# Assembly name: aPelFus1.pri # Organism name: Pelobates fuscus (common spadefoot toad) # Isolate: aPelFus1 # Sex: male # Taxid: 191477 # BioSample: SAMN39244120 # BioProject: PRJNA1060730 # Submitter: Vertebrate Genomes Project # Date: 2024-01-26 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAYKPC01 # Assembly method: deepconsensus v. 1.1; HiFiasm + Hi-C phasing v. 0.18.7-r519; purge_dups v. 1.2.5; yahs v. 1.2a.2; deepVariant polishing v. 1.4; MitoHiFi v. 3.0.0 # Expected final version: no # Genome coverage: 25.0x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_036172605.1 # RefSeq assembly accession: GCF_036172605.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_036172645.1 GCF_036172645.1 Primary Assembly ## GCA_036172655.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM069881.1 = NC_086317.1 Primary Assembly 499470508 na SUPER_2 assembled-molecule 2 Chromosome CM069882.1 = NC_086318.1 Primary Assembly 451963180 na SUPER_3 assembled-molecule 3 Chromosome CM069883.1 = NC_086319.1 Primary Assembly 427915699 na SUPER_4 assembled-molecule 4 Chromosome CM069884.1 = NC_086320.1 Primary Assembly 392841989 na SUPER_5 assembled-molecule 5 Chromosome CM069885.1 = NC_086321.1 Primary Assembly 387735018 na SUPER_6 assembled-molecule 6 Chromosome CM069886.1 = NC_086322.1 Primary Assembly 310995732 na SUPER_7 assembled-molecule 7 Chromosome CM069887.1 = NC_086323.1 Primary Assembly 210561491 na SUPER_8 assembled-molecule 8 Chromosome CM069888.1 = NC_086324.1 Primary Assembly 180456080 na SUPER_9 assembled-molecule 9 Chromosome CM069889.1 = NC_086325.1 Primary Assembly 172974767 na SUPER_10 assembled-molecule 10 Chromosome CM069890.1 = NC_086326.1 Primary Assembly 154470283 na SUPER_11 assembled-molecule 11 Chromosome CM069891.1 = NC_086327.1 Primary Assembly 143806241 na SUPER_12 assembled-molecule 12 Chromosome CM069892.1 = NC_086328.1 Primary Assembly 141677238 na SUPER_13 assembled-molecule 13 Chromosome CM069893.1 = NC_086329.1 Primary Assembly 112922485 na scaffold_77 unplaced-scaffold na na JAYKPC010000015.1 = NW_026961848.1 Primary Assembly 65668 na scaffold_110 unplaced-scaffold na na JAYKPC010000016.1 = NW_026961849.1 Primary Assembly 31000 na scaffold_69 unplaced-scaffold na na JAYKPC010000017.1 = NW_026961850.1 Primary Assembly 83999 na scaffold_113 unplaced-scaffold na na JAYKPC010000018.1 = NW_026961851.1 Primary Assembly 29411 na scaffold_40 unplaced-scaffold na na JAYKPC010000019.1 = NW_026961852.1 Primary Assembly 325537 na scaffold_80 unplaced-scaffold na na JAYKPC010000020.1 = NW_026961853.1 Primary Assembly 56613 na scaffold_63 unplaced-scaffold na na JAYKPC010000021.1 = NW_026961854.1 Primary Assembly 104000 na scaffold_112 unplaced-scaffold na na JAYKPC010000022.1 = NW_026961855.1 Primary Assembly 30000 na scaffold_97 unplaced-scaffold na na JAYKPC010000023.1 = NW_026961856.1 Primary Assembly 37715 na scaffold_20 unplaced-scaffold na na JAYKPC010000024.1 = NW_026961857.1 Primary Assembly 1054966 na scaffold_51 unplaced-scaffold na na JAYKPC010000025.1 = NW_026961858.1 Primary Assembly 149995 na scaffold_133 unplaced-scaffold na na JAYKPC010000026.1 = NW_026961859.1 Primary Assembly 20009 na scaffold_148 unplaced-scaffold na na JAYKPC010000027.1 = NW_026961860.1 Primary Assembly 15998 na scaffold_141 unplaced-scaffold na na JAYKPC010000028.1 = NW_026961861.1 Primary Assembly 17275 na scaffold_167 unplaced-scaffold na na JAYKPC010000029.1 = NW_026961862.1 Primary Assembly 4002 na scaffold_145 unplaced-scaffold na na JAYKPC010000030.1 = NW_026961863.1 Primary Assembly 16895 na scaffold_129 unplaced-scaffold na na JAYKPC010000031.1 = NW_026961864.1 Primary Assembly 22997 na scaffold_59 unplaced-scaffold na na JAYKPC010000032.1 = NW_026961865.1 Primary Assembly 121968 na scaffold_37 unplaced-scaffold na na JAYKPC010000033.1 = NW_026961866.1 Primary Assembly 372600 na scaffold_61 unplaced-scaffold na na JAYKPC010000034.1 = NW_026961867.1 Primary Assembly 109853 na scaffold_132 unplaced-scaffold na na JAYKPC010000035.1 = NW_026961868.1 Primary Assembly 21000 na scaffold_106 unplaced-scaffold na na JAYKPC010000036.1 = NW_026961869.1 Primary Assembly 33281 na scaffold_70 unplaced-scaffold na na JAYKPC010000037.1 = NW_026961870.1 Primary Assembly 82000 na scaffold_53 unplaced-scaffold na na JAYKPC010000038.1 = NW_026961871.1 Primary Assembly 135908 na scaffold_124 unplaced-scaffold na na JAYKPC010000039.1 = NW_026961872.1 Primary Assembly 25063 na scaffold_90 unplaced-scaffold na na JAYKPC010000040.1 = NW_026961873.1 Primary Assembly 44963 na scaffold_154 unplaced-scaffold na na JAYKPC010000041.1 = NW_026961874.1 Primary Assembly 13604 na scaffold_27 unplaced-scaffold na na JAYKPC010000042.1 = NW_026961875.1 Primary Assembly 555162 na scaffold_159 unplaced-scaffold na na JAYKPC010000043.1 = NW_026961876.1 Primary Assembly 12934 na scaffold_130 unplaced-scaffold na na JAYKPC010000044.1 = NW_026961877.1 Primary Assembly 22435 na scaffold_147 unplaced-scaffold na na JAYKPC010000045.1 = NW_026961878.1 Primary Assembly 16000 na scaffold_165 unplaced-scaffold na na JAYKPC010000046.1 = NW_026961879.1 Primary Assembly 6003 na scaffold_161 unplaced-scaffold na na JAYKPC010000047.1 = NW_026961880.1 Primary Assembly 10997 na scaffold_47 unplaced-scaffold na na JAYKPC010000048.1 = NW_026961881.1 Primary Assembly 163000 na scaffold_168 unplaced-scaffold na na JAYKPC010000049.1 = NW_026961882.1 Primary Assembly 4000 na scaffold_46 unplaced-scaffold na na JAYKPC010000050.1 = NW_026961883.1 Primary Assembly 170724 na scaffold_86 unplaced-scaffold na na JAYKPC010000051.1 = NW_026961884.1 Primary Assembly 46161 na scaffold_171 unplaced-scaffold na na JAYKPC010000052.1 = NW_026961885.1 Primary Assembly 1000 na scaffold_65 unplaced-scaffold na na JAYKPC010000053.1 = NW_026961886.1 Primary Assembly 93006 na scaffold_26 unplaced-scaffold na na JAYKPC010000054.1 = NW_026961887.1 Primary Assembly 613987 na scaffold_24 unplaced-scaffold na na JAYKPC010000055.1 = NW_026961888.1 Primary Assembly 647752 na scaffold_119 unplaced-scaffold na na JAYKPC010000056.1 = NW_026961889.1 Primary Assembly 27000 na scaffold_58 unplaced-scaffold na na JAYKPC010000057.1 = NW_026961890.1 Primary Assembly 127021 na scaffold_62 unplaced-scaffold na na JAYKPC010000058.1 = NW_026961891.1 Primary Assembly 106000 na scaffold_44 unplaced-scaffold na na JAYKPC010000059.1 = NW_026961892.1 Primary Assembly 188307 na scaffold_36 unplaced-scaffold na na JAYKPC010000060.1 = NW_026961893.1 Primary Assembly 398355 na scaffold_114 unplaced-scaffold na na JAYKPC010000061.1 = NW_026961894.1 Primary Assembly 29001 na scaffold_96 unplaced-scaffold na na JAYKPC010000062.1 = NW_026961895.1 Primary Assembly 37918 na scaffold_123 unplaced-scaffold na na JAYKPC010000063.1 = NW_026961896.1 Primary Assembly 26000 na scaffold_68 unplaced-scaffold na na JAYKPC010000064.1 = NW_026961897.1 Primary Assembly 85677 na scaffold_150 unplaced-scaffold na na JAYKPC010000065.1 = NW_026961898.1 Primary Assembly 14387 na scaffold_74 unplaced-scaffold na na JAYKPC010000066.1 = NW_026961899.1 Primary Assembly 71464 na scaffold_146 unplaced-scaffold na na JAYKPC010000067.1 = NW_026961900.1 Primary Assembly 16593 na scaffold_139 unplaced-scaffold na na JAYKPC010000068.1 = NW_026961901.1 Primary Assembly 18029 na scaffold_122 unplaced-scaffold na na JAYKPC010000069.1 = NW_026961902.1 Primary Assembly 26000 na scaffold_101 unplaced-scaffold na na JAYKPC010000070.1 = NW_026961903.1 Primary Assembly 35049 na scaffold_134 unplaced-scaffold na na JAYKPC010000071.1 = NW_026961904.1 Primary Assembly 20008 na scaffold_52 unplaced-scaffold na na JAYKPC010000072.1 = NW_026961905.1 Primary Assembly 144625 na scaffold_108 unplaced-scaffold na na JAYKPC010000073.1 = NW_026961906.1 Primary Assembly 31239 na scaffold_55 unplaced-scaffold na na JAYKPC010000074.1 = NW_026961907.1 Primary Assembly 131993 na scaffold_107 unplaced-scaffold na na JAYKPC010000075.1 = NW_026961908.1 Primary Assembly 32425 na scaffold_152 unplaced-scaffold na na JAYKPC010000076.1 = NW_026961909.1 Primary Assembly 14000 na scaffold_120 unplaced-scaffold na na JAYKPC010000077.1 = NW_026961910.1 Primary Assembly 26746 na scaffold_76 unplaced-scaffold na na JAYKPC010000078.1 = NW_026961911.1 Primary Assembly 66999 na scaffold_166 unplaced-scaffold na na JAYKPC010000079.1 = NW_026961912.1 Primary Assembly 5000 na scaffold_153 unplaced-scaffold na na JAYKPC010000080.1 = NW_026961913.1 Primary Assembly 13818 na scaffold_94 unplaced-scaffold na na JAYKPC010000081.1 = NW_026961914.1 Primary Assembly 39016 na scaffold_157 unplaced-scaffold na na JAYKPC010000082.1 = NW_026961915.1 Primary Assembly 13012 na scaffold_73 unplaced-scaffold na na JAYKPC010000083.1 = NW_026961916.1 Primary Assembly 71751 na scaffold_125 unplaced-scaffold na na JAYKPC010000084.1 = NW_026961917.1 Primary Assembly 25001 na scaffold_136 unplaced-scaffold na na JAYKPC010000085.1 = NW_026961918.1 Primary Assembly 20000 na scaffold_102 unplaced-scaffold na na JAYKPC010000086.1 = NW_026961919.1 Primary Assembly 34999 na scaffold_149 unplaced-scaffold na na JAYKPC010000087.1 = NW_026961920.1 Primary Assembly 15149 na scaffold_50 unplaced-scaffold na na JAYKPC010000088.1 = NW_026961921.1 Primary Assembly 150007 na scaffold_128 unplaced-scaffold na na JAYKPC010000089.1 = NW_026961922.1 Primary Assembly 24315 na scaffold_21 unplaced-scaffold na na JAYKPC010000090.1 = NW_026961923.1 Primary Assembly 1006993 na scaffold_121 unplaced-scaffold na na JAYKPC010000091.1 = NW_026961924.1 Primary Assembly 26084 na scaffold_79 unplaced-scaffold na na JAYKPC010000092.1 = NW_026961925.1 Primary Assembly 58571 na scaffold_103 unplaced-scaffold na na JAYKPC010000093.1 = NW_026961926.1 Primary Assembly 34738 na scaffold_144 unplaced-scaffold na na JAYKPC010000094.1 = NW_026961927.1 Primary Assembly 16908 na scaffold_99 unplaced-scaffold na na JAYKPC010000095.1 = NW_026961928.1 Primary Assembly 37000 na scaffold_164 unplaced-scaffold na na JAYKPC010000096.1 = NW_026961929.1 Primary Assembly 7007 na scaffold_31 unplaced-scaffold na na JAYKPC010000097.1 = NW_026961930.1 Primary Assembly 455015 na scaffold_67 unplaced-scaffold na na JAYKPC010000098.1 = NW_026961931.1 Primary Assembly 85958 na scaffold_151 unplaced-scaffold na na JAYKPC010000099.1 = NW_026961932.1 Primary Assembly 14001 na scaffold_93 unplaced-scaffold na na JAYKPC010000100.1 = NW_026961933.1 Primary Assembly 41000 na scaffold_158 unplaced-scaffold na na JAYKPC010000101.1 = NW_026961934.1 Primary Assembly 12950 na scaffold_169 unplaced-scaffold na na JAYKPC010000102.1 = NW_026961935.1 Primary Assembly 4000 na scaffold_127 unplaced-scaffold na na JAYKPC010000103.1 = NW_026961936.1 Primary Assembly 24818 na scaffold_155 unplaced-scaffold na na JAYKPC010000104.1 = NW_026961937.1 Primary Assembly 13468 na scaffold_33 unplaced-scaffold na na JAYKPC010000105.1 = NW_026961938.1 Primary Assembly 404891 na scaffold_91 unplaced-scaffold na na JAYKPC010000106.1 = NW_026961939.1 Primary Assembly 43213 na scaffold_57 unplaced-scaffold na na JAYKPC010000107.1 = NW_026961940.1 Primary Assembly 127878 na scaffold_39 unplaced-scaffold na na JAYKPC010000108.1 = NW_026961941.1 Primary Assembly 351990 na scaffold_71 unplaced-scaffold na na JAYKPC010000109.1 = NW_026961942.1 Primary Assembly 78999 na scaffold_116 unplaced-scaffold na na JAYKPC010000110.1 = NW_026961943.1 Primary Assembly 28000 na scaffold_60 unplaced-scaffold na na JAYKPC010000111.1 = NW_026961944.1 Primary Assembly 121001 na scaffold_89 unplaced-scaffold na na JAYKPC010000112.1 = NW_026961945.1 Primary Assembly 45672 na scaffold_23 unplaced-scaffold na na JAYKPC010000113.1 = NW_026961946.1 Primary Assembly 678211 na scaffold_49 unplaced-scaffold na na JAYKPC010000114.1 = NW_026961947.1 Primary Assembly 154998 na scaffold_170 unplaced-scaffold na na JAYKPC010000115.1 = NW_026961948.1 Primary Assembly 1000 na scaffold_83 unplaced-scaffold na na JAYKPC010000116.1 = NW_026961949.1 Primary Assembly 48638 na scaffold_43 unplaced-scaffold na na JAYKPC010000117.1 = NW_026961950.1 Primary Assembly 235716 na scaffold_29 unplaced-scaffold na na JAYKPC010000118.1 = NW_026961951.1 Primary Assembly 518993 na scaffold_160 unplaced-scaffold na na JAYKPC010000119.1 = NW_026961952.1 Primary Assembly 11000 na scaffold_135 unplaced-scaffold na na JAYKPC010000120.1 = NW_026961953.1 Primary Assembly 20000 na scaffold_126 unplaced-scaffold na na JAYKPC010000121.1 = NW_026961954.1 Primary Assembly 25000 na scaffold_72 unplaced-scaffold na na JAYKPC010000122.1 = NW_026961955.1 Primary Assembly 78475 na scaffold_143 unplaced-scaffold na na JAYKPC010000123.1 = NW_026961956.1 Primary Assembly 17000 na scaffold_88 unplaced-scaffold na na JAYKPC010000124.1 = NW_026961957.1 Primary Assembly 46000 na scaffold_95 unplaced-scaffold na na JAYKPC010000125.1 = NW_026961958.1 Primary Assembly 38480 na scaffold_138 unplaced-scaffold na na JAYKPC010000126.1 = NW_026961959.1 Primary Assembly 18646 na scaffold_48 unplaced-scaffold na na JAYKPC010000127.1 = NW_026961960.1 Primary Assembly 158664 na scaffold_131 unplaced-scaffold na na JAYKPC010000128.1 = NW_026961961.1 Primary Assembly 21916 na scaffold_54 unplaced-scaffold na na JAYKPC010000129.1 = NW_026961962.1 Primary Assembly 134001 na scaffold_142 unplaced-scaffold na na JAYKPC010000130.1 = NW_026961963.1 Primary Assembly 17000 na scaffold_109 unplaced-scaffold na na JAYKPC010000131.1 = NW_026961964.1 Primary Assembly 31008 na scaffold_28 unplaced-scaffold na na JAYKPC010000132.1 = NW_026961965.1 Primary Assembly 533000 na scaffold_162 unplaced-scaffold na na JAYKPC010000133.1 = NW_026961966.1 Primary Assembly 10511 na scaffold_56 unplaced-scaffold na na JAYKPC010000134.1 = NW_026961967.1 Primary Assembly 130000 na scaffold_163 unplaced-scaffold na na JAYKPC010000135.1 = NW_026961968.1 Primary Assembly 8990 na scaffold_92 unplaced-scaffold na na JAYKPC010000136.1 = NW_026961969.1 Primary Assembly 42032 na scaffold_137 unplaced-scaffold na na JAYKPC010000137.1 = NW_026961970.1 Primary Assembly 18965 na scaffold_140 unplaced-scaffold na na JAYKPC010000138.1 = NW_026961971.1 Primary Assembly 17777 na scaffold_38 unplaced-scaffold na na JAYKPC010000139.1 = NW_026961972.1 Primary Assembly 363551 na scaffold_156 unplaced-scaffold na na JAYKPC010000140.1 = NW_026961973.1 Primary Assembly 13016 na scaffold_75 unplaced-scaffold na na JAYKPC010000141.1 = NW_026961974.1 Primary Assembly 69636 na scaffold_45 unplaced-scaffold na na JAYKPC010000142.1 = NW_026961975.1 Primary Assembly 185901 na scaffold_85 unplaced-scaffold na na JAYKPC010000143.1 = NW_026961976.1 Primary Assembly 46622 na scaffold_98 unplaced-scaffold na na JAYKPC010000144.1 = NW_026961977.1 Primary Assembly 37200 na scaffold_66 unplaced-scaffold na na JAYKPC010000145.1 = NW_026961978.1 Primary Assembly 90000 na scaffold_32 unplaced-scaffold na na JAYKPC010000146.1 = NW_026961979.1 Primary Assembly 444154 na scaffold_25 unplaced-scaffold na na JAYKPC010000147.1 = NW_026961980.1 Primary Assembly 626782 na scaffold_117 unplaced-scaffold na na JAYKPC010000148.1 = NW_026961981.1 Primary Assembly 27514 na scaffold_115 unplaced-scaffold na na JAYKPC010000149.1 = NW_026961982.1 Primary Assembly 28000 na scaffold_118 unplaced-scaffold na na JAYKPC010000150.1 = NW_026961983.1 Primary Assembly 27176 na scaffold_111 unplaced-scaffold na na JAYKPC010000151.1 = NW_026961984.1 Primary Assembly 30157 na scaffold_78 unplaced-scaffold na na JAYKPC010000152.1 = NW_026961985.1 Primary Assembly 62190 na scaffold_35 unplaced-scaffold na na JAYKPC010000153.1 = NW_026961986.1 Primary Assembly 399167 na scaffold_82 unplaced-scaffold na na JAYKPC010000154.1 = NW_026961987.1 Primary Assembly 55000 na scaffold_64 unplaced-scaffold na na JAYKPC010000155.1 = NW_026961988.1 Primary Assembly 94000 na scaffold_42 unplaced-scaffold na na JAYKPC010000156.1 = NW_026961989.1 Primary Assembly 248638 na H_1 unplaced-scaffold na na JAYKPC010000157.1 = NW_026961990.1 Primary Assembly 743113 na H_2 unplaced-scaffold na na JAYKPC010000158.1 = NW_026961991.1 Primary Assembly 685187 na H_3 unplaced-scaffold na na JAYKPC010000159.1 = NW_026961992.1 Primary Assembly 455454 na H_4 unplaced-scaffold na na JAYKPC010000160.1 = NW_026961993.1 Primary Assembly 400999 na ptg000001c_rc_rotated assembled-molecule MT Mitochondrion CM069895.1 <> na non-nuclear 17638 na