na scaffold_255 unplaced-scaffold na na JBFMKR010000079.1 <> na Primary Assembly 14159 na scaffold_256 unplaced-scaffold na na JBFMKR010000080.1 <> na Primary Assembly 14115 na scaffold_258 unplaced-scaffold na na JBFMKR010000081.1 <> na Primary Assembly 13931 na scaffold_259 unplaced-scaffold na na JBFMKR010000082.1 <> na Primary Assembly 13920 na scaffold_262 unplaced-scaffold na na JBFMKR010000083.1 <> na Primary Assembly 11125 na scaffold_264 unplaced-scaffold na na JBFMKR010000084.1 <> na Primary Assembly 9888 na scaffold_265 unplaced-scaffold na na JBFMKR010000085.1 <> na Primary Assembly 7822 na scaffold_266 unplaced-scaffold na na JBFMKR010000086.1 <> na Primary Assembly 6284 na scaffold_268 unplaced-scaffold na na JBFMKR010000087.1 <> na Primary Assembly 3536 na scaffold_269 unplaced-scaffold na na JBFMKR010000088.1 <> na Primary Assembly 3262 na scaffold_270 unplaced-scaffold na na JBFMKR010000089.1 <> na Primary Assembly 3071 na scaffold_271 unplaced-scaffold na na JBFMKR010000090.1 <> na Primary Assembly 1000 na scaffold_272 unplaced-scaffold na na JBFMKR010000091.1 <> na Primary Assembly 1000 na scaffold_273 unplaced-scaffold na na JBFMKR010000092.1 <> na Primary Assembly 1000 na scaffold_274 unplaced-scaffold na na JBFMKR010000093.1 <> na Primary Assembly 1000 na scaffold_275 unplaced-scaffold na na JBFMKR010000094.1 <> na Primary Assembly 655 na scaffold_276 unplaced-scaffold na na JBFMKR010000095.1 <> na Primary Assembly 410 na scaffold_277 unplaced-scaffold na na JBFMKR010000096.1 <> na Primary Assembly 389 na scaffold_278 unplaced-scaffold na na JBFMKR010000097.1 <> na Primary Assembly 240 na scaffold_58 unplaced-scaffold na na JBFMKR010000098.1 <> na Primary Assembly 919000 na scaffold_63 unplaced-scaffold na na JBFMKR010000099.1 <> na Primary Assembly 615194 na scaffold_65 unplaced-scaffold na na JBFMKR010000100.1 <> na Primary Assembly 446000 na scaffold_71 unplaced-scaffold na na JBFMKR010000101.1 <> na Primary Assembly 324000 na scaffold_72 unplaced-scaffold na na JBFMKR010000102.1 <> na Primary Assembly 315800 na scaffold_74 unplaced-scaffold na na JBFMKR010000103.1 <> na Primary Assembly 285000 na scaffold_75 unplaced-scaffold na na JBFMKR010000104.1 <> na Primary Assembly 242850 na scaffold_76 unplaced-scaffold na na JBFMKR010000105.1 <> na Primary Assembly 229000 na scaffold_77 unplaced-scaffold na na JBFMKR010000106.1 <> na Primary Assembly 214076 na scaffold_80 unplaced-scaffold na na JBFMKR010000107.1 <> na Primary Assembly 193806 na scaffold_82 unplaced-scaffold na na JBFMKR010000108.1 <> na Primary Assembly 186225 na scaffold_83 unplaced-scaffold na na JBFMKR010000109.1 <> na Primary Assembly 185739 na scaffold_84 unplaced-scaffold na na JBFMKR010000110.1 <> na Primary Assembly 176164 na scaffold_86 unplaced-scaffold na na JBFMKR010000111.1 <> na Primary Assembly 156980 na scaffold_87 unplaced-scaffold na na JBFMKR010000112.1 <> na Primary Assembly 147314 na scaffold_88 unplaced-scaffold na na JBFMKR010000113.1 <> na Primary Assembly 139000 na scaffold_91 unplaced-scaffold na na JBFMKR010000114.1 <> na Primary Assembly 131134 na scaffold_92 unplaced-scaffold na na JBFMKR010000115.1 <> na Primary Assembly 130000 na scaffold_94 unplaced-scaffold na na JBFMKR010000116.1 <> na Primary Assembly 124139 na scaffold_97 unplaced-scaffold na na JBFMKR010000117.1 <> na Primary Assembly 113000 na SUPER_23 unplaced-scaffold na na JBFMKR010000118.1 <> na Primary Assembly 61280 na SUPER_25 unplaced-scaffold na na JBFMKR010000119.1 <> na Primary Assembly 15260 na chrMT assembled-molecule MT Mitochondrion CM083626.1 <> na non-nuclear 16310 na