# Assembly name: bPasSan2.pri # Organism name: Passerculus sandwichensis (Savannah sparrow) # Isolate: bPasSan2 # Sex: female # Taxid: 161624 # BioSample: SAMN35784765 # BioProject: PRJNA1006784 # Submitter: Vertebrate Genomes Project # Date: 2023-09-25 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAVKUW01 # Assembly method: HiFiasm v. 0.18.8+galaxy1; Bionano Solve v. 3.7; yahs v. 1.2a.2 + galaxy0 # Expected final version: no # Genome coverage: 46.33x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_031885435.1 # Linked assembly: GCA_031876245.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_031885445.1 Primary Assembly ## GCA_031885455.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM063127.1 <> na Primary Assembly 157118810 na SUPER_2 assembled-molecule 2 Chromosome CM063128.1 <> na Primary Assembly 118505492 na SUPER_3 assembled-molecule 3 Chromosome CM063129.1 <> na Primary Assembly 116753934 na SUPER_4 assembled-molecule 4 Chromosome CM063130.1 <> na Primary Assembly 74669597 na SUPER_5 assembled-molecule 5 Chromosome CM063131.1 <> na Primary Assembly 73843927 na SUPER_6 assembled-molecule 6 Chromosome CM063132.1 <> na Primary Assembly 64395891 na SUPER_7 assembled-molecule 7 Chromosome CM063133.1 <> na Primary Assembly 42001592 na SUPER_8 assembled-molecule 8 Chromosome CM063134.1 <> na Primary Assembly 36609516 na SUPER_9 assembled-molecule 9 Chromosome CM063135.1 <> na Primary Assembly 31469236 na SUPER_10 assembled-molecule 10 Chromosome CM063136.1 <> na Primary Assembly 26882971 na SUPER_11 assembled-molecule 11 Chromosome CM063137.1 <> na Primary Assembly 23780850 na SUPER_12 assembled-molecule 12 Chromosome CM063138.1 <> na Primary Assembly 21993524 na SUPER_13 assembled-molecule 13 Chromosome CM063139.1 <> na Primary Assembly 21428435 na SUPER_14 assembled-molecule 14 Chromosome CM063140.1 <> na Primary Assembly 20643668 na SUPER_15 assembled-molecule 15 Chromosome CM063141.1 <> na Primary Assembly 20089060 na SUPER_16 assembled-molecule 16 Chromosome CM063142.1 <> na Primary Assembly 17702597 na SUPER_17 assembled-molecule 17 Chromosome CM063143.1 <> na Primary Assembly 16457082 na SUPER_18 assembled-molecule 18 Chromosome CM063144.1 <> na Primary Assembly 15111997 na SUPER_19 assembled-molecule 19 Chromosome CM063145.1 <> na Primary Assembly 13871451 na SUPER_20 assembled-molecule 20 Chromosome CM063146.1 <> na Primary Assembly 12786134 na SUPER_21 assembled-molecule 21 Chromosome CM063147.1 <> na Primary Assembly 12843575 na SUPER_22 assembled-molecule 22 Chromosome CM063148.1 <> na Primary Assembly 12734069 na SUPER_23 assembled-molecule 23 Chromosome CM063149.1 <> na Primary Assembly 12400718 na SUPER_24 assembled-molecule 24 Chromosome CM063150.1 <> na Primary Assembly 11942631 na SUPER_25 assembled-molecule 25 Chromosome CM063151.1 <> na Primary Assembly 10884504 na SUPER_26 assembled-molecule 26 Chromosome CM063152.1 <> na Primary Assembly 10877822 na SUPER_27 assembled-molecule 27 Chromosome CM063153.1 <> na Primary Assembly 10380312 na SUPER_28 assembled-molecule 28 Chromosome CM063154.1 <> na Primary Assembly 10366099 na SUPER_29 assembled-molecule 29 Chromosome CM063155.1 <> na Primary Assembly 10159921 na SUPER_30 assembled-molecule 30 Chromosome CM063156.1 <> na Primary Assembly 9602074 na SUPER_31 assembled-molecule 31 Chromosome CM063157.1 <> na Primary Assembly 9582722 na SUPER_32 assembled-molecule 32 Chromosome CM063158.1 <> na Primary Assembly 9137761 na SUPER_33 assembled-molecule 33 Chromosome CM063159.1 <> na Primary Assembly 8750729 na SUPER_34 assembled-molecule 34 Chromosome CM063160.1 <> na Primary Assembly 8359361 na SUPER_35 assembled-molecule 35 Chromosome CM063161.1 <> na Primary Assembly 7938997 na SUPER_36 assembled-molecule 36 Chromosome CM063162.1 <> na Primary Assembly 7587391 na SUPER_37 assembled-molecule 37 Chromosome CM063163.1 <> na Primary Assembly 7277738 na SUPER_38 assembled-molecule 38 Chromosome CM063164.1 <> na Primary Assembly 6864239 na SUPER_39 assembled-molecule 39 Chromosome CM063165.1 <> na Primary Assembly 1118955 na SUPER_W assembled-molecule W Chromosome CM063166.1 <> na Primary Assembly 38172582 na SUPER_Z assembled-molecule Z Chromosome CM063167.1 <> na Primary Assembly 81238976 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JAVKUW010000005.1 <> na Primary Assembly 166981 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JAVKUW010000025.1 <> na Primary Assembly 100785 na SUPER_24_unloc_1 unlocalized-scaffold 24 Chromosome JAVKUW010000030.1 <> na Primary Assembly 80768 na SUPER_24_unloc_2 unlocalized-scaffold 24 Chromosome JAVKUW010000031.1 <> na Primary Assembly 60182 na SUPER_24_unloc_3 unlocalized-scaffold 24 Chromosome JAVKUW010000032.1 <> na Primary Assembly 47632 na SUPER_24_unloc_4 unlocalized-scaffold 24 Chromosome JAVKUW010000033.1 <> na Primary Assembly 34628 na SUPER_30_unloc_1 unlocalized-scaffold 30 Chromosome JAVKUW010000040.1 <> na Primary Assembly 87259 na SUPER_30_unloc_2 unlocalized-scaffold 30 Chromosome JAVKUW010000041.1 <> na Primary Assembly 80553 na SUPER_30_unloc_3 unlocalized-scaffold 30 Chromosome JAVKUW010000042.1 <> na Primary Assembly 74550 na SUPER_37_unloc_1 unlocalized-scaffold 37 Chromosome JAVKUW010000050.1 <> na Primary Assembly 100428 na SUPER_39_unloc_1 unlocalized-scaffold 39 Chromosome JAVKUW010000053.1 <> na Primary Assembly 38839 na scaffold_165 unplaced-scaffold na na JAVKUW010000054.1 <> na Primary Assembly 34361 na scaffold_187 unplaced-scaffold na na JAVKUW010000055.1 <> na Primary Assembly 23066 na scaffold_179 unplaced-scaffold na na JAVKUW010000056.1 <> na Primary Assembly 27229 na scaffold_188 unplaced-scaffold na na JAVKUW010000057.1 <> na Primary Assembly 23031 na scaffold_40 unplaced-scaffold na na JAVKUW010000058.1 <> na Primary Assembly 7435929 na scaffold_132 unplaced-scaffold na na JAVKUW010000059.1 <> na Primary Assembly 66116 na scaffold_80 unplaced-scaffold na na JAVKUW010000060.1 <> na Primary Assembly 254159 na scaffold_57 unplaced-scaffold na na JAVKUW010000061.1 <> na Primary Assembly 806455 na scaffold_180 unplaced-scaffold na na JAVKUW010000062.1 <> na Primary Assembly 26502 na scaffold_156 unplaced-scaffold na na JAVKUW010000063.1 <> na Primary Assembly 37164 na scaffold_166 unplaced-scaffold na na JAVKUW010000064.1 <> na Primary Assembly 34121 na scaffold_183 unplaced-scaffold na na JAVKUW010000065.1 <> na Primary Assembly 23914 na scaffold_162 unplaced-scaffold na na JAVKUW010000066.1 <> na Primary Assembly 34863 na scaffold_34 unplaced-scaffold na na JAVKUW010000067.1 <> na Primary Assembly 8470825 na scaffold_135 unplaced-scaffold na na JAVKUW010000068.1 <> na Primary Assembly 64398 na scaffold_76 unplaced-scaffold na na JAVKUW010000069.1 <> na Primary Assembly 301863 na scaffold_155 unplaced-scaffold na na JAVKUW010000070.1 <> na Primary Assembly 37208 na scaffold_184 unplaced-scaffold na na JAVKUW010000071.1 <> na Primary Assembly 23881 na scaffold_88 unplaced-scaffold na na JAVKUW010000072.1 <> na Primary Assembly 180757 na scaffold_169 unplaced-scaffold na na JAVKUW010000073.1 <> na Primary Assembly 33600 na scaffold_129 unplaced-scaffold na na JAVKUW010000074.1 <> na Primary Assembly 69507 na scaffold_148 unplaced-scaffold na na JAVKUW010000075.1 <> na Primary Assembly 43348 na scaffold_172 unplaced-scaffold na na JAVKUW010000076.1 <> na Primary Assembly 31720 na scaffold_176 unplaced-scaffold na na JAVKUW010000077.1 <> na Primary Assembly 30543 na scaffold_181 unplaced-scaffold na na JAVKUW010000078.1 <> na Primary Assembly 24300 na scaffold_159 unplaced-scaffold na na JAVKUW010000079.1 <> na Primary Assembly 35967 na scaffold_173 unplaced-scaffold na na JAVKUW010000080.1 <> na Primary Assembly 31516 na scaffold_146 unplaced-scaffold na na JAVKUW010000081.1 <> na Primary Assembly 46410 na scaffold_121 unplaced-scaffold na na JAVKUW010000082.1 <> na Primary Assembly 85512 na scaffold_142 unplaced-scaffold na na JAVKUW010000083.1 <> na Primary Assembly 51463 na scaffold_134 unplaced-scaffold na na JAVKUW010000084.1 <> na Primary Assembly 64447 na scaffold_161 unplaced-scaffold na na JAVKUW010000085.1 <> na Primary Assembly 35170 na scaffold_154 unplaced-scaffold na na JAVKUW010000086.1 <> na Primary Assembly 38640 na scaffold_191 unplaced-scaffold na na JAVKUW010000087.1 <> na Primary Assembly 19286 na scaffold_189 unplaced-scaffold na na JAVKUW010000088.1 <> na Primary Assembly 20998 na scaffold_46 unplaced-scaffold na na JAVKUW010000089.1 <> na Primary Assembly 3213129 na scaffold_178 unplaced-scaffold na na JAVKUW010000090.1 <> na Primary Assembly 28207 na scaffold_42 unplaced-scaffold na na JAVKUW010000091.1 <> na Primary Assembly 7097830 na scaffold_119 unplaced-scaffold na na JAVKUW010000092.1 <> na Primary Assembly 89528 na scaffold_39 unplaced-scaffold na na JAVKUW010000093.1 <> na Primary Assembly 7534240 na scaffold_35 unplaced-scaffold na na JAVKUW010000094.1 <> na Primary Assembly 7944438 na scaffold_124 unplaced-scaffold na na JAVKUW010000095.1 <> na Primary Assembly 75411 na scaffold_170 unplaced-scaffold na na JAVKUW010000096.1 <> na Primary Assembly 33274 na scaffold_182 unplaced-scaffold na na JAVKUW010000097.1 <> na Primary Assembly 24136 na scaffold_190 unplaced-scaffold na na JAVKUW010000098.1 <> na Primary Assembly 20202 na scaffold_163 unplaced-scaffold na na JAVKUW010000099.1 <> na Primary Assembly 34685 na scaffold_71 unplaced-scaffold na na JAVKUW010000100.1 <> na Primary Assembly 429809 na scaffold_186 unplaced-scaffold na na JAVKUW010000101.1 <> na Primary Assembly 23769 na scaffold_138 unplaced-scaffold na na JAVKUW010000102.1 <> na Primary Assembly 53982 na scaffold_78 unplaced-scaffold na na JAVKUW010000103.1 <> na Primary Assembly 275387 na scaffold_171 unplaced-scaffold na na JAVKUW010000104.1 <> na Primary Assembly 32139 na scaffold_149 unplaced-scaffold na na JAVKUW010000105.1 <> na Primary Assembly 42143 na scaffold_174 unplaced-scaffold na na JAVKUW010000106.1 <> na Primary Assembly 31461 na scaffold_185 unplaced-scaffold na na JAVKUW010000107.1 <> na Primary Assembly 23832 na scaffold_167 unplaced-scaffold na na JAVKUW010000108.1 <> na Primary Assembly 33681 na scaffold_127 unplaced-scaffold na na JAVKUW010000109.1 <> na Primary Assembly 70740 na scaffold_168 unplaced-scaffold na na JAVKUW010000110.1 <> na Primary Assembly 33651 na ptg000022l_rc_rotated assembled-molecule MT Mitochondrion CM063168.1 <> na non-nuclear 16778 na