# Assembly name: bColLiv1.mat # Organism name: Columba livia (rock pigeon) # Infraspecific name: breed=racing homer # Isolate: bColLiv1 # Sex: female # Taxid: 8932 # BioSample: SAMN38891892 # BioProject: PRJNA1054132 # Submitter: Vertebrate Genomes Project # Date: 2024-02-06 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAYMZE01 # Assembly method: HiFiasm + trio phasing v. 0.19.7 + galaxy1; yahs v. 1.2a.2 + galaxy0; mitoHiFi v. 3.0 + galaxy0 # Expected final version: no # GenBank assembly accession: GCA_036010775.1 # Linked assembly: GCA_036013475.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_036010795.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM070923.1 <> na Primary Assembly 212747336 na SUPER_2 assembled-molecule 2 Chromosome CM070924.1 <> na Primary Assembly 160372434 na SUPER_3 assembled-molecule 3 Chromosome CM070925.1 <> na Primary Assembly 121985148 na SUPER_4 assembled-molecule 4 Chromosome CM070926.1 <> na Primary Assembly 79285947 na SUPER_5 assembled-molecule 5 Chromosome CM070927.1 <> na Primary Assembly 68652091 na SUPER_6 assembled-molecule 6 Chromosome CM070928.1 <> na Primary Assembly 39937628 na SUPER_7 assembled-molecule 7 Chromosome CM070929.1 <> na Primary Assembly 41410346 na SUPER_8 assembled-molecule 8 Chromosome CM070930.1 <> na Primary Assembly 34705555 na SUPER_9 assembled-molecule 9 Chromosome CM070931.1 <> na Primary Assembly 32037399 na SUPER_10 assembled-molecule 10 Chromosome CM070932.1 <> na Primary Assembly 22615167 na SUPER_11 assembled-molecule 11 Chromosome CM070933.1 <> na Primary Assembly 22434419 na SUPER_12 assembled-molecule 12 Chromosome CM070934.1 <> na Primary Assembly 21581271 na SUPER_13 assembled-molecule 13 Chromosome CM070935.1 <> na Primary Assembly 21561307 na SUPER_14 assembled-molecule 14 Chromosome CM070936.1 <> na Primary Assembly 20373608 na SUPER_15 assembled-molecule 15 Chromosome CM070937.1 <> na Primary Assembly 17720294 na SUPER_16 assembled-molecule 16 Chromosome CM070938.1 <> na Primary Assembly 15736336 na SUPER_17 assembled-molecule 17 Chromosome CM070939.1 <> na Primary Assembly 14462157 na SUPER_18 assembled-molecule 18 Chromosome CM070940.1 <> na Primary Assembly 13687327 na SUPER_19 assembled-molecule 19 Chromosome CM070941.1 <> na Primary Assembly 5607349 na SUPER_20 assembled-molecule 20 Chromosome CM070942.1 <> na Primary Assembly 11620584 na SUPER_21 assembled-molecule 21 Chromosome CM070943.1 <> na Primary Assembly 11074395 na SUPER_22 assembled-molecule 22 Chromosome CM070944.1 <> na Primary Assembly 8219318 na SUPER_23 assembled-molecule 23 Chromosome CM070945.1 <> na Primary Assembly 7048330 na SUPER_24 assembled-molecule 24 Chromosome CM070946.1 <> na Primary Assembly 7589925 na SUPER_25 assembled-molecule 25 Chromosome CM070947.1 <> na Primary Assembly 6370338 na SUPER_26 assembled-molecule 26 Chromosome CM070948.1 <> na Primary Assembly 5384523 na SUPER_27 assembled-molecule 27 Chromosome CM070949.1 <> na Primary Assembly 6120771 na SUPER_28 assembled-molecule 28 Chromosome CM070950.1 <> na Primary Assembly 2793849 na SUPER_29 assembled-molecule 29 Chromosome CM070951.1 <> na Primary Assembly 2800527 na SUPER_30 assembled-molecule 30 Chromosome CM070952.1 <> na Primary Assembly 1064326 na SUPER_31 assembled-molecule 31 Chromosome CM070953.1 <> na Primary Assembly 1259694 na SUPER_32 assembled-molecule 32 Chromosome CM070954.1 <> na Primary Assembly 553760 na SUPER_33 assembled-molecule 33 Chromosome CM070955.1 <> na Primary Assembly 571624 na SUPER_34 assembled-molecule 34 Chromosome CM070956.1 <> na Primary Assembly 801785 na SUPER_35 assembled-molecule 35 Chromosome CM070957.1 <> na Primary Assembly 330184 na SUPER_36 assembled-molecule 36 Chromosome CM070958.1 <> na Primary Assembly 815434 na SUPER_37 assembled-molecule 37 Chromosome CM070959.1 <> na Primary Assembly 722582 na SUPER_38 assembled-molecule 38 Chromosome CM070960.1 <> na Primary Assembly 204948 na SUPER_39 assembled-molecule 39 Chromosome CM070961.1 <> na Primary Assembly 525448 na Scaffold_772 unplaced-scaffold na na JAYMZE010000027.1 <> na Primary Assembly 5480669 na Scaffold_773 unplaced-scaffold na na JAYMZE010000029.1 <> na Primary Assembly 5080846 na Scaffold_774 unplaced-scaffold na na JAYMZE010000030.1 <> na Primary Assembly 4056814 na Scaffold_775 unplaced-scaffold na na JAYMZE010000031.1 <> na Primary Assembly 3953305 na Scaffold_776 unplaced-scaffold na na JAYMZE010000032.1 <> na Primary Assembly 3699953 na Scaffold_777 unplaced-scaffold na na JAYMZE010000033.1 <> na Primary Assembly 3695346 na Scaffold_778 unplaced-scaffold na na JAYMZE010000034.1 <> na Primary Assembly 2820436 na Scaffold_779 unplaced-scaffold na na JAYMZE010000037.1 <> na Primary Assembly 2640425 na Scaffold_780 unplaced-scaffold na na JAYMZE010000038.1 <> na Primary Assembly 2481920 na Scaffold_781 unplaced-scaffold na na JAYMZE010000039.1 <> na Primary Assembly 2366680 na Scaffold_782 unplaced-scaffold na na JAYMZE010000040.1 <> na Primary Assembly 1951917 na Scaffold_129 unplaced-scaffold na na JAYMZE010000041.1 <> na Primary Assembly 1912333 na Scaffold_126 unplaced-scaffold na na JAYMZE010000042.1 <> na Primary Assembly 1781211 na Scaffold_124 unplaced-scaffold na na JAYMZE010000043.1 <> na Primary Assembly 1729086 na Scaffold_783 unplaced-scaffold na na JAYMZE010000044.1 <> na Primary Assembly 1399813 na Scaffold_784 unplaced-scaffold na na JAYMZE010000045.1 <> na Primary Assembly 1346324 na Scaffold_121 unplaced-scaffold na na JAYMZE010000046.1 <> na Primary Assembly 1284129 na Scaffold_785 unplaced-scaffold na na JAYMZE010000048.1 <> na Primary Assembly 1269421 na Scaffold_786 unplaced-scaffold na na JAYMZE010000049.1 <> na Primary Assembly 1236601 na Scaffold_787 unplaced-scaffold na na JAYMZE010000050.1 <> na Primary Assembly 1176536 na Scaffold_92 unplaced-scaffold na na JAYMZE010000051.1 <> na Primary Assembly 1164190 na Scaffold_788 unplaced-scaffold na na JAYMZE010000052.1 <> na Primary Assembly 1108951 na Scaffold_789 unplaced-scaffold na na JAYMZE010000054.1 <> na Primary Assembly 1070245 na Scaffold_790 unplaced-scaffold na na JAYMZE010000055.1 <> na Primary Assembly 1028993 na Scaffold_791 unplaced-scaffold na na JAYMZE010000056.1 <> na Primary Assembly 1020687 na Scaffold_792 unplaced-scaffold na na JAYMZE010000057.1 <> na Primary Assembly 1013044 na Scaffold_793 unplaced-scaffold na na JAYMZE010000058.1 <> na Primary Assembly 1011233 na Scaffold_794 unplaced-scaffold na na JAYMZE010000059.1 <> na Primary Assembly 1005749 na Scaffold_116 unplaced-scaffold na na JAYMZE010000060.1 <> na Primary Assembly 939572 na Scaffold_796 unplaced-scaffold na na JAYMZE010000061.1 <> na Primary Assembly 938922 na Scaffold_797 unplaced-scaffold na na JAYMZE010000062.1 <> na Primary Assembly 933002 na Scaffold_91 unplaced-scaffold na na JAYMZE010000064.1 <> na Primary Assembly 895808 na Scaffold_97 unplaced-scaffold na na JAYMZE010000066.1 <> na Primary Assembly 782963 na Scaffold_798 unplaced-scaffold na na JAYMZE010000067.1 <> na Primary Assembly 768721 na Scaffold_800 unplaced-scaffold na na JAYMZE010000068.1 <> na Primary Assembly 756607 na Scaffold_801 unplaced-scaffold na na JAYMZE010000070.1 <> na Primary Assembly 712837 na Scaffold_802 unplaced-scaffold na na JAYMZE010000071.1 <> na Primary Assembly 672040 na Scaffold_98 unplaced-scaffold na na JAYMZE010000072.1 <> na Primary Assembly 660130 na Scaffold_803 unplaced-scaffold na na JAYMZE010000073.1 <> na Primary Assembly 631124 na Scaffold_804 unplaced-scaffold na na JAYMZE010000074.1 <> na Primary Assembly 610710 na Scaffold_805 unplaced-scaffold na na JAYMZE010000075.1 <> na Primary Assembly 597730 na Scaffold_94 unplaced-scaffold na na JAYMZE010000076.1 <> na Primary Assembly 596169 na Scaffold_806 unplaced-scaffold na na JAYMZE010000077.1 <> na Primary Assembly 593498 na Scaffold_808 unplaced-scaffold na na JAYMZE010000078.1 <> na Primary Assembly 593478 na Scaffold_809 unplaced-scaffold na na JAYMZE010000080.1 <> na Primary Assembly 589527 na Scaffold_810 unplaced-scaffold na na JAYMZE010000081.1 <> na Primary Assembly 584227 na Scaffold_811 unplaced-scaffold na na JAYMZE010000082.1 <> na Primary Assembly 573891 na Scaffold_812 unplaced-scaffold na na JAYMZE010000083.1 <> na Primary Assembly 569863 na Scaffold_813 unplaced-scaffold na na JAYMZE010000084.1 <> na Primary Assembly 559709 na Scaffold_814 unplaced-scaffold na na JAYMZE010000086.1 <> na Primary Assembly 546709 na Scaffold_815 unplaced-scaffold na na JAYMZE010000087.1 <> na Primary Assembly 530038 na Scaffold_816 unplaced-scaffold na na JAYMZE010000088.1 <> na Primary Assembly 529865 na Scaffold_817 unplaced-scaffold na na JAYMZE010000090.1 <> na Primary Assembly 504266 na Scaffold_818 unplaced-scaffold na na JAYMZE010000091.1 <> na Primary Assembly 492565 na Scaffold_89 unplaced-scaffold na na JAYMZE010000092.1 <> na Primary Assembly 488203 na Scaffold_819 unplaced-scaffold na na JAYMZE010000093.1 <> na Primary Assembly 487207 na Scaffold_820 unplaced-scaffold na na JAYMZE010000094.1 <> na Primary Assembly 480677 na Scaffold_799 unplaced-scaffold na na JAYMZE010000095.1 <> na Primary Assembly 466050 na Scaffold_96 unplaced-scaffold na na JAYMZE010000096.1 <> na Primary Assembly 455753 na Scaffold_807 unplaced-scaffold na na JAYMZE010000097.1 <> na Primary Assembly 450155 na Scaffold_821 unplaced-scaffold na na JAYMZE010000098.1 <> na Primary Assembly 446270 na Scaffold_822 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