track assembly
longLabel Assembly
shortLabel Assembly
visibility pack
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.assembly.bb
type bigBed 6
html html/GCA_032444005.1_aRanImi1.pri.assembly
searchIndex name
searchTrix ixIxx/GCA_032444005.1_aRanImi1.pri.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track gap
longLabel AGP gap
shortLabel Gap (AGP defined)
visibility dense
color 0,0,0
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.gap.bb
type bigBed 4
group map
html html/GCA_032444005.1_aRanImi1.pri.gap

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility full
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.gc5Base.bw
html html/GCA_032444005.1_aRanImi1.pri.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCA_032444005.1_aRanImi1.pri.tanDups

    track gapOverlap
    parent tanDups on
    shortLabel Gap Overlaps
    longLabel Paired exactly identical sequence on each side of a gap
    bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.gapOverlap.bb
    type bigBed 12

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.rmsk.bb
xrefDataUrl bbi/GCA_032444005.1_aRanImi1.pri.rmsk.align.bb
maxWindowToDraw 5000000
html html/GCA_032444005.1_aRanImi1.pri.repeatMasker

track repeatModeler
shortLabel RepeatModeler
longLabel RepeatModeler Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.rModel.bb
xrefDataUrl bbi/GCA_032444005.1_aRanImi1.pri.rModel.align.bb
maxWindowToDraw 5000000
html html/GCA_032444005.1_aRanImi1.pri.repeatModeler

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.simpleRepeat.bb
html html/GCA_032444005.1_aRanImi1.pri.simpleRepeat

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.windowMasker.bb
html html/GCA_032444005.1_aRanImi1.pri.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility dense
type bigBed 3
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.allGaps.bb
html html/GCA_032444005.1_aRanImi1.pri.allGaps

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCA_032444005.1_aRanImi1.pri.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCA_032444005.1_aRanImi1.pri.xenoRefGene.ix
html html/GCA_032444005.1_aRanImi1.pri.xenoRefGene