# Assembly name: bHelExo1.hap1 # Organism name: Heliangelus exortis (birds) # Isolate: bHelExo1 # Sex: female # Taxid: 472823 # BioSample: SAMN37253778 # BioProject: PRJNA1012326 # Submitter: Vertebrate Genomes Project # Date: 2024-01-17 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAVJNM01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; purge_dups v. 1.2.6 + galaxy0; yahs v. 1.2a.2 + galaxy0 # Expected final version: no # Genome coverage: 47.0x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_036169615.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_036169665.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM069772.1 <> na Primary Assembly 198225612 na SUPER_2 assembled-molecule 2 Chromosome CM069773.1 <> na Primary Assembly 151565952 na SUPER_3 assembled-molecule 3 Chromosome CM069774.1 <> na Primary Assembly 115481020 na SUPER_4 assembled-molecule 4 Chromosome CM069775.1 <> na Primary Assembly 44385304 na SUPER_5 assembled-molecule 5 Chromosome CM069776.1 <> na Primary Assembly 42982524 na SUPER_6 assembled-molecule 6 Chromosome CM069777.1 <> na Primary Assembly 38992539 na SUPER_7 assembled-molecule 7 Chromosome CM069778.1 <> na Primary Assembly 34946267 na SUPER_8 assembled-molecule 8 Chromosome CM069779.1 <> na Primary Assembly 30878215 na SUPER_9 assembled-molecule 9 Chromosome CM069780.1 <> na Primary Assembly 26406658 na SUPER_10 assembled-molecule 10 Chromosome CM069781.1 <> na Primary Assembly 22774102 na SUPER_11 assembled-molecule 11 Chromosome CM069782.1 <> na Primary Assembly 22340577 na SUPER_12 assembled-molecule 12 Chromosome CM069783.1 <> na Primary Assembly 21369309 na SUPER_13 assembled-molecule 13 Chromosome CM069784.1 <> na Primary Assembly 19428451 na SUPER_14 assembled-molecule 14 Chromosome CM069785.1 <> na Primary Assembly 18959645 na SUPER_15 assembled-molecule 15 Chromosome CM069786.1 <> na Primary Assembly 17581156 na SUPER_16 assembled-molecule 16 Chromosome CM069787.1 <> na Primary Assembly 16294115 na SUPER_17 assembled-molecule 17 Chromosome CM069788.1 <> na Primary Assembly 15887822 na SUPER_18 assembled-molecule 18 Chromosome CM069789.1 <> na Primary Assembly 15873354 na SUPER_19 assembled-molecule 19 Chromosome CM069790.1 <> na Primary Assembly 13931110 na SUPER_20 assembled-molecule 20 Chromosome CM069791.1 <> na Primary Assembly 12326340 na SUPER_21 assembled-molecule 21 Chromosome CM069792.1 <> na Primary Assembly 11066191 na SUPER_22 assembled-molecule 22 Chromosome CM069793.1 <> na Primary Assembly 10921555 na SUPER_23 assembled-molecule 23 Chromosome CM069794.1 <> na Primary Assembly 8040081 na SUPER_24 assembled-molecule 24 Chromosome CM069795.1 <> na Primary Assembly 6039906 na SUPER_25 assembled-molecule 25 Chromosome CM069796.1 <> na Primary Assembly 6461023 na SUPER_26 assembled-molecule 26 Chromosome CM069797.1 <> na Primary Assembly 6364781 na SUPER_27 assembled-molecule 27 Chromosome CM069798.1 <> na Primary Assembly 4172793 na SUPER_28 assembled-molecule 28 Chromosome CM069799.1 <> na Primary Assembly 5855011 na SUPER_29 assembled-molecule 29 Chromosome CM069800.1 <> na Primary Assembly 5493681 na SUPER_30 assembled-molecule 30 Chromosome CM069801.1 <> na Primary Assembly 4864750 na SUPER_31 assembled-molecule 31 Chromosome CM069802.1 <> na Primary Assembly 1988573 na SUPER_W assembled-molecule W Chromosome CM069803.1 <> na Primary Assembly 14480854 na SUPER_Z assembled-molecule Z Chromosome CM069804.1 <> na Primary Assembly 73898144 na SUPER_W_unloc_2 unlocalized-scaffold W Chromosome JAVJNM010000034.1 <> na Primary Assembly 1066638 na SUPER_W_unloc_1 unlocalized-scaffold W Chromosome JAVJNM010000041.1 <> na Primary Assembly 383607 na Scaffold_100 unplaced-scaffold na na JAVJNM010000079.1 <> na Primary Assembly 48742 na Scaffold_101 unplaced-scaffold na na JAVJNM010000080.1 <> na Primary Assembly 47514 na Scaffold_102 unplaced-scaffold na na JAVJNM010000081.1 <> na Primary Assembly 47488 na Scaffold_103 unplaced-scaffold na na JAVJNM010000082.1 <> na Primary Assembly 44798 na Scaffold_104 unplaced-scaffold na na JAVJNM010000084.1 <> na Primary Assembly 43743 na Scaffold_105 unplaced-scaffold na na JAVJNM010000085.1 <> na Primary Assembly 43652 na Scaffold_106 unplaced-scaffold na na JAVJNM010000087.1 <> na Primary Assembly 40024 na Scaffold_107 unplaced-scaffold na na JAVJNM010000088.1 <> na Primary Assembly 39144 na Scaffold_108 unplaced-scaffold na na JAVJNM010000090.1 <> na Primary Assembly 38586 na Scaffold_109 unplaced-scaffold na na JAVJNM010000091.1 <> na Primary Assembly 38410 na Scaffold_110 unplaced-scaffold na na JAVJNM010000093.1 <> na Primary Assembly 37712 na Scaffold_111 unplaced-scaffold na na JAVJNM010000095.1 <> na Primary Assembly 35518 na Scaffold_112 unplaced-scaffold na na JAVJNM010000096.1 <> na Primary Assembly 34152 na Scaffold_113 unplaced-scaffold na na JAVJNM010000098.1 <> na Primary Assembly 32803 na Scaffold_114 unplaced-scaffold na na JAVJNM010000100.1 <> na Primary Assembly 32047 na Scaffold_115 unplaced-scaffold na na JAVJNM010000102.1 <> na Primary Assembly 31826 na Scaffold_116 unplaced-scaffold na na JAVJNM010000104.1 <> na Primary Assembly 31561 na Scaffold_117 unplaced-scaffold na na JAVJNM010000106.1 <> na Primary Assembly 30932 na Scaffold_118 unplaced-scaffold na na JAVJNM010000108.1 <> na Primary Assembly 30329 na Scaffold_119 unplaced-scaffold na na JAVJNM010000110.1 <> na Primary Assembly 29487 na Scaffold_120 unplaced-scaffold na na JAVJNM010000112.1 <> na Primary Assembly 29139 na Scaffold_121 unplaced-scaffold na na JAVJNM010000114.1 <> na Primary Assembly 27547 na Scaffold_122 unplaced-scaffold na na JAVJNM010000118.1 <> na Primary Assembly 25511 na Scaffold_123 unplaced-scaffold na na JAVJNM010000119.1 <> na Primary Assembly 24904 na Scaffold_124 unplaced-scaffold na na JAVJNM010000121.1 <> na Primary Assembly 23084 na Scaffold_125 unplaced-scaffold na na JAVJNM010000125.1 <> na Primary Assembly 21200 na Scaffold_126 unplaced-scaffold na na JAVJNM010000128.1 <> na Primary Assembly 17739 na Scaffold_127 unplaced-scaffold na na JAVJNM010000131.1 <> na Primary Assembly 14374 na Scaffold_129 unplaced-scaffold na na JAVJNM010000036.1 <> na Primary Assembly 626617 na Scaffold_130 unplaced-scaffold na na JAVJNM010000039.1 <> na Primary Assembly 455779 na Scaffold_131 unplaced-scaffold na na JAVJNM010000040.1 <> na Primary Assembly 434258 na Scaffold_132 unplaced-scaffold na na JAVJNM010000037.1 <> na Primary Assembly 615870 na Scaffold_135 unplaced-scaffold na na JAVJNM010000035.1 <> na Primary Assembly 752594 na Scaffold_276 unplaced-scaffold na na JAVJNM010000038.1 <> na Primary Assembly 568202 na Scaffold_277 unplaced-scaffold na na JAVJNM010000073.1 <> na Primary Assembly 52078 na Scaffold_278 unplaced-scaffold na na JAVJNM010000078.1 <> na Primary Assembly 48833 na Scaffold_279 unplaced-scaffold na na JAVJNM010000083.1 <> na Primary Assembly 44313 na Scaffold_280 unplaced-scaffold na na JAVJNM010000086.1 <> na Primary Assembly 43331 na Scaffold_281 unplaced-scaffold na na JAVJNM010000089.1 <> na Primary Assembly 38844 na Scaffold_282 unplaced-scaffold na na JAVJNM010000092.1 <> na Primary Assembly 38383 na Scaffold_283 unplaced-scaffold na na JAVJNM010000094.1 <> na Primary Assembly 37013 na Scaffold_284 unplaced-scaffold na na JAVJNM010000097.1 <> na Primary Assembly 33989 na Scaffold_285 unplaced-scaffold na na JAVJNM010000099.1 <> na Primary Assembly 32740 na Scaffold_286 unplaced-scaffold na na JAVJNM010000101.1 <> na Primary Assembly 31994 na Scaffold_287 unplaced-scaffold na na JAVJNM010000103.1 <> na Primary Assembly 31662 na Scaffold_288 unplaced-scaffold na na JAVJNM010000105.1 <> na Primary Assembly 31009 na Scaffold_289 unplaced-scaffold na na JAVJNM010000107.1 <> na Primary Assembly 30832 na Scaffold_290 unplaced-scaffold na na JAVJNM010000109.1 <> na Primary Assembly 30059 na Scaffold_291 unplaced-scaffold na na JAVJNM010000111.1 <> na Primary Assembly 29278 na Scaffold_292 unplaced-scaffold na na JAVJNM010000113.1 <> na Primary Assembly 28550 na Scaffold_293 unplaced-scaffold na na JAVJNM010000115.1 <> na Primary Assembly 26941 na Scaffold_294 unplaced-scaffold na na JAVJNM010000116.1 <> na Primary Assembly 26537 na Scaffold_295 unplaced-scaffold na na JAVJNM010000117.1 <> na Primary Assembly 25932 na Scaffold_296 unplaced-scaffold na na JAVJNM010000120.1 <> na Primary Assembly 24409 na Scaffold_297 unplaced-scaffold na na JAVJNM010000122.1 <> na Primary Assembly 22359 na Scaffold_298 unplaced-scaffold na na JAVJNM010000123.1 <> na Primary Assembly 22214 na Scaffold_299 unplaced-scaffold na na JAVJNM010000124.1 <> na Primary Assembly 21638 na Scaffold_300 unplaced-scaffold na na JAVJNM010000126.1 <> na Primary Assembly 19850 na Scaffold_301 unplaced-scaffold na na JAVJNM010000127.1 <> na Primary Assembly 18023 na Scaffold_302 unplaced-scaffold na na JAVJNM010000129.1 <> na Primary Assembly 17437 na Scaffold_303 unplaced-scaffold na na JAVJNM010000130.1 <> na Primary Assembly 16634 na Scaffold_65 unplaced-scaffold na na JAVJNM010000042.1 <> na Primary Assembly 211984 na Scaffold_66 unplaced-scaffold na na JAVJNM010000043.1 <> na Primary Assembly 153959 na Scaffold_67 unplaced-scaffold na na JAVJNM010000044.1 <> na Primary Assembly 134606 na Scaffold_68 unplaced-scaffold na na JAVJNM010000045.1 <> na Primary Assembly 129707 na Scaffold_69 unplaced-scaffold na na JAVJNM010000046.1 <> na Primary Assembly 103133 na Scaffold_70 unplaced-scaffold na na JAVJNM010000047.1 <> na Primary Assembly 92798 na Scaffold_71 unplaced-scaffold na na JAVJNM010000048.1 <> na Primary Assembly 86874 na Scaffold_72 unplaced-scaffold na na JAVJNM010000049.1 <> na Primary Assembly 84785 na Scaffold_73 unplaced-scaffold na na JAVJNM010000050.1 <> na Primary Assembly 84251 na Scaffold_74 unplaced-scaffold na na JAVJNM010000051.1 <> na Primary Assembly 79744 na Scaffold_75 unplaced-scaffold na na JAVJNM010000052.1 <> na Primary Assembly 77494 na Scaffold_76 unplaced-scaffold na na JAVJNM010000053.1 <> na Primary Assembly 74991 na Scaffold_77 unplaced-scaffold na na JAVJNM010000054.1 <> na Primary Assembly 74095 na Scaffold_78 unplaced-scaffold na na JAVJNM010000055.1 <> na Primary Assembly 73226 na Scaffold_79 unplaced-scaffold na na JAVJNM010000056.1 <> na Primary Assembly 71961 na Scaffold_80 unplaced-scaffold na na JAVJNM010000057.1 <> na Primary Assembly 70074 na Scaffold_81 unplaced-scaffold na na JAVJNM010000058.1 <> na Primary Assembly 68692 na Scaffold_82 unplaced-scaffold na na JAVJNM010000059.1 <> na Primary Assembly 64435 na Scaffold_83 unplaced-scaffold na na JAVJNM010000060.1 <> na Primary Assembly 64295 na Scaffold_84 unplaced-scaffold na na JAVJNM010000061.1 <> na Primary Assembly 64028 na Scaffold_85 unplaced-scaffold na na JAVJNM010000062.1 <> na Primary Assembly 63325 na Scaffold_86 unplaced-scaffold na na JAVJNM010000063.1 <> na Primary Assembly 62203 na Scaffold_87 unplaced-scaffold na na JAVJNM010000064.1 <> na Primary Assembly 61269 na Scaffold_88 unplaced-scaffold na na JAVJNM010000065.1 <> na Primary Assembly 57498 na Scaffold_89 unplaced-scaffold na na JAVJNM010000066.1 <> na Primary Assembly 57105 na Scaffold_90 unplaced-scaffold na na JAVJNM010000067.1 <> na Primary Assembly 56933 na Scaffold_91 unplaced-scaffold na na JAVJNM010000068.1 <> na Primary Assembly 56375 na Scaffold_92 unplaced-scaffold na na JAVJNM010000069.1 <> na Primary Assembly 56173 na Scaffold_93 unplaced-scaffold na na JAVJNM010000070.1 <> na Primary Assembly 55840 na Scaffold_94 unplaced-scaffold na na JAVJNM010000071.1 <> na Primary Assembly 54626 na Scaffold_95 unplaced-scaffold na na JAVJNM010000072.1 <> na Primary Assembly 54218 na Scaffold_96 unplaced-scaffold na na JAVJNM010000074.1 <> na Primary Assembly 51306 na Scaffold_97 unplaced-scaffold na na JAVJNM010000076.1 <> na Primary Assembly 50843 na Scaffold_98 unplaced-scaffold na na JAVJNM010000075.1 <> na Primary Assembly 50989 na Scaffold_99 unplaced-scaffold na na JAVJNM010000077.1 <> na Primary Assembly 49051 na