# Assembly name: mMolNig1.hap1 # Organism name: Molossus nigricans (northern black mastiff bat) # Isolate: mMolNig1 # Sex: male # Taxid: 2997257 # BioSample: SAMN40002246 # BioProject: PRJNA1093103 # Submitter: Bat1K Project # Date: 2024-05-29 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBDPII01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 49.7x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_039880945.1 # Linked assembly: GCA_039880925.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_039881015.1 Primary Assembly ## GCA_039881025.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM078066.1 <> na Primary Assembly 290657952 na SUPER_2 assembled-molecule 2 Chromosome CM078067.1 <> na Primary Assembly 138851897 na SUPER_3 assembled-molecule 3 Chromosome CM078068.1 <> na Primary Assembly 131476653 na SUPER_4 assembled-molecule 4 Chromosome CM078069.1 <> na Primary Assembly 121093496 na SUPER_5 assembled-molecule 5 Chromosome CM078070.1 <> na Primary Assembly 120874742 na SUPER_6 assembled-molecule 6 Chromosome CM078071.1 <> na Primary Assembly 119953346 na SUPER_7 assembled-molecule 7 Chromosome CM078072.1 <> na Primary Assembly 117666054 na SUPER_8 assembled-molecule 8 Chromosome CM078073.1 <> na Primary Assembly 114338547 na SUPER_9 assembled-molecule 9 Chromosome CM078074.1 <> na Primary Assembly 112888293 na SUPER_10 assembled-molecule 10 Chromosome CM078075.1 <> na Primary Assembly 111884215 na SUPER_11 assembled-molecule 11 Chromosome CM078076.1 <> na Primary Assembly 107370955 na SUPER_12 assembled-molecule 12 Chromosome CM078077.1 <> na Primary Assembly 100496314 na SUPER_13 assembled-molecule 13 Chromosome CM078078.1 <> na Primary Assembly 100147662 na SUPER_14 assembled-molecule 14 Chromosome CM078079.1 <> na Primary Assembly 87228166 na SUPER_15 assembled-molecule 15 Chromosome CM078080.1 <> na Primary Assembly 80439154 na SUPER_16 assembled-molecule 16 Chromosome CM078081.1 <> na Primary Assembly 74731956 na SUPER_17 assembled-molecule 17 Chromosome CM078082.1 <> na Primary Assembly 73553748 na SUPER_18 assembled-molecule 18 Chromosome CM078083.1 <> na Primary Assembly 69488498 na SUPER_19 assembled-molecule 19 Chromosome CM078084.1 <> na Primary Assembly 58912516 na SUPER_20 assembled-molecule 20 Chromosome CM078085.1 <> na Primary Assembly 55232080 na SUPER_21 assembled-molecule 21 Chromosome CM078086.1 <> na Primary Assembly 44611289 na SUPER_22 assembled-molecule 22 Chromosome CM078087.1 <> na Primary Assembly 33141964 na SUPER_23 assembled-molecule 23 Chromosome CM078088.1 <> na Primary Assembly 29383648 na SUPER_X assembled-molecule X Chromosome CM078089.1 <> na Primary Assembly 150399988 na SUPER_Y assembled-molecule Y Chromosome CM078090.1 <> na Primary Assembly 14885543 na SUPER_1_unloc_2 unlocalized-scaffold 1 Chromosome JBDPII010000030.1 <> na Primary Assembly 2723678 na SUPER_1_unloc_3 unlocalized-scaffold 1 Chromosome JBDPII010000031.1 <> na Primary Assembly 2645337 na SUPER_1_unloc_4 unlocalized-scaffold 1 Chromosome JBDPII010000041.1 <> na Primary Assembly 1657074 na SUPER_1_unloc_6 unlocalized-scaffold 1 Chromosome JBDPII010000073.1 <> na Primary Assembly 631479 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JBDPII010000115.1 <> na Primary Assembly 301020 na SUPER_1_unloc_5 unlocalized-scaffold 1 Chromosome JBDPII010000116.1 <> na Primary Assembly 295749 na SUPER_1_unloc_7 unlocalized-scaffold 1 Chromosome JBDPII010000123.1 <> na Primary Assembly 265020 na SUPER_2_unloc_1 unlocalized-scaffold 2 Chromosome JBDPII010000035.1 <> na Primary Assembly 1996367 na SUPER_4_unloc_1 unlocalized-scaffold 4 Chromosome JBDPII010000056.1 <> na Primary Assembly 1041101 na SUPER_8_unloc_3 unlocalized-scaffold 8 Chromosome JBDPII010000027.1 <> na Primary Assembly 3739344 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JBDPII010000053.1 <> na Primary Assembly 1165796 na SUPER_8_unloc_2 unlocalized-scaffold 8 Chromosome JBDPII010000058.1 <> na Primary Assembly 990913 na SUPER_10_unloc_1 unlocalized-scaffold 10 Chromosome JBDPII010000047.1 <> na Primary Assembly 1358900 na SUPER_11_unloc_1 unlocalized-scaffold 11 Chromosome JBDPII010000094.1 <> na Primary Assembly 407468 na SUPER_12_unloc_2 unlocalized-scaffold 12 Chromosome JBDPII010000062.1 <> na Primary Assembly 901897 na SUPER_12_unloc_1 unlocalized-scaffold 12 Chromosome JBDPII010000066.1 <> na Primary Assembly 756139 na SUPER_12_unloc_3 unlocalized-scaffold 12 Chromosome JBDPII010000077.1 <> na Primary Assembly 589720 na SUPER_12_unloc_4 unlocalized-scaffold 12 Chromosome JBDPII010000079.1 <> na Primary Assembly 584712 na SUPER_14_unloc_1 unlocalized-scaffold 14 Chromosome JBDPII010000063.1 <> na Primary Assembly 881145 na SUPER_15_unloc_1 unlocalized-scaffold 15 Chromosome JBDPII010000052.1 <> na Primary Assembly 1235045 na SUPER_18_unloc_3 unlocalized-scaffold 18 Chromosome JBDPII010000078.1 <> na Primary Assembly 586737 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JBDPII010000081.1 <> na Primary Assembly 531452 na SUPER_18_unloc_2 unlocalized-scaffold 18 Chromosome JBDPII010000093.1 <> na Primary Assembly 415591 na SUPER_19_unloc_1 unlocalized-scaffold 19 Chromosome JBDPII010000121.1 <> na Primary Assembly 274190 na SUPER_21_unloc_1 unlocalized-scaffold 21 Chromosome JBDPII010000070.1 <> na Primary Assembly 669168 na SUPER_23_unloc_2 unlocalized-scaffold 23 Chromosome JBDPII010000059.1 <> na Primary Assembly 979642 na SUPER_23_unloc_1 unlocalized-scaffold 23 Chromosome JBDPII010000084.1 <> na Primary Assembly 507776 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome JBDPII010000029.1 <> na Primary Assembly 2971277 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JBDPII010000034.1 <> na Primary Assembly 2114996 na SUPER_Y_unloc_3 unlocalized-scaffold Y Chromosome JBDPII010000039.1 <> na Primary Assembly 1818212 na SUPER_Y_unloc_4 unlocalized-scaffold Y Chromosome JBDPII010000040.1 <> na Primary Assembly 1663467 na SUPER_Y_unloc_5 unlocalized-scaffold Y Chromosome JBDPII010000050.1 <> na Primary Assembly 1270817 na SUPER_Y_unloc_6 unlocalized-scaffold Y Chromosome JBDPII010000054.1 <> na Primary Assembly 1085881 na Scaffold_55 unplaced-scaffold na na JBDPII010000028.1 <> na Primary Assembly 3186844 na Scaffold_51 unplaced-scaffold na na JBDPII010000032.1 <> na Primary Assembly 2550030 na Scaffold_58 unplaced-scaffold na na JBDPII010000033.1 <> na Primary Assembly 2409973 na Scaffold_67 unplaced-scaffold na na JBDPII010000036.1 <> na Primary Assembly 1879320 na Scaffold_53 unplaced-scaffold na na JBDPII010000037.1 <> na Primary Assembly 1876508 na Scaffold_54 unplaced-scaffold na na JBDPII010000038.1 <> na Primary Assembly 1834418 na Scaffold_56 unplaced-scaffold na na JBDPII010000042.1 <> na Primary Assembly 1622645 na Scaffold_57 unplaced-scaffold na na JBDPII010000043.1 <> na Primary Assembly 1577446 na Scaffold_50 unplaced-scaffold na na JBDPII010000044.1 <> na Primary Assembly 1511214 na Scaffold_52 unplaced-scaffold na na JBDPII010000045.1 <> na Primary Assembly 1453284 na Scaffold_63 unplaced-scaffold na na JBDPII010000046.1 <> na Primary Assembly 1431787 na Scaffold_61 unplaced-scaffold na na JBDPII010000048.1 <> na Primary Assembly 1324223 na Scaffold_64 unplaced-scaffold na na JBDPII010000049.1 <> na Primary Assembly 1317886 na Scaffold_59 unplaced-scaffold na na JBDPII010000051.1 <> na Primary Assembly 1261424 na Scaffold_62 unplaced-scaffold na na JBDPII010000055.1 <> na Primary Assembly 1042586 na Scaffold_60 unplaced-scaffold na na JBDPII010000057.1 <> na Primary Assembly 1010294 na Scaffold_65 unplaced-scaffold na na JBDPII010000060.1 <> na Primary Assembly 926683 na Scaffold_66 unplaced-scaffold na na JBDPII010000061.1 <> na Primary Assembly 911822 na Scaffold_69 unplaced-scaffold na na JBDPII010000064.1 <> na Primary Assembly 809490 na Scaffold_70 unplaced-scaffold na na JBDPII010000065.1 <> na Primary Assembly 806531 na Scaffold_71 unplaced-scaffold na na JBDPII010000067.1 <> na Primary Assembly 722484 na Scaffold_72 unplaced-scaffold na na JBDPII010000068.1 <> na Primary Assembly 671210 na Scaffold_73 unplaced-scaffold na na JBDPII010000069.1 <> na Primary Assembly 669458 na Scaffold_74 unplaced-scaffold na na JBDPII010000071.1 <> na Primary Assembly 653266 na Scaffold_75 unplaced-scaffold na na JBDPII010000072.1 <> na Primary Assembly 652084 na Scaffold_76 unplaced-scaffold na na JBDPII010000074.1 <> na Primary Assembly 613934 na Scaffold_77 unplaced-scaffold na na JBDPII010000075.1 <> na Primary Assembly 607761 na Scaffold_49 unplaced-scaffold na na JBDPII010000076.1 <> na Primary Assembly 599195 na Scaffold_78 unplaced-scaffold na na JBDPII010000080.1 <> na Primary Assembly 567798 na Scaffold_79 unplaced-scaffold na na JBDPII010000082.1 <> na Primary Assembly 529761 na Scaffold_80 unplaced-scaffold na na JBDPII010000083.1 <> na Primary Assembly 523731 na Scaffold_81 unplaced-scaffold na na JBDPII010000085.1 <> na Primary Assembly 503921 na Scaffold_82 unplaced-scaffold na na JBDPII010000086.1 <> na Primary Assembly 502114 na Scaffold_83 unplaced-scaffold na na JBDPII010000087.1 <> na Primary Assembly 490697 na Scaffold_85 unplaced-scaffold na na JBDPII010000088.1 <> na Primary Assembly 489351 na Scaffold_86 unplaced-scaffold na na JBDPII010000089.1 <> na Primary Assembly 488766 na Scaffold_87 unplaced-scaffold na na JBDPII010000090.1 <> na Primary Assembly 462569 na Scaffold_88 unplaced-scaffold na na JBDPII010000091.1 <> na Primary Assembly 441567 na Scaffold_89 unplaced-scaffold na na JBDPII010000092.1 <> na Primary Assembly 426854 na Scaffold_90 unplaced-scaffold na na JBDPII010000095.1 <> na Primary Assembly 404251 na Scaffold_91 unplaced-scaffold na na JBDPII010000096.1 <> na Primary Assembly 400226 na Scaffold_92 unplaced-scaffold na na JBDPII010000097.1 <> na Primary Assembly 389843 na Scaffold_93 unplaced-scaffold na na JBDPII010000098.1 <> na Primary Assembly 387348 na Scaffold_94 unplaced-scaffold na na JBDPII010000099.1 <> na Primary Assembly 380781 na Scaffold_97 unplaced-scaffold na na JBDPII010000100.1 <> na Primary Assembly 366977 na Scaffold_95 unplaced-scaffold na na JBDPII010000101.1 <> na Primary Assembly 361756 na Scaffold_96 unplaced-scaffold na na JBDPII010000102.1 <> na Primary Assembly 354537 na Scaffold_98 unplaced-scaffold na 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Primary Assembly 305026 na Scaffold_110 unplaced-scaffold na na JBDPII010000117.1 <> na Primary Assembly 294563 na Scaffold_111 unplaced-scaffold na na JBDPII010000118.1 <> na Primary Assembly 293709 na Scaffold_112 unplaced-scaffold na na JBDPII010000119.1 <> na Primary Assembly 285057 na Scaffold_113 unplaced-scaffold na na JBDPII010000120.1 <> na Primary Assembly 282437 na Scaffold_258 unplaced-scaffold na na JBDPII010000122.1 <> na Primary Assembly 266554 na Scaffold_114 unplaced-scaffold na na JBDPII010000124.1 <> na Primary Assembly 253097 na Scaffold_115 unplaced-scaffold na na JBDPII010000125.1 <> na Primary Assembly 250314 na Scaffold_116 unplaced-scaffold na na JBDPII010000126.1 <> na Primary Assembly 243691 na Scaffold_117 unplaced-scaffold na na JBDPII010000127.1 <> na Primary Assembly 236259 na Scaffold_118 unplaced-scaffold na na JBDPII010000128.1 <> na Primary Assembly 233887 na Scaffold_119 unplaced-scaffold na na JBDPII010000129.1 <> na Primary Assembly 233756 na Scaffold_120 unplaced-scaffold na na JBDPII010000130.1 <> na Primary Assembly 228738 na Scaffold_121 unplaced-scaffold na na JBDPII010000131.1 <> na Primary Assembly 221742 na Scaffold_122 unplaced-scaffold na na JBDPII010000132.1 <> na Primary Assembly 218983 na Scaffold_123 unplaced-scaffold na na JBDPII010000133.1 <> na Primary Assembly 214187 na Scaffold_124 unplaced-scaffold na na JBDPII010000134.1 <> na Primary Assembly 210757 na Scaffold_125 unplaced-scaffold na na JBDPII010000135.1 <> na Primary Assembly 199089 na Scaffold_126 unplaced-scaffold na na JBDPII010000136.1 <> na Primary Assembly 198971 na Scaffold_127 unplaced-scaffold na na JBDPII010000137.1 <> na Primary Assembly 197218 na Scaffold_128 unplaced-scaffold na na JBDPII010000138.1 <> na Primary Assembly 195601 na Scaffold_129 unplaced-scaffold na na JBDPII010000139.1 <> na Primary Assembly 194670 na Scaffold_130 unplaced-scaffold na na JBDPII010000140.1 <> na Primary Assembly 193470 na Scaffold_131 unplaced-scaffold 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Primary Assembly 152954 na Scaffold_143 unplaced-scaffold na na JBDPII010000153.1 <> na Primary Assembly 151680 na Scaffold_144 unplaced-scaffold na na JBDPII010000154.1 <> na Primary Assembly 149876 na Scaffold_145 unplaced-scaffold na na JBDPII010000155.1 <> na Primary Assembly 146528 na Scaffold_146 unplaced-scaffold na na JBDPII010000156.1 <> na Primary Assembly 146503 na Scaffold_147 unplaced-scaffold na na JBDPII010000157.1 <> na Primary Assembly 146464 na Scaffold_148 unplaced-scaffold na na JBDPII010000158.1 <> na Primary Assembly 145700 na Scaffold_149 unplaced-scaffold na na JBDPII010000159.1 <> na Primary Assembly 143440 na Scaffold_150 unplaced-scaffold na na JBDPII010000160.1 <> na Primary Assembly 139998 na Scaffold_151 unplaced-scaffold na na JBDPII010000161.1 <> na Primary Assembly 139575 na Scaffold_152 unplaced-scaffold na na JBDPII010000162.1 <> na Primary Assembly 139155 na Scaffold_597 unplaced-scaffold na na JBDPII010000163.1 <> na Primary Assembly 138751 na Scaffold_153 unplaced-scaffold na na JBDPII010000164.1 <> na Primary Assembly 137384 na Scaffold_154 unplaced-scaffold na na JBDPII010000165.1 <> na Primary Assembly 133784 na Scaffold_155 unplaced-scaffold na na JBDPII010000166.1 <> na Primary Assembly 131512 na Scaffold_156 unplaced-scaffold na na JBDPII010000167.1 <> na Primary Assembly 130715 na Scaffold_157 unplaced-scaffold na na JBDPII010000168.1 <> na Primary Assembly 128565 na Scaffold_158 unplaced-scaffold na na JBDPII010000169.1 <> na Primary Assembly 127828 na Scaffold_604 unplaced-scaffold na na JBDPII010000170.1 <> na Primary Assembly 126539 na Scaffold_160 unplaced-scaffold na na JBDPII010000171.1 <> na Primary Assembly 126304 na Scaffold_159 unplaced-scaffold na na JBDPII010000172.1 <> na Primary Assembly 125246 na Scaffold_161 unplaced-scaffold na na JBDPII010000173.1 <> na Primary Assembly 122560 na Scaffold_162 unplaced-scaffold na na JBDPII010000174.1 <> na Primary Assembly 117930 na Scaffold_609 unplaced-scaffold na na JBDPII010000175.1 <> na Primary Assembly 117507 na Scaffold_163 unplaced-scaffold na na JBDPII010000176.1 <> na Primary Assembly 116558 na Scaffold_164 unplaced-scaffold na na JBDPII010000177.1 <> na Primary Assembly 116404 na Scaffold_165 unplaced-scaffold na na JBDPII010000178.1 <> na Primary Assembly 115761 na Scaffold_166 unplaced-scaffold na na JBDPII010000179.1 <> na Primary Assembly 113772 na Scaffold_614 unplaced-scaffold na na JBDPII010000180.1 <> na Primary Assembly 111319 na Scaffold_167 unplaced-scaffold na na JBDPII010000181.1 <> na Primary Assembly 109696 na Scaffold_168 unplaced-scaffold na na JBDPII010000182.1 <> na Primary Assembly 109102 na Scaffold_617 unplaced-scaffold na na JBDPII010000183.1 <> na Primary Assembly 108527 na Scaffold_169 unplaced-scaffold na na JBDPII010000184.1 <> na Primary Assembly 106001 na Scaffold_170 unplaced-scaffold na na JBDPII010000185.1 <> na Primary Assembly 104393 na Scaffold_620 unplaced-scaffold na na JBDPII010000186.1 <> na Primary Assembly 102901 na Scaffold_171 unplaced-scaffold na na JBDPII010000187.1 <> na Primary Assembly 100937 na Scaffold_172 unplaced-scaffold na na JBDPII010000188.1 <> na Primary Assembly 100102 na Scaffold_623 unplaced-scaffold na na JBDPII010000189.1 <> na Primary Assembly 99824 na Scaffold_173 unplaced-scaffold na na JBDPII010000190.1 <> na Primary Assembly 98470 na Scaffold_174 unplaced-scaffold na na JBDPII010000191.1 <> na Primary Assembly 98461 na Scaffold_626 unplaced-scaffold na na JBDPII010000192.1 <> na Primary Assembly 97451 na Scaffold_175 unplaced-scaffold na na JBDPII010000193.1 <> na Primary Assembly 97169 na Scaffold_176 unplaced-scaffold na na JBDPII010000194.1 <> na Primary Assembly 97052 na Scaffold_629 unplaced-scaffold na na JBDPII010000195.1 <> na Primary Assembly 94796 na Scaffold_177 unplaced-scaffold na na JBDPII010000196.1 <> na Primary Assembly 85999 na Scaffold_631 unplaced-scaffold na na JBDPII010000197.1 <> na Primary Assembly 84545 na Scaffold_178 unplaced-scaffold na na JBDPII010000198.1 <> na Primary Assembly 84205 na Scaffold_633 unplaced-scaffold na na JBDPII010000199.1 <> na Primary Assembly 83819 na Scaffold_179 unplaced-scaffold na na JBDPII010000200.1 <> na Primary Assembly 83478 na Scaffold_180 unplaced-scaffold na na JBDPII010000201.1 <> na Primary Assembly 81303 na Scaffold_636 unplaced-scaffold na na JBDPII010000202.1 <> na Primary Assembly 81143 na Scaffold_181 unplaced-scaffold na na JBDPII010000203.1 <> na Primary Assembly 80997 na Scaffold_638 unplaced-scaffold na na JBDPII010000204.1 <> na Primary Assembly 79468 na Scaffold_182 unplaced-scaffold na na JBDPII010000205.1 <> na Primary Assembly 79207 na Scaffold_640 unplaced-scaffold na na JBDPII010000206.1 <> na Primary Assembly 78792 na Scaffold_183 unplaced-scaffold na na JBDPII010000207.1 <> na Primary Assembly 78340 na Scaffold_642 unplaced-scaffold na na JBDPII010000208.1 <> na Primary Assembly 76669 na Scaffold_184 unplaced-scaffold na na JBDPII010000209.1 <> na Primary Assembly 75635 na Scaffold_644 unplaced-scaffold na na JBDPII010000210.1 <> na Primary Assembly 75213 na Scaffold_185 unplaced-scaffold na na JBDPII010000211.1 <> na Primary Assembly 74664 na Scaffold_646 unplaced-scaffold na na JBDPII010000212.1 <> na Primary Assembly 74432 na Scaffold_186 unplaced-scaffold na na JBDPII010000213.1 <> na Primary Assembly 73912 na Scaffold_648 unplaced-scaffold na na JBDPII010000214.1 <> na Primary Assembly 73390 na Scaffold_187 unplaced-scaffold na na JBDPII010000215.1 <> na Primary Assembly 72925 na Scaffold_650 unplaced-scaffold na na JBDPII010000216.1 <> na Primary Assembly 70729 na Scaffold_188 unplaced-scaffold na na JBDPII010000217.1 <> na Primary Assembly 70694 na Scaffold_652 unplaced-scaffold na na JBDPII010000218.1 <> na Primary Assembly 70539 na Scaffold_189 unplaced-scaffold na na JBDPII010000219.1 <> na Primary Assembly 69598 na Scaffold_654 unplaced-scaffold na na JBDPII010000220.1 <> na Primary Assembly 68674 na 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