The repeat files provided for this assembly were generated using RepeatMasker.
  Smit, AFA, Hubley, R & Green, P.,
  RepeatMasker version 4.1.4
  1996-2010 <http://www.repeatmasker.org>.

VERSION:
RepeatMasker version 4.1.4
Search Engine: NCBI/RMBLAST [ 2.13.0+ ]
#####################################
# LIBPATH:
# /hive/data/staging/data/RepeatMasker221107/Libraries
# /cluster/home/hiram/.RepeatMaskerCache
# /hive/data/genomes/asmHubs/genbankBuild/GCA/039/881/165/GCA_039881165.1_ASM3988116v1/trackData/repeatMasker/run.cluster/RM_12514.MonOct140854282024
#####################################

Using Master RepeatMasker Database: /hive/data/staging/data/RepeatMasker221107/Libraries/RepeatMaskerLib.h5
  Title    : Dfam
  Version  : 3.6
  Date     : 2022-04-12
  Families : 733,031

Species/Taxa Search:
  Bos indicus [NCBI Taxonomy ID: 9915]
  Lineage: root;cellular organisms;Eukaryota;Opisthokonta;Metazoa;
           Eumetazoa;Bilateria;Deuterostomia;Chordata;
           Craniata <chordates>;Vertebrata <vertebrates>;
           Gnathostomata <vertebrates>;Teleostomi;Euteleostomi;
           Sarcopterygii;Dipnotetrapodomorpha;Tetrapoda;Amniota;
           Mammalia;Theria <mammals>;Eutheria;Boreoeutheria;
           Laurasiatheria;Artiodactyla;Ruminantia;Pecora;Bovidae
  800 families in ancestor taxa; 29 lineage-specific families

RepeatMasker version 4.1.4
# RMRBMeta.embl library version: CC   RELEASE 20181026;                                            *
# RepeatMasker engine: -engine rmblast -pa 1
# RepeatMasker library options: -species 'Bos indicus'

PARAMETERS:
/hive/data/staging/data/RepeatMasker221107/RepeatMasker -engine rmblast -pa 1 -align -species 'Bos indicus'