# Assembly name: BD_1.0 # Organism name: Canis lupus familiaris (dog) # Infraspecific name: breed=Bernese Mountain Dog # Isolate: BD # Sex: female # Taxid: 9615 # BioSample: SAMN31138971 # BioProject: PRJNA886700 # Submitter: University of Michigan # Date: 2023-08-31 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARDRF01 # Assembly method: Flye v. 2.3 # Expected final version: yes # Reference guided assembly: GCF_011100685.1 # Genome coverage: 20x # Sequencing technology: Illumina HiSeq; Oxford Nanopore PromethION # GenBank assembly accession: GCA_031010765.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_031010975.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM061962.1 <> na Primary Assembly 122858133 na chr2 assembled-molecule 2 Chromosome CM061963.1 <> na Primary Assembly 84215781 na chr3 assembled-molecule 3 Chromosome CM061964.1 <> na Primary Assembly 92012262 na chr4 assembled-molecule 4 Chromosome CM061965.1 <> na Primary Assembly 89022527 na chr5 assembled-molecule 5 Chromosome CM061966.1 <> na Primary Assembly 89262980 na chr6 assembled-molecule 6 Chromosome CM061967.1 <> na Primary Assembly 77810008 na chr7 assembled-molecule 7 Chromosome CM061968.1 <> na Primary Assembly 80968868 na chr8 assembled-molecule 8 Chromosome CM061969.1 <> na Primary Assembly 75109598 na chr9 assembled-molecule 9 Chromosome CM061970.1 <> na Primary Assembly 61213915 na chr10 assembled-molecule 10 Chromosome CM061971.1 <> na Primary Assembly 70382560 na chr11 assembled-molecule 11 Chromosome CM061972.1 <> na Primary Assembly 73859355 na chr12 assembled-molecule 12 Chromosome CM061973.1 <> na Primary Assembly 72716464 na chr13 assembled-molecule 13 Chromosome CM061974.1 <> na Primary Assembly 63592836 na chr14 assembled-molecule 14 Chromosome CM061975.1 <> na Primary Assembly 60796995 na chr15 assembled-molecule 15 Chromosome CM061976.1 <> na Primary Assembly 64459829 na chr16 assembled-molecule 16 Chromosome CM061977.1 <> na Primary Assembly 59140275 na chr17 assembled-molecule 17 Chromosome CM061978.1 <> na Primary Assembly 64457116 na chr18 assembled-molecule 18 Chromosome CM061979.1 <> na Primary Assembly 55987386 na chr19 assembled-molecule 19 Chromosome CM061980.1 <> na Primary Assembly 54618276 na chr20 assembled-molecule 20 Chromosome CM061981.1 <> na Primary Assembly 58378547 na chr21 assembled-molecule 21 Chromosome CM061982.1 <> na Primary Assembly 50907984 na chr22 assembled-molecule 22 Chromosome CM061983.1 <> na Primary Assembly 61447328 na chr23 assembled-molecule 23 Chromosome CM061984.1 <> na Primary Assembly 52897791 na chr24 assembled-molecule 24 Chromosome CM061985.1 <> na Primary Assembly 48049665 na chr25 assembled-molecule 25 Chromosome CM061986.1 <> na Primary Assembly 51550838 na chr26 assembled-molecule 26 Chromosome CM061987.1 <> na Primary Assembly 38644740 na chr27 assembled-molecule 27 Chromosome CM061988.1 <> na Primary Assembly 46387579 na chr28 assembled-molecule 28 Chromosome CM061989.1 <> na Primary Assembly 41466802 na chr29 assembled-molecule 29 Chromosome CM061990.1 <> na Primary Assembly 42038384 na chr30 assembled-molecule 30 Chromosome CM061991.1 <> na Primary Assembly 40389974 na chr31 assembled-molecule 31 Chromosome CM061992.1 <> na Primary Assembly 39799943 na chr32 assembled-molecule 32 Chromosome CM061993.1 <> na Primary Assembly 39770799 na chr33 assembled-molecule 33 Chromosome CM061994.1 <> na Primary Assembly 31671998 na chr34 assembled-molecule 34 Chromosome CM061995.1 <> na Primary Assembly 42244019 na chr35 assembled-molecule 35 Chromosome CM061996.1 <> na Primary Assembly 27330958 na chr36 assembled-molecule 36 Chromosome CM061997.1 <> na Primary Assembly 31011464 na chr37 assembled-molecule 37 Chromosome CM061998.1 <> na Primary Assembly 30889911 na chr38 assembled-molecule 38 Chromosome CM061999.1 <> na Primary Assembly 24631428 na chrX assembled-molecule X Chromosome CM062000.1 <> na Primary Assembly 124087801 na contig_1 unplaced-scaffold na na JARDRF010000040.1 <> na Primary Assembly 16982 na contig_10 unplaced-scaffold na na JARDRF010000049.1 <> na Primary Assembly 43627 na contig_1002_12834_14291_+ unplaced-scaffold na na JARDRF010000062.1 <> na Primary Assembly 1456 na contig_1004_1_7379_+ unplaced-scaffold na na JARDRF010000063.1 <> na Primary Assembly 7375 na contig_11 unplaced-scaffold na na JARDRF010000050.1 <> na Primary Assembly 109663 na contig_12 unplaced-scaffold na na JARDRF010000051.1 <> na Primary Assembly 5551 na contig_1211 unplaced-scaffold na na JARDRF010000064.1 <> na Primary Assembly 79832 na contig_13 unplaced-scaffold na na JARDRF010000052.1 <> na Primary Assembly 60263 na contig_1302 unplaced-scaffold na na JARDRF010000065.1 <> na Primary Assembly 1754 na contig_14 unplaced-scaffold na na JARDRF010000053.1 <> na Primary Assembly 11139 na contig_141 unplaced-scaffold na na JARDRF010000066.1 <> na Primary Assembly 65439 na contig_1443 unplaced-scaffold na na JARDRF010000067.1 <> na Primary Assembly 4564 na contig_1498 unplaced-scaffold na na JARDRF010000068.1 <> na Primary Assembly 18275 na contig_15 unplaced-scaffold na na JARDRF010000054.1 <> na Primary Assembly 64324 na contig_1505 unplaced-scaffold na na JARDRF010000069.1 <> na Primary Assembly 10407 na contig_1531 unplaced-scaffold na na JARDRF010000070.1 <> na Primary Assembly 26950 na contig_1532 unplaced-scaffold na na JARDRF010000071.1 <> na Primary Assembly 39019 na contig_1549 unplaced-scaffold na na JARDRF010000072.1 <> na Primary Assembly 2373 na contig_1591 unplaced-scaffold na na JARDRF010000073.1 <> na Primary Assembly 5400 na contig_1594 unplaced-scaffold na na JARDRF010000074.1 <> na Primary Assembly 9592 na contig_16 unplaced-scaffold na na JARDRF010000055.1 <> na Primary Assembly 18754 na contig_1614 unplaced-scaffold na na JARDRF010000075.1 <> na Primary Assembly 2223 na contig_1620 unplaced-scaffold na na JARDRF010000076.1 <> na Primary Assembly 19455 na contig_1621 unplaced-scaffold na na JARDRF010000077.1 <> na Primary Assembly 10860 na contig_1689_1_5406_+ unplaced-scaffold na na JARDRF010000078.1 <> na Primary Assembly 5402 na contig_1689_79445_93234_+ unplaced-scaffold na na JARDRF010000079.1 <> na Primary Assembly 13759 na contig_17 unplaced-scaffold na na JARDRF010000056.1 <> na Primary Assembly 7219 na contig_18 unplaced-scaffold na na JARDRF010000057.1 <> na Primary Assembly 19714 na contig_1802 unplaced-scaffold na na JARDRF010000080.1 <> na Primary Assembly 23249 na contig_1896_138031_157446_+ unplaced-scaffold na na JARDRF010000081.1 <> na Primary Assembly 19389 na contig_19 unplaced-scaffold na na JARDRF010000058.1 <> na Primary Assembly 69968 na contig_1925 unplaced-scaffold na na JARDRF010000082.1 <> na Primary Assembly 7751 na contig_1987 unplaced-scaffold na na JARDRF010000083.1 <> na Primary Assembly 32241 na contig_1992 unplaced-scaffold na na JARDRF010000084.1 <> na Primary Assembly 13834 na contig_2 unplaced-scaffold na na JARDRF010000041.1 <> na Primary Assembly 11540 na contig_20 unplaced-scaffold na na JARDRF010000059.1 <> na Primary Assembly 88510 na contig_2007 unplaced-scaffold na na JARDRF010000085.1 <> na Primary Assembly 4877 na contig_2011 unplaced-scaffold na na JARDRF010000086.1 <> na Primary Assembly 8639 na contig_2046 unplaced-scaffold na na JARDRF010000087.1 <> na Primary Assembly 198311 na contig_2074 unplaced-scaffold na na JARDRF010000088.1 <> na Primary Assembly 13584 na contig_2081 unplaced-scaffold na na JARDRF010000089.1 <> na Primary Assembly 63173 na contig_21 unplaced-scaffold na na JARDRF010000060.1 <> na Primary Assembly 5015 na contig_2134 unplaced-scaffold na na JARDRF010000090.1 <> na Primary Assembly 40201 na contig_2151 unplaced-scaffold na na JARDRF010000091.1 <> na Primary Assembly 22709 na contig_22 unplaced-scaffold na na JARDRF010000061.1 <> na Primary Assembly 73722 na contig_2238 unplaced-scaffold na na JARDRF010000092.1 <> na Primary Assembly 9114 na contig_2248 unplaced-scaffold na na JARDRF010000093.1 <> na Primary Assembly 11338 na contig_2312 unplaced-scaffold na na JARDRF010000094.1 <> na Primary Assembly 1287 na contig_2339 unplaced-scaffold na na JARDRF010000095.1 <> na Primary Assembly 29899 na contig_2345 unplaced-scaffold na na JARDRF010000096.1 <> na Primary Assembly 2628 na contig_2349 unplaced-scaffold na na JARDRF010000097.1 <> na Primary Assembly 10692 na contig_2350 unplaced-scaffold na na JARDRF010000098.1 <> na Primary Assembly 10883 na contig_2377 unplaced-scaffold na na JARDRF010000099.1 <> na Primary Assembly 32529 na contig_2409 unplaced-scaffold na na JARDRF010000100.1 <> na Primary Assembly 38501 na contig_2552 unplaced-scaffold na na JARDRF010000101.1 <> na Primary Assembly 17135 na contig_2566 unplaced-scaffold na na JARDRF010000102.1 <> na Primary Assembly 103684 na contig_2623_2854865_2883721_+ unplaced-scaffold na na JARDRF010000103.1 <> na Primary Assembly 28854 na contig_2710 unplaced-scaffold na na JARDRF010000104.1 <> na Primary Assembly 24543 na contig_2727 unplaced-scaffold na na JARDRF010000105.1 <> na Primary Assembly 18590 na contig_2869 unplaced-scaffold na na JARDRF010000106.1 <> na Primary Assembly 60967 na contig_2915 unplaced-scaffold na na JARDRF010000107.1 <> na Primary Assembly 50513 na contig_2924 unplaced-scaffold na na JARDRF010000108.1 <> na Primary Assembly 11508 na contig_2990_20028_20699_+ unplaced-scaffold na na JARDRF010000109.1 <> na Primary Assembly 656 na contig_3 unplaced-scaffold na na JARDRF010000042.1 <> na Primary Assembly 139388 na contig_3041 unplaced-scaffold na na JARDRF010000110.1 <> na Primary Assembly 10407 na contig_3075 unplaced-scaffold na na JARDRF010000111.1 <> na Primary Assembly 6101 na contig_3077 unplaced-scaffold na na JARDRF010000112.1 <> na Primary Assembly 7738 na contig_3091 unplaced-scaffold na na JARDRF010000113.1 <> na Primary Assembly 12621 na contig_3102 unplaced-scaffold na na JARDRF010000114.1 <> na Primary Assembly 9915 na contig_3104 unplaced-scaffold na na JARDRF010000115.1 <> na Primary Assembly 8706 na contig_3123 unplaced-scaffold na na JARDRF010000116.1 <> na Primary Assembly 38610 na contig_3144 unplaced-scaffold na na JARDRF010000117.1 <> na Primary Assembly 10051 na contig_3179 unplaced-scaffold na na JARDRF010000118.1 <> na Primary Assembly 44822 na contig_3185 unplaced-scaffold na na JARDRF010000119.1 <> na Primary Assembly 8959 na contig_3199_1_16759_+ unplaced-scaffold na na JARDRF010000120.1 <> na Primary Assembly 16764 na contig_3201 unplaced-scaffold na na JARDRF010000121.1 <> na Primary Assembly 6726 na contig_3211 unplaced-scaffold na na JARDRF010000122.1 <> na Primary Assembly 17564 na contig_3214 unplaced-scaffold na na JARDRF010000123.1 <> na Primary Assembly 11828 na contig_3227 unplaced-scaffold na na JARDRF010000124.1 <> na Primary Assembly 11884 na contig_3255 unplaced-scaffold na na JARDRF010000125.1 <> na Primary Assembly 5440 na contig_3258 unplaced-scaffold na na JARDRF010000126.1 <> na Primary Assembly 6640 na contig_3263 unplaced-scaffold na na JARDRF010000127.1 <> na Primary Assembly 12126 na contig_3360 unplaced-scaffold na na JARDRF010000128.1 <> na Primary Assembly 7627 na contig_3381 unplaced-scaffold na na JARDRF010000129.1 <> na Primary Assembly 12251 na contig_3384_32973_39698_+ unplaced-scaffold na na JARDRF010000130.1 <> na Primary Assembly 6724 na contig_3400 unplaced-scaffold na na JARDRF010000131.1 <> na Primary Assembly 11753 na contig_3456_1_85491_+ unplaced-scaffold na na JARDRF010000132.1 <> na Primary Assembly 85527 na contig_3476 unplaced-scaffold na na JARDRF010000133.1 <> na Primary Assembly 9184 na contig_3480 unplaced-scaffold na na JARDRF010000134.1 <> na Primary Assembly 7551 na contig_3481 unplaced-scaffold na na JARDRF010000135.1 <> na Primary Assembly 166099 na contig_3503 unplaced-scaffold na na JARDRF010000136.1 <> na Primary Assembly 8156 na contig_3507 unplaced-scaffold na na JARDRF010000137.1 <> na Primary Assembly 2299 na contig_3536 unplaced-scaffold na na JARDRF010000138.1 <> na Primary Assembly 23646 na contig_3569 unplaced-scaffold na na JARDRF010000139.1 <> na Primary Assembly 19211 na contig_3598 unplaced-scaffold na na JARDRF010000140.1 <> na Primary Assembly 91674 na contig_3608 unplaced-scaffold na na JARDRF010000141.1 <> na Primary Assembly 26991 na contig_3616 unplaced-scaffold na na JARDRF010000142.1 <> na Primary Assembly 113891 na contig_3705 unplaced-scaffold na na JARDRF010000143.1 <> na Primary Assembly 43881 na contig_3748 unplaced-scaffold na na JARDRF010000144.1 <> na Primary Assembly 6250 na contig_3756 unplaced-scaffold na na JARDRF010000145.1 <> na Primary Assembly 7827 na contig_3759 unplaced-scaffold na na JARDRF010000146.1 <> na Primary Assembly 4050 na contig_3760 unplaced-scaffold na na JARDRF010000147.1 <> na Primary Assembly 1743 na contig_3771 unplaced-scaffold na na JARDRF010000148.1 <> na Primary Assembly 165944 na contig_3797 unplaced-scaffold na na JARDRF010000149.1 <> na Primary Assembly 55621 na contig_3852 unplaced-scaffold na na JARDRF010000150.1 <> na Primary Assembly 8590 na contig_3863 unplaced-scaffold na na JARDRF010000151.1 <> na Primary Assembly 14283 na contig_3876 unplaced-scaffold na na JARDRF010000152.1 <> na Primary Assembly 32244 na contig_3877 unplaced-scaffold na na JARDRF010000153.1 <> na Primary Assembly 22794 na contig_3892 unplaced-scaffold na na JARDRF010000154.1 <> na Primary Assembly 49372 na contig_3894 unplaced-scaffold na na JARDRF010000155.1 <> na Primary Assembly 28712 na contig_3896 unplaced-scaffold na na JARDRF010000156.1 <> na Primary Assembly 44931 na contig_3910_1_30756_+ unplaced-scaffold na na JARDRF010000157.1 <> na Primary Assembly 30771 na contig_399 unplaced-scaffold na na JARDRF010000158.1 <> na Primary Assembly 12162 na contig_4 unplaced-scaffold na na JARDRF010000043.1 <> na Primary Assembly 109296 na contig_4008 unplaced-scaffold na na JARDRF010000159.1 <> na Primary Assembly 34380 na contig_405 unplaced-scaffold na na JARDRF010000160.1 <> na Primary Assembly 58278 na contig_406 unplaced-scaffold na na JARDRF010000161.1 <> na Primary Assembly 40351 na contig_42 unplaced-scaffold na na JARDRF010000162.1 <> na Primary Assembly 37207 na contig_463_68227_76196_+ unplaced-scaffold na na JARDRF010000163.1 <> na Primary Assembly 7953 na contig_5 unplaced-scaffold na na JARDRF010000044.1 <> na Primary Assembly 186527 na contig_52 unplaced-scaffold na na JARDRF010000164.1 <> na Primary Assembly 122650 na contig_6 unplaced-scaffold na na JARDRF010000045.1 <> na Primary Assembly 94520 na contig_61 unplaced-scaffold na na JARDRF010000165.1 <> na Primary Assembly 114056 na contig_65 unplaced-scaffold na na JARDRF010000166.1 <> na Primary Assembly 65891 na contig_67 unplaced-scaffold na na JARDRF010000167.1 <> na Primary Assembly 8760 na contig_672 unplaced-scaffold na na JARDRF010000168.1 <> na Primary Assembly 4950 na contig_7 unplaced-scaffold na na JARDRF010000046.1 <> na Primary Assembly 54501 na contig_73 unplaced-scaffold na na JARDRF010000169.1 <> na Primary Assembly 18841 na contig_8 unplaced-scaffold na na JARDRF010000047.1 <> na Primary Assembly 51947 na contig_818 unplaced-scaffold na na JARDRF010000170.1 <> na Primary Assembly 4561 na contig_82 unplaced-scaffold na na JARDRF010000171.1 <> na Primary Assembly 7620 na contig_87 unplaced-scaffold na na JARDRF010000172.1 <> na Primary Assembly 8947 na contig_893_175008_206717_+ unplaced-scaffold na na JARDRF010000173.1 <> na Primary Assembly 31681 na contig_9 unplaced-scaffold na na JARDRF010000048.1 <> na Primary Assembly 101575 na contig_94 unplaced-scaffold na na JARDRF010000174.1 <> na Primary Assembly 1584 na contig_956 unplaced-scaffold na na JARDRF010000175.1 <> na Primary Assembly 6352 na