# Assembly name: fChaTrf1.hap2 # Organism name: Chaetodon trifascialis (chevron butterflyfish) # Isolate: fChaTrf1 # Sex: male # Taxid: 109706 # BioSample: SAMN41253346 # BioProject: PRJNA1108765 # Submitter: Vertebrate Genomes Project # Date: 2024-05-29 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBDMAS01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; purge_dups v. 2.2; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 61.3x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_039877575.1 # Linked assembly: GCA_039877785.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_039877645.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM078159.1 <> na Primary Assembly 34204227 na SUPER_2 assembled-molecule 2 Chromosome CM078160.1 <> na Primary Assembly 33054602 na SUPER_3 assembled-molecule 3 Chromosome CM078161.1 <> na Primary Assembly 32930840 na SUPER_4 assembled-molecule 4 Chromosome CM078162.1 <> na Primary Assembly 31947482 na SUPER_5 assembled-molecule 5 Chromosome CM078163.1 <> na Primary Assembly 31184985 na SUPER_6 assembled-molecule 6 Chromosome CM078164.1 <> na Primary Assembly 30644292 na SUPER_7 assembled-molecule 7 Chromosome CM078165.1 <> na Primary Assembly 31570390 na SUPER_8 assembled-molecule 8 Chromosome CM078166.1 <> na Primary Assembly 27185243 na SUPER_9 assembled-molecule 9 Chromosome CM078167.1 <> na Primary Assembly 30162780 na SUPER_10 assembled-molecule 10 Chromosome CM078168.1 <> na Primary Assembly 29749701 na SUPER_11 assembled-molecule 11 Chromosome CM078169.1 <> na Primary Assembly 29088842 na SUPER_12 assembled-molecule 12 Chromosome CM078170.1 <> na Primary Assembly 28084352 na SUPER_13 assembled-molecule 13 Chromosome CM078171.1 <> na Primary Assembly 28164111 na SUPER_14 assembled-molecule 14 Chromosome CM078172.1 <> na Primary Assembly 27632409 na SUPER_15 assembled-molecule 15 Chromosome CM078173.1 <> na Primary Assembly 26383075 na SUPER_16 assembled-molecule 16 Chromosome CM078174.1 <> na Primary Assembly 26157099 na SUPER_17 assembled-molecule 17 Chromosome CM078175.1 <> na Primary Assembly 25745881 na SUPER_18 assembled-molecule 18 Chromosome CM078176.1 <> na Primary Assembly 24381233 na SUPER_19 assembled-molecule 19 Chromosome CM078177.1 <> na Primary Assembly 24587066 na SUPER_20 assembled-molecule 20 Chromosome CM078178.1 <> na Primary Assembly 24540740 na SUPER_21 assembled-molecule 21 Chromosome CM078179.1 <> na Primary Assembly 22409821 na SUPER_22 assembled-molecule 22 Chromosome CM078180.1 <> na Primary Assembly 20996896 na SUPER_23 assembled-molecule 23 Chromosome CM078181.1 <> na Primary Assembly 20085880 na SUPER_24 assembled-molecule 24 Chromosome CM078182.1 <> na Primary Assembly 14999448 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JBDMAS010000028.1 <> na Primary Assembly 295201 na SUPER_23_unloc_1 unlocalized-scaffold 23 Chromosome JBDMAS010000030.1 <> na Primary Assembly 202549 na SUPER_24_unloc_1 unlocalized-scaffold 24 Chromosome JBDMAS010000025.1 <> na Primary Assembly 4770343 na SUPER_24_unloc_2 unlocalized-scaffold 24 Chromosome JBDMAS010000026.1 <> na Primary Assembly 699004 na SUPER_24_unloc_3 unlocalized-scaffold 24 Chromosome JBDMAS010000032.1 <> na Primary Assembly 147490 na SUPER_24_unloc_4 unlocalized-scaffold 24 Chromosome JBDMAS010000036.1 <> na Primary Assembly 111498 na Scaffold_57 unplaced-scaffold na na JBDMAS010000027.1 <> na Primary Assembly 371501 na Scaffold_58 unplaced-scaffold na na JBDMAS010000029.1 <> na Primary Assembly 224667 na Scaffold_59 unplaced-scaffold na na JBDMAS010000031.1 <> na Primary Assembly 195347 na Scaffold_61 unplaced-scaffold na na JBDMAS010000033.1 <> na Primary Assembly 141768 na Scaffold_60 unplaced-scaffold na na JBDMAS010000034.1 <> na Primary Assembly 131847 na Scaffold_62 unplaced-scaffold na na JBDMAS010000035.1 <> na Primary Assembly 123008 na Scaffold_63 unplaced-scaffold na na JBDMAS010000037.1 <> na Primary Assembly 86992 na Scaffold_64 unplaced-scaffold na na JBDMAS010000038.1 <> na Primary Assembly 82639 na Scaffold_65 unplaced-scaffold na na JBDMAS010000039.1 <> na Primary Assembly 79106 na Scaffold_66 unplaced-scaffold na na JBDMAS010000040.1 <> na Primary Assembly 74658 na Scaffold_67 unplaced-scaffold na na JBDMAS010000041.1 <> na Primary Assembly 72879 na Scaffold_68 unplaced-scaffold na na JBDMAS010000042.1 <> na Primary Assembly 66602 na Scaffold_69 unplaced-scaffold na na JBDMAS010000043.1 <> na Primary Assembly 66456 na Scaffold_70 unplaced-scaffold na na JBDMAS010000044.1 <> na Primary Assembly 60180 na Scaffold_71 unplaced-scaffold na na JBDMAS010000045.1 <> na Primary Assembly 58131 na Scaffold_72 unplaced-scaffold na na JBDMAS010000046.1 <> na Primary Assembly 53785 na Scaffold_73 unplaced-scaffold na na JBDMAS010000047.1 <> na Primary Assembly 51713 na Scaffold_74 unplaced-scaffold na na JBDMAS010000048.1 <> na Primary Assembly 51476 na Scaffold_75 unplaced-scaffold na na JBDMAS010000049.1 <> na Primary Assembly 49645 na Scaffold_76 unplaced-scaffold na na JBDMAS010000050.1 <> na Primary Assembly 48785 na Scaffold_77 unplaced-scaffold na na JBDMAS010000051.1 <> na Primary Assembly 48259 na Scaffold_78 unplaced-scaffold na na JBDMAS010000052.1 <> na Primary Assembly 43640 na Scaffold_79 unplaced-scaffold na na JBDMAS010000053.1 <> na Primary Assembly 43612 na Scaffold_80 unplaced-scaffold na na JBDMAS010000054.1 <> na Primary Assembly 42937 na Scaffold_81 unplaced-scaffold na na JBDMAS010000055.1 <> na Primary Assembly 41967 na Scaffold_83 unplaced-scaffold na na JBDMAS010000056.1 <> na Primary Assembly 38783 na Scaffold_82 unplaced-scaffold na na JBDMAS010000057.1 <> na Primary Assembly 37656 na Scaffold_84 unplaced-scaffold na na JBDMAS010000058.1 <> na Primary Assembly 35667 na Scaffold_85 unplaced-scaffold na na JBDMAS010000059.1 <> na Primary Assembly 34875 na Scaffold_86 unplaced-scaffold na na JBDMAS010000060.1 <> na Primary Assembly 34716 na Scaffold_189 unplaced-scaffold na na JBDMAS010000061.1 <> na Primary Assembly 34069 na Scaffold_87 unplaced-scaffold na na JBDMAS010000062.1 <> na Primary Assembly 32670 na Scaffold_88 unplaced-scaffold na na JBDMAS010000063.1 <> na Primary Assembly 30872 na Scaffold_89 unplaced-scaffold na na JBDMAS010000064.1 <> na Primary Assembly 30810 na Scaffold_193 unplaced-scaffold na na JBDMAS010000065.1 <> na Primary Assembly 30529 na Scaffold_90 unplaced-scaffold na na JBDMAS010000066.1 <> na Primary Assembly 30526 na Scaffold_91 unplaced-scaffold na na JBDMAS010000067.1 <> na Primary Assembly 30371 na Scaffold_92 unplaced-scaffold na na JBDMAS010000068.1 <> na Primary Assembly 27333 na Scaffold_197 unplaced-scaffold na na JBDMAS010000069.1 <> na Primary Assembly 27128 na Scaffold_93 unplaced-scaffold na na JBDMAS010000070.1 <> na Primary Assembly 24574 na Scaffold_94 unplaced-scaffold na na JBDMAS010000071.1 <> na Primary Assembly 23732 na