# Assembly name: ASM3988096v1 # Organism name: Caenorhabditis elegans (nematodes) # Infraspecific name: strain=UA44 # Taxid: 6239 # BioSample: SAMN14683044 # BioProject: PRJNA627736 # Submitter: University of Alabama # Date: 2024-05-28 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JACBPB01 # Assembly method: Canu v. 1.9; flye v. 2.8.1 # Expected final version: no # Reference guided assembly: GCA_000002985.3 # Genome coverage: 67.7x # Sequencing technology: Oxford Nanopore GridION # GenBank assembly accession: GCA_039880965.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_039880985.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name I assembled-molecule I Chromosome CM078254.1 <> na Primary Assembly 15369637 na II assembled-molecule II Chromosome CM078255.1 <> na Primary Assembly 15526197 na III assembled-molecule III Chromosome CM078256.1 <> na Primary Assembly 14018641 na IV assembled-molecule IV Chromosome CM078257.1 <> na Primary Assembly 17957449 na V assembled-molecule V Chromosome CM078258.1 <> na Primary Assembly 21243707 na X assembled-molecule X Chromosome CM078259.1 <> na Primary Assembly 18085148 na contig_106 unplaced-scaffold na na JACBPB010000007.1 <> na Primary Assembly 1542 na contig_113_1_10144_+ unplaced-scaffold na na JACBPB010000008.1 <> na Primary Assembly 10144 na contig_134 unplaced-scaffold na na JACBPB010000009.1 <> na Primary Assembly 2119 na contig_136 unplaced-scaffold na na JACBPB010000010.1 <> na Primary Assembly 7799 na contig_140_1_14216_+ unplaced-scaffold na na JACBPB010000011.1 <> na Primary Assembly 14216 na contig_142_21140_40853_+ unplaced-scaffold na na JACBPB010000012.1 <> na Primary Assembly 19714 na contig_143 unplaced-scaffold na na JACBPB010000013.1 <> na Primary Assembly 6192 na contig_149_2382615_2391814_+ unplaced-scaffold na na JACBPB010000014.1 <> na Primary Assembly 9200 na contig_152 unplaced-scaffold na na JACBPB010000015.1 <> na Primary Assembly 26633 na contig_156 unplaced-scaffold na na JACBPB010000016.1 <> na Primary Assembly 5117 na contig_172 unplaced-scaffold na na JACBPB010000017.1 <> na Primary Assembly 2722 na contig_181 unplaced-scaffold na na JACBPB010000018.1 <> na Primary Assembly 5576 na contig_183_962241_980084_+ unplaced-scaffold na na JACBPB010000019.1 <> na Primary Assembly 17844 na contig_191 unplaced-scaffold na na JACBPB010000020.1 <> na Primary Assembly 2295 na contig_192 unplaced-scaffold na na JACBPB010000021.1 <> na Primary Assembly 8948 na contig_195 unplaced-scaffold na na JACBPB010000022.1 <> na Primary Assembly 3137 na contig_199 unplaced-scaffold na na JACBPB010000023.1 <> na Primary Assembly 1975 na contig_201 unplaced-scaffold na na JACBPB010000024.1 <> na Primary Assembly 2903 na contig_202 unplaced-scaffold na na JACBPB010000025.1 <> na Primary Assembly 3434 na contig_203 unplaced-scaffold na na JACBPB010000026.1 <> na Primary Assembly 9387 na contig_204 unplaced-scaffold na na JACBPB010000027.1 <> na Primary Assembly 41973 na contig_206 unplaced-scaffold na na JACBPB010000028.1 <> na Primary Assembly 3043 na contig_207 unplaced-scaffold na na JACBPB010000029.1 <> na Primary Assembly 2939 na contig_209 unplaced-scaffold na na JACBPB010000030.1 <> na Primary Assembly 7580 na contig_211 unplaced-scaffold na na JACBPB010000031.1 <> na Primary Assembly 3361 na contig_213 unplaced-scaffold na na JACBPB010000032.1 <> na Primary Assembly 6967 na contig_214 unplaced-scaffold na na JACBPB010000033.1 <> na Primary Assembly 8297 na contig_216 unplaced-scaffold na na JACBPB010000034.1 <> na Primary Assembly 3462 na contig_221 unplaced-scaffold na na JACBPB010000035.1 <> na Primary Assembly 1140 na contig_222 unplaced-scaffold na na JACBPB010000036.1 <> na Primary Assembly 4385 na contig_224_1_31487_+ unplaced-scaffold na na JACBPB010000037.1 <> na Primary Assembly 31487 na contig_225 unplaced-scaffold na na JACBPB010000038.1 <> na Primary Assembly 4635 na contig_229_1_5011_+ unplaced-scaffold na na JACBPB010000039.1 <> na Primary Assembly 5011 na contig_229_5012_10013_+ unplaced-scaffold na na JACBPB010000040.1 <> na Primary Assembly 5002 na contig_4 unplaced-scaffold na na JACBPB010000041.1 <> na Primary Assembly 3222 na contig_75 unplaced-scaffold na na JACBPB010000042.1 <> na Primary Assembly 4514 na contig_83 unplaced-scaffold na na JACBPB010000043.1 <> na Primary Assembly 3526 na contig_87 unplaced-scaffold na na JACBPB010000044.1 <> na Primary Assembly 2987 na contig_99 unplaced-scaffold na na JACBPB010000045.1 <> na Primary Assembly 78138 na scaffold_127_1_45645_+ unplaced-scaffold na na JACBPB010000046.1 <> na Primary Assembly 45645 na scaffold_170_1710462_1722358_+ unplaced-scaffold na na JACBPB010000047.1 <> na Primary Assembly 11897 na scaffold_170_5424202_5465668_+ unplaced-scaffold na na JACBPB010000048.1 <> na Primary Assembly 41467 na scaffold_171_16384_23855_+ unplaced-scaffold na na JACBPB010000049.1 <> na Primary Assembly 7472 na scaffold_171_1_16383_+ unplaced-scaffold na na JACBPB010000050.1 <> na Primary Assembly 16383 na scaffold_88_1_12367_+ unplaced-scaffold na na JACBPB010000051.1 <> na Primary Assembly 12367 na scaffold_88_263132_265453_+ unplaced-scaffold na na JACBPB010000052.1 <> na Primary Assembly 2322 na scaffold_89_1973186_1977080_+ unplaced-scaffold na na JACBPB010000053.1 <> na Primary Assembly 3895 na scaffold_89_1977081_1983704_+ unplaced-scaffold na na JACBPB010000054.1 <> na Primary Assembly 6624 na scaffold_90_1_6041_+ unplaced-scaffold na na JACBPB010000055.1 <> na Primary Assembly 6041 na