# Assembly name: LycPic1.final.hap1 # Organism name: Lycaon pictus (African hunting dog) # Isolate: LycPic1 # Sex: male # Taxid: 9622 # BioSample: SAMN36939365 # BioProject: PRJNA1099603 # Submitter: University of Copenhagen # Date: 2024-08-01 # Assembly type: haploid (paternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBCEDC01 # Assembly method: hifiasm v. 0.19.7-r598; purge_dups v. 1.2.6; yahs v. 1.1 # Expected final version: yes # Genome coverage: 43.4x # Sequencing technology: Pacbio HiFi; Arima HiC # GenBank assembly accession: GCA_040955645.1 # Linked assembly: GCA_040955705.1 (maternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040955775.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM082633.1 <> na Primary Assembly 122923499 na chr2 assembled-molecule 2 Chromosome CM082634.1 <> na Primary Assembly 84669236 na chr3 assembled-molecule 3 Chromosome CM082635.1 <> na Primary Assembly 93323420 na chr4 assembled-molecule 4 Chromosome CM082636.1 <> na Primary Assembly 89986144 na chr5 assembled-molecule 5 Chromosome CM082637.1 <> na Primary Assembly 89762892 na chr6 assembled-molecule 6 Chromosome CM082638.1 <> na Primary Assembly 78156223 na chr7 assembled-molecule 7 Chromosome CM082639.1 <> na Primary Assembly 82895534 na chr8 assembled-molecule 8 Chromosome CM082640.1 <> na Primary Assembly 76741088 na chr9 assembled-molecule 9 Chromosome CM082641.1 <> na Primary Assembly 62789351 na chr10 assembled-molecule 10 Chromosome CM082642.1 <> na Primary Assembly 71271507 na chr11 assembled-molecule 11 Chromosome CM082643.1 <> na Primary Assembly 76046897 na chr12 assembled-molecule 12 Chromosome CM082644.1 <> na Primary Assembly 73781692 na chr13 assembled-molecule 13 Chromosome CM082645.1 <> na Primary Assembly 64347589 na chr14 assembled-molecule 14 Chromosome CM082646.1 <> na Primary Assembly 61745583 na chr15 assembled-molecule 15 Chromosome CM082647.1 <> na Primary Assembly 65209893 na chr16 assembled-molecule 16 Chromosome CM082648.1 <> na Primary Assembly 61415956 na chr17 assembled-molecule 17 Chromosome CM082649.1 <> na Primary Assembly 66202742 na chr18 assembled-molecule 18 Chromosome CM082650.1 <> na Primary Assembly 56012121 na chr19 assembled-molecule 19 Chromosome CM082651.1 <> na Primary Assembly 55551897 na chr20 assembled-molecule 20 Chromosome CM082652.1 <> na Primary Assembly 57728768 na chr21 assembled-molecule 21 Chromosome CM082653.1 <> na Primary Assembly 51274494 na chr22 assembled-molecule 22 Chromosome CM082654.1 <> na Primary Assembly 62517596 na chr23 assembled-molecule 23 Chromosome CM082655.1 <> na Primary Assembly 52943114 na chr24 assembled-molecule 24 Chromosome CM082656.1 <> na Primary Assembly 47874013 na chr25 assembled-molecule 25 Chromosome CM082657.1 <> na Primary Assembly 52827992 na chr26 assembled-molecule 26 Chromosome CM082658.1 <> na Primary Assembly 39623346 na chr27 assembled-molecule 27 Chromosome CM082659.1 <> na Primary Assembly 45972084 na chr28 assembled-molecule 28 Chromosome CM082660.1 <> na Primary Assembly 42180198 na chr29 assembled-molecule 29 Chromosome CM082661.1 <> na Primary Assembly 43595639 na chr30 assembled-molecule 30 Chromosome CM082662.1 <> na Primary Assembly 40806054 na chr31 assembled-molecule 31 Chromosome CM082663.1 <> na Primary Assembly 41327453 na chr32 assembled-molecule 32 Chromosome CM082664.1 <> na Primary Assembly 39718683 na chr33 assembled-molecule 33 Chromosome CM082665.1 <> na Primary Assembly 31821431 na chr34 assembled-molecule 34 Chromosome CM082666.1 <> na Primary Assembly 42609000 na chr35 assembled-molecule 35 Chromosome CM082667.1 <> na Primary Assembly 27185218 na chr36 assembled-molecule 36 Chromosome CM082668.1 <> na Primary Assembly 31583446 na chr37 assembled-molecule 37 Chromosome CM082669.1 <> na Primary Assembly 30738542 na chr38 assembled-molecule 38 Chromosome CM082670.1 <> na Primary Assembly 25159310 na chrY assembled-molecule Y Chromosome CM082671.1 <> na Primary Assembly 7990702 na scaffold_80 unplaced-scaffold na na JBCEDC010000001.1 <> na Primary Assembly 63000 na scaffold_73 unplaced-scaffold na na JBCEDC010000002.1 <> na Primary Assembly 82696 na scaffold_52 unplaced-scaffold na na JBCEDC010000003.1 <> na Primary Assembly 547638 na scaffold_41 unplaced-scaffold na na JBCEDC010000006.1 <> na Primary Assembly 341603 na scaffold_77 unplaced-scaffold na na JBCEDC010000009.1 <> na Primary Assembly 73466 na scaffold_57 unplaced-scaffold na na JBCEDC010000012.1 <> na Primary Assembly 298000 na scaffold_61 unplaced-scaffold na na JBCEDC010000014.1 <> na Primary Assembly 206128 na scaffold_53 unplaced-scaffold na na JBCEDC010000016.1 <> na Primary Assembly 536000 na scaffold_72 unplaced-scaffold na na JBCEDC010000017.1 <> na Primary Assembly 83452 na scaffold_63 unplaced-scaffold na na JBCEDC010000021.1 <> na Primary Assembly 151000 na scaffold_42 unplaced-scaffold na na JBCEDC010000023.1 <> na Primary Assembly 593979 na scaffold_51 unplaced-scaffold na na JBCEDC010000024.1 <> na Primary Assembly 1471000 na scaffold_67 unplaced-scaffold na na JBCEDC010000025.1 <> na Primary Assembly 113424 na scaffold_84 unplaced-scaffold na na JBCEDC010000026.1 <> na Primary Assembly 33115 na scaffold_85 unplaced-scaffold na na JBCEDC010000029.1 <> na Primary Assembly 1000 na scaffold_47 unplaced-scaffold na na JBCEDC010000031.1 <> na Primary Assembly 52440 na scaffold_71 unplaced-scaffold na na JBCEDC010000034.1 <> na Primary Assembly 84000 na scaffold_43 unplaced-scaffold na na JBCEDC010000035.1 <> na Primary Assembly 217685 na scaffold_62 unplaced-scaffold na na JBCEDC010000038.1 <> na Primary Assembly 161642 na scaffold_59 unplaced-scaffold na na JBCEDC010000040.1 <> na Primary Assembly 237000 na scaffold_44 unplaced-scaffold na na JBCEDC010000041.1 <> na Primary Assembly 195168 na scaffold_65 unplaced-scaffold na na JBCEDC010000042.1 <> na Primary Assembly 119784 na scaffold_50 unplaced-scaffold na na JBCEDC010000043.1 <> na Primary Assembly 1990540 na scaffold_82 unplaced-scaffold na na JBCEDC010000044.1 <> na Primary Assembly 40942 na scaffold_58 unplaced-scaffold na na JBCEDC010000045.1 <> na Primary Assembly 261000 na scaffold_56 unplaced-scaffold na na JBCEDC010000047.1 <> na Primary Assembly 346077 na scaffold_76 unplaced-scaffold na na JBCEDC010000048.1 <> na Primary Assembly 75258 na scaffold_78 unplaced-scaffold na na JBCEDC010000049.1 <> na Primary Assembly 65000 na scaffold_83 unplaced-scaffold na na JBCEDC010000051.1 <> na Primary Assembly 38813 na scaffold_70 unplaced-scaffold na na JBCEDC010000052.1 <> na Primary Assembly 108670 na scaffold_45 unplaced-scaffold na na JBCEDC010000056.1 <> na Primary Assembly 32974 na scaffold_64 unplaced-scaffold na na JBCEDC010000057.1 <> na Primary Assembly 139925 na scaffold_79 unplaced-scaffold na na JBCEDC010000058.1 <> na Primary Assembly 64204 na scaffold_49 unplaced-scaffold na na JBCEDC010000059.1 <> na Primary Assembly 606421 na scaffold_75 unplaced-scaffold na na JBCEDC010000061.1 <> na Primary Assembly 75789 na scaffold_54 unplaced-scaffold na na JBCEDC010000062.1 <> na Primary Assembly 426268 na scaffold_40 unplaced-scaffold na na JBCEDC010000065.1 <> na Primary Assembly 100897 na scaffold_81 unplaced-scaffold na na JBCEDC010000068.1 <> na Primary Assembly 53000 na scaffold_48 unplaced-scaffold na na JBCEDC010000069.1 <> na Primary Assembly 850340 na scaffold_46 unplaced-scaffold na na JBCEDC010000071.1 <> na Primary Assembly 63304 na scaffold_68 unplaced-scaffold na na JBCEDC010000073.1 <> na Primary Assembly 113275 na scaffold_66 unplaced-scaffold na na JBCEDC010000077.1 <> na Primary Assembly 119000 na scaffold_60 unplaced-scaffold na na JBCEDC010000078.1 <> na Primary Assembly 211000 na scaffold_74 unplaced-scaffold na na JBCEDC010000080.1 <> na Primary Assembly 76000 na scaffold_55 unplaced-scaffold na na JBCEDC010000081.1 <> na Primary Assembly 414928 na scaffold_69 unplaced-scaffold na na JBCEDC010000083.1 <> na Primary Assembly 109000 na