# Assembly name: rCanAsp1.hap2 # Organism name: Candoia aspera (snakes) # Isolate: rCanAsp1 # Sex: female # Taxid: 51853 # BioSample: SAMN37159891 # BioProject: PRJNA1009782 # Submitter: Vertebrate Genomes Project # Date: 2024-01-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAYKKZ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy3; yahs v. 1.2a.2 + galaxy0 # Expected final version: no # Genome coverage: 37.0x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_035149785.1 # RefSeq assembly accession: GCF_035149785.1 # RefSeq assembly and GenBank assemblies identical: no # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_035149795.1 GCF_035149795.1 Primary Assembly ## GCA_035149805.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM068885.1 = NC_086153.1 Primary Assembly 343993754 na SUPER_2 assembled-molecule 2 Chromosome CM068886.1 = NC_086154.1 Primary Assembly 265922563 na SUPER_3 assembled-molecule 3 Chromosome CM068887.1 = NC_086155.1 Primary Assembly 209480725 na SUPER_4 assembled-molecule 4 Chromosome CM068888.1 = NC_086156.1 Primary Assembly 119283806 na SUPER_5 assembled-molecule 5 Chromosome CM068889.1 = NC_086157.1 Primary Assembly 117631150 na SUPER_6 assembled-molecule 6 Chromosome CM068890.1 = NC_086158.1 Primary Assembly 100805772 na SUPER_7 assembled-molecule 7 Chromosome CM068891.1 = NC_086159.1 Primary Assembly 84500290 na SUPER_8 assembled-molecule 8 Chromosome CM068892.1 = NC_086160.1 Primary Assembly 78784299 na SUPER_9 assembled-molecule 9 Chromosome CM068893.1 = NC_086161.1 Primary Assembly 27872941 na SUPER_10 assembled-molecule 10 Chromosome CM068894.1 = NC_086162.1 Primary Assembly 27116933 na SUPER_11 assembled-molecule 11 Chromosome CM068895.1 = NC_086163.1 Primary Assembly 25783037 na SUPER_12 assembled-molecule 12 Chromosome CM068896.1 = NC_086164.1 Primary Assembly 25223809 na SUPER_13 assembled-molecule 13 Chromosome CM068897.1 = NC_086165.1 Primary Assembly 23823530 na SUPER_14 assembled-molecule 14 Chromosome CM068898.1 = NC_086166.1 Primary Assembly 20477136 na SUPER_15 assembled-molecule 15 Chromosome CM068899.1 = NC_086167.1 Primary Assembly 17224316 na SUPER_16 assembled-molecule 16 Chromosome CM068900.1 = NC_086168.1 Primary Assembly 12371328 na SUPER_17 assembled-molecule 17 Chromosome CM068901.1 = NC_086169.1 Primary Assembly 11828921 na SUPER_18 assembled-molecule 18 Chromosome CM068902.1 = NC_086170.1 Primary Assembly 10138715 na H2.scaffold_123 unplaced-scaffold na na JAYKKZ010000020.1 = NW_026948290.1 Primary Assembly 37811 na H2.scaffold_157 unplaced-scaffold na na JAYKKZ010000021.1 = NW_026948291.1 Primary Assembly 14492 na H2.scaffold_141 unplaced-scaffold na na JAYKKZ010000022.1 = NW_026948292.1 Primary Assembly 30082 na H2.scaffold_95 unplaced-scaffold na na JAYKKZ010000023.1 = NW_026948293.1 Primary Assembly 47932 na H2.scaffold_118 unplaced-scaffold na na JAYKKZ010000024.1 = NW_026948294.1 Primary Assembly 41686 na H2.scaffold_49 unplaced-scaffold na na JAYKKZ010000025.1 = NW_026948295.1 Primary Assembly 97207 na H2.scaffold_113 unplaced-scaffold na na JAYKKZ010000026.1 = NW_026948296.1 Primary Assembly 43622 na H2.scaffold_46 unplaced-scaffold na na JAYKKZ010000027.1 = NW_026948297.1 Primary Assembly 102449 na H2.scaffold_91 unplaced-scaffold na na JAYKKZ010000028.1 = NW_026948298.1 Primary Assembly 50599 na H2.scaffold_74 unplaced-scaffold na na JAYKKZ010000029.1 = NW_026948299.1 Primary Assembly 67299 na H2.scaffold_97 unplaced-scaffold na na JAYKKZ010000030.1 = NW_026948300.1 Primary Assembly 47176 na H2.scaffold_106 unplaced-scaffold na na JAYKKZ010000031.1 = NW_026948301.1 Primary Assembly 45252 na H2.scaffold_85 unplaced-scaffold na na JAYKKZ010000032.1 = NW_026948302.1 Primary Assembly 57191 na H2.scaffold_136 unplaced-scaffold na na JAYKKZ010000033.1 = NW_026948303.1 Primary Assembly 31548 na H2.scaffold_37 unplaced-scaffold na na JAYKKZ010000034.1 = NW_026948304.1 Primary Assembly 130900 na H2.scaffold_142 unplaced-scaffold na na JAYKKZ010000035.1 = NW_026948305.1 Primary Assembly 29850 na H2.scaffold_57 unplaced-scaffold na na JAYKKZ010000036.1 = NW_026948306.1 Primary Assembly 83740 na H2.scaffold_120 unplaced-scaffold na na JAYKKZ010000037.1 = NW_026948307.1 Primary Assembly 39653 na H2.scaffold_127 unplaced-scaffold na na JAYKKZ010000038.1 = NW_026948308.1 Primary Assembly 35941 na H2.scaffold_33 unplaced-scaffold na na JAYKKZ010000039.1 = NW_026948309.1 Primary Assembly 139215 na H2.scaffold_77 unplaced-scaffold na na JAYKKZ010000040.1 = NW_026948310.1 Primary Assembly 65174 na H2.scaffold_153 unplaced-scaffold na na JAYKKZ010000041.1 = NW_026948311.1 Primary Assembly 19997 na H2.scaffold_158 unplaced-scaffold na na JAYKKZ010000042.1 = NW_026948312.1 Primary Assembly 1000 na H2.scaffold_61 unplaced-scaffold na na JAYKKZ010000043.1 = NW_026948313.1 Primary Assembly 77624 na H2.scaffold_149 unplaced-scaffold na na JAYKKZ010000044.1 = NW_026948314.1 Primary Assembly 24264 na H2.scaffold_130 unplaced-scaffold na na JAYKKZ010000045.1 = NW_026948315.1 Primary Assembly 33654 na H2.scaffold_55 unplaced-scaffold na na JAYKKZ010000046.1 = NW_026948316.1 Primary Assembly 90334 na H2.scaffold_52 unplaced-scaffold na na JAYKKZ010000047.1 = NW_026948317.1 Primary Assembly 91987 na H2.scaffold_145 unplaced-scaffold na na JAYKKZ010000048.1 = NW_026948318.1 Primary Assembly 27533 na H2.scaffold_69 unplaced-scaffold na na JAYKKZ010000049.1 = NW_026948319.1 Primary Assembly 72835 na H2.scaffold_152 unplaced-scaffold na na JAYKKZ010000050.1 = NW_026948320.1 Primary Assembly 23835 na H2.scaffold_66 unplaced-scaffold na na JAYKKZ010000051.1 = NW_026948321.1 Primary Assembly 74690 na H2.scaffold_87 unplaced-scaffold na na JAYKKZ010000052.1 = NW_026948322.1 Primary Assembly 56508 na H2.scaffold_62 unplaced-scaffold na na JAYKKZ010000053.1 = NW_026948323.1 Primary Assembly 77147 na H2.scaffold_124 unplaced-scaffold na na JAYKKZ010000054.1 = NW_026948324.1 Primary Assembly 37450 na H2.scaffold_82 unplaced-scaffold na na JAYKKZ010000055.1 = NW_026948325.1 Primary Assembly 60000 na H2.scaffold_51 unplaced-scaffold na na JAYKKZ010000056.1 = NW_026948326.1 Primary Assembly 94000 na H2.scaffold_146 unplaced-scaffold na na JAYKKZ010000057.1 = NW_026948327.1 Primary Assembly 27185 na H2.scaffold_99 unplaced-scaffold na na JAYKKZ010000058.1 = NW_026948328.1 Primary Assembly 47122 na H2.scaffold_139 unplaced-scaffold na na JAYKKZ010000059.1 = NW_026948329.1 Primary Assembly 30463 na H2.scaffold_86 unplaced-scaffold na na JAYKKZ010000060.1 = NW_026948330.1 Primary Assembly 57185 na H2.scaffold_27 unplaced-scaffold na na JAYKKZ010000061.1 = NW_026948331.1 Primary Assembly 174019 na H2.scaffold_80 unplaced-scaffold na na JAYKKZ010000062.1 = NW_026948332.1 Primary Assembly 61993 na H2.scaffold_73 unplaced-scaffold na na JAYKKZ010000063.1 = NW_026948333.1 Primary Assembly 67434 na H2.scaffold_43 unplaced-scaffold na na JAYKKZ010000064.1 = NW_026948334.1 Primary Assembly 112042 na H2.scaffold_96 unplaced-scaffold na na JAYKKZ010000065.1 = NW_026948335.1 Primary Assembly 47309 na H2.scaffold_114 unplaced-scaffold na na JAYKKZ010000066.1 = NW_026948336.1 Primary Assembly 42312 na H2.scaffold_131 unplaced-scaffold na na JAYKKZ010000067.1 = NW_026948337.1 Primary Assembly 33081 na H2.scaffold_58 unplaced-scaffold na na JAYKKZ010000068.1 = NW_026948338.1 Primary Assembly 81462 na H2.scaffold_42 unplaced-scaffold na na JAYKKZ010000069.1 = NW_026948339.1 Primary Assembly 114452 na H2.scaffold_47 unplaced-scaffold na na JAYKKZ010000070.1 = NW_026948340.1 Primary Assembly 101033 na H2.scaffold_137 unplaced-scaffold na na JAYKKZ010000071.1 = NW_026948341.1 Primary Assembly 31399 na H2.scaffold_110 unplaced-scaffold na na JAYKKZ010000072.1 = NW_026948342.1 Primary Assembly 44316 na H2.scaffold_76 unplaced-scaffold na na JAYKKZ010000073.1 = NW_026948343.1 Primary Assembly 65635 na H2.scaffold_36 unplaced-scaffold na na JAYKKZ010000074.1 = NW_026948344.1 Primary Assembly 131285 na H2.scaffold_143 unplaced-scaffold na na JAYKKZ010000075.1 = NW_026948345.1 Primary Assembly 29273 na H2.scaffold_128 unplaced-scaffold na na JAYKKZ010000076.1 = NW_026948346.1 Primary Assembly 35837 na H2.scaffold_109 unplaced-scaffold na na JAYKKZ010000077.1 = NW_026948347.1 Primary Assembly 44564 na H2.scaffold_54 unplaced-scaffold na na JAYKKZ010000078.1 = NW_026948348.1 Primary Assembly 91095 na H2.scaffold_39 unplaced-scaffold na na JAYKKZ010000079.1 = NW_026948349.1 Primary Assembly 117292 na H2.scaffold_154 unplaced-scaffold na na JAYKKZ010000080.1 = NW_026948350.1 Primary Assembly 19374 na H2.scaffold_105 unplaced-scaffold na na JAYKKZ010000081.1 = NW_026948351.1 Primary Assembly 45345 na H2.scaffold_155 unplaced-scaffold na na JAYKKZ010000082.1 = NW_026948352.1 Primary Assembly 15960 na H2.scaffold_103 unplaced-scaffold na na JAYKKZ010000083.1 = NW_026948353.1 Primary Assembly 45644 na H2.scaffold_132 unplaced-scaffold na na JAYKKZ010000084.1 = NW_026948354.1 Primary Assembly 32711 na H2.scaffold_101 unplaced-scaffold na na JAYKKZ010000085.1 = NW_026948355.1 Primary Assembly 46349 na H2.scaffold_60 unplaced-scaffold na na JAYKKZ010000086.1 = NW_026948356.1 Primary Assembly 79954 na H2.scaffold_125 unplaced-scaffold na na JAYKKZ010000087.1 = NW_026948357.1 Primary Assembly 36995 na H2.scaffold_72 unplaced-scaffold na na JAYKKZ010000088.1 = NW_026948358.1 Primary Assembly 68934 na H2.scaffold_144 unplaced-scaffold na na JAYKKZ010000089.1 = NW_026948359.1 Primary Assembly 28739 na H2.scaffold_150 unplaced-scaffold na na JAYKKZ010000090.1 = NW_026948360.1 Primary Assembly 24002 na H2.scaffold_88 unplaced-scaffold na na JAYKKZ010000091.1 = NW_026948361.1 Primary Assembly 53270 na H2.scaffold_35 unplaced-scaffold na na JAYKKZ010000092.1 = NW_026948362.1 Primary Assembly 136157 na H2.scaffold_44 unplaced-scaffold na na JAYKKZ010000093.1 = NW_026948363.1 Primary Assembly 109296 na H2.scaffold_93 unplaced-scaffold na na JAYKKZ010000094.1 = NW_026948364.1 Primary Assembly 48806 na H2.scaffold_126 unplaced-scaffold na na JAYKKZ010000095.1 = NW_026948365.1 Primary Assembly 36428 na H2.scaffold_147 unplaced-scaffold na na JAYKKZ010000096.1 = NW_026948366.1 Primary Assembly 25586 na H2.scaffold_50 unplaced-scaffold na na JAYKKZ010000097.1 = NW_026948367.1 Primary Assembly 96729 na H2.scaffold_26 unplaced-scaffold na na JAYKKZ010000098.1 = NW_026948368.1 Primary Assembly 199701 na H2.scaffold_115 unplaced-scaffold na na JAYKKZ010000099.1 = NW_026948369.1 Primary Assembly 41959 na H2.scaffold_59 unplaced-scaffold na na JAYKKZ010000100.1 = NW_026948370.1 Primary Assembly 80174 na H2.scaffold_63 unplaced-scaffold na na JAYKKZ010000101.1 = NW_026948371.1 Primary Assembly 75866 na H2.scaffold_40 unplaced-scaffold na na JAYKKZ010000102.1 = NW_026948372.1 Primary Assembly 117160 na H2.scaffold_111 unplaced-scaffold na na JAYKKZ010000103.1 = NW_026948373.1 Primary Assembly 44147 na H2.scaffold_129 unplaced-scaffold na na JAYKKZ010000104.1 = NW_026948374.1 Primary Assembly 33738 na H2.scaffold_29 unplaced-scaffold na na JAYKKZ010000105.1 = NW_026948375.1 Primary Assembly 172529 na H2.scaffold_30 unplaced-scaffold na na JAYKKZ010000106.1 = NW_026948376.1 Primary Assembly 170572 na H2.scaffold_79 unplaced-scaffold na na JAYKKZ010000107.1 = NW_026948377.1 Primary Assembly 62437 na H2.scaffold_38 unplaced-scaffold na na JAYKKZ010000108.1 = NW_026948378.1 Primary Assembly 117694 na H2.scaffold_70 unplaced-scaffold na na JAYKKZ010000109.1 = NW_026948379.1 Primary Assembly 71417 na H2.scaffold_108 unplaced-scaffold na na JAYKKZ010000110.1 = NW_026948380.1 Primary Assembly 45203 na H2.scaffold_112 unplaced-scaffold na na JAYKKZ010000111.1 = NW_026948381.1 Primary Assembly 43988 na H2.scaffold_104 unplaced-scaffold na na JAYKKZ010000112.1 = NW_026948382.1 Primary Assembly 45618 na H2.scaffold_67 unplaced-scaffold na na JAYKKZ010000113.1 = NW_026948383.1 Primary Assembly 74478 na H2.scaffold_83 unplaced-scaffold na na JAYKKZ010000114.1 = NW_026948384.1 Primary Assembly 59722 na H2.scaffold_92 unplaced-scaffold na na JAYKKZ010000115.1 = NW_026948385.1 Primary Assembly 49610 na H2.scaffold_133 unplaced-scaffold na na JAYKKZ010000116.1 = NW_026948386.1 Primary Assembly 32517 na H2.scaffold_102 unplaced-scaffold na na JAYKKZ010000117.1 = NW_026948387.1 Primary Assembly 46145 na H2.scaffold_64 unplaced-scaffold na na JAYKKZ010000118.1 = NW_026948388.1 Primary Assembly 75111 na H2.scaffold_65 unplaced-scaffold na na JAYKKZ010000119.1 = NW_026948389.1 Primary Assembly 74860 na H2.scaffold_23 unplaced-scaffold na na JAYKKZ010000120.1 = NW_026948390.1 Primary Assembly 225635 na H2.scaffold_100 unplaced-scaffold na na JAYKKZ010000121.1 = NW_026948391.1 Primary Assembly 46570 na H2.scaffold_84 unplaced-scaffold na na JAYKKZ010000122.1 = NW_026948392.1 Primary Assembly 59423 na H2.scaffold_68 unplaced-scaffold na na JAYKKZ010000123.1 = NW_026948393.1 Primary Assembly 73540 na H2.scaffold_122 unplaced-scaffold na na JAYKKZ010000124.1 = NW_026948394.1 Primary Assembly 38874 na H2.scaffold_117 unplaced-scaffold na na JAYKKZ010000125.1 = NW_026948395.1 Primary Assembly 41783 na H2.scaffold_94 unplaced-scaffold na na JAYKKZ010000126.1 = NW_026948396.1 Primary Assembly 48122 na H2.scaffold_41 unplaced-scaffold na na JAYKKZ010000127.1 = NW_026948397.1 Primary Assembly 114546 na H2.scaffold_48 unplaced-scaffold na na JAYKKZ010000128.1 = NW_026948398.1 Primary Assembly 99081 na H2.scaffold_140 unplaced-scaffold na na JAYKKZ010000129.1 = NW_026948399.1 Primary Assembly 30100 na H2.scaffold_151 unplaced-scaffold na na JAYKKZ010000130.1 = NW_026948400.1 Primary Assembly 23857 na H2.scaffold_71 unplaced-scaffold na na JAYKKZ010000131.1 = NW_026948401.1 Primary Assembly 69135 na H2.scaffold_81 unplaced-scaffold na na JAYKKZ010000132.1 = NW_026948402.1 Primary Assembly 60669 na H2.scaffold_148 unplaced-scaffold na na JAYKKZ010000133.1 = NW_026948403.1 Primary Assembly 25288 na H2.scaffold_138 unplaced-scaffold na na JAYKKZ010000134.1 = NW_026948404.1 Primary Assembly 31049 na H2.scaffold_78 unplaced-scaffold na na JAYKKZ010000135.1 = NW_026948405.1 Primary Assembly 62942 na H2.scaffold_75 unplaced-scaffold na na JAYKKZ010000136.1 = NW_026948406.1 Primary Assembly 65793 na H2.scaffold_107 unplaced-scaffold na na JAYKKZ010000137.1 = NW_026948407.1 Primary Assembly 45245 na H2.scaffold_156 unplaced-scaffold na na JAYKKZ010000138.1 = NW_026948408.1 Primary Assembly 15229 na H2.scaffold_90 unplaced-scaffold na na JAYKKZ010000139.1 = NW_026948409.1 Primary Assembly 50915 na H2.scaffold_135 unplaced-scaffold na na JAYKKZ010000140.1 = NW_026948410.1 Primary Assembly 31757 na H2.scaffold_121 unplaced-scaffold na na JAYKKZ010000141.1 = NW_026948411.1 Primary Assembly 39165 na H2.scaffold_56 unplaced-scaffold na na JAYKKZ010000142.1 = NW_026948412.1 Primary Assembly 89000 na H2.scaffold_89 unplaced-scaffold na na JAYKKZ010000143.1 = NW_026948413.1 Primary Assembly 51390 na H2.scaffold_18 unplaced-scaffold na na JAYKKZ010000144.1 = NW_026948414.1 Primary Assembly 374199 na H2.scaffold_119 unplaced-scaffold na na JAYKKZ010000145.1 = NW_026948415.1 Primary Assembly 39773 na H2.scaffold_45 unplaced-scaffold na na JAYKKZ010000146.1 = NW_026948416.1 Primary Assembly 107506 na H2.scaffold_53 unplaced-scaffold na na JAYKKZ010000147.1 = NW_026948417.1 Primary Assembly 91398 na H2.scaffold_116 unplaced-scaffold na na JAYKKZ010000148.1 = NW_026948418.1 Primary Assembly 41886 na H2.scaffold_98 unplaced-scaffold na na JAYKKZ010000149.1 = NW_026948419.1 Primary Assembly 47128 na H2.scaffold_134 unplaced-scaffold na na JAYKKZ010000150.1 = NW_026948420.1 Primary Assembly 31967 na ptg000001l_rotated assembled-molecule MT Mitochondrion CM069494.1 <> na non-nuclear 17561 na