# Assembly name: CA611_1.0 # Organism name: Canis lupus familiaris (dog) # Infraspecific name: breed=Cairn Terrier # Isolate: CA611 # Sex: male # Taxid: 9615 # BioSample: SAMN31138973 # BioProject: PRJNA886700 # Submitter: University of Michigan # Date: 2023-08-31 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARDRD01 # Assembly method: Flye v. 2.3 # Expected final version: yes # Reference guided assembly: GCF_011100685.1 # Genome coverage: 21x # Sequencing technology: Illumina HiSeq; Oxford Nanopore PromethION # GenBank assembly accession: GCA_031010295.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_031010405.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM062001.1 <> na Primary Assembly 123022191 na chr2 assembled-molecule 2 Chromosome CM062002.1 <> na Primary Assembly 84199058 na chr3 assembled-molecule 3 Chromosome CM062003.1 <> na Primary Assembly 91996867 na chr4 assembled-molecule 4 Chromosome CM062004.1 <> na Primary Assembly 88759833 na chr5 assembled-molecule 5 Chromosome CM062005.1 <> na Primary Assembly 89289372 na chr6 assembled-molecule 6 Chromosome CM062006.1 <> na Primary Assembly 77747929 na chr7 assembled-molecule 7 Chromosome CM062007.1 <> na Primary Assembly 81025559 na chr8 assembled-molecule 8 Chromosome CM062008.1 <> na Primary Assembly 74965983 na chr9 assembled-molecule 9 Chromosome CM062009.1 <> na Primary Assembly 61078547 na chr10 assembled-molecule 10 Chromosome CM062010.1 <> na Primary Assembly 70604890 na chr11 assembled-molecule 11 Chromosome CM062011.1 <> na Primary Assembly 73989111 na chr12 assembled-molecule 12 Chromosome CM062012.1 <> na Primary Assembly 72669740 na chr13 assembled-molecule 13 Chromosome CM062013.1 <> na Primary Assembly 63649211 na chr14 assembled-molecule 14 Chromosome CM062014.1 <> na Primary Assembly 60918285 na chr15 assembled-molecule 15 Chromosome CM062015.1 <> na Primary Assembly 64360284 na chr16 assembled-molecule 16 Chromosome CM062016.1 <> na Primary Assembly 59469272 na chr17 assembled-molecule 17 Chromosome CM062017.1 <> na Primary Assembly 64332348 na chr18 assembled-molecule 18 Chromosome CM062018.1 <> na Primary Assembly 55924541 na chr19 assembled-molecule 19 Chromosome CM062019.1 <> na Primary Assembly 54469056 na chr20 assembled-molecule 20 Chromosome CM062020.1 <> na Primary Assembly 58301354 na chr21 assembled-molecule 21 Chromosome CM062021.1 <> na Primary Assembly 51075010 na chr22 assembled-molecule 22 Chromosome CM062022.1 <> na Primary Assembly 61455344 na chr23 assembled-molecule 23 Chromosome CM062023.1 <> na Primary Assembly 52860472 na chr24 assembled-molecule 24 Chromosome CM062024.1 <> na Primary Assembly 48088512 na chr25 assembled-molecule 25 Chromosome CM062025.1 <> na Primary Assembly 51682000 na chr26 assembled-molecule 26 Chromosome CM062026.1 <> na Primary Assembly 38489829 na chr27 assembled-molecule 27 Chromosome CM062027.1 <> na Primary Assembly 46366692 na chr28 assembled-molecule 28 Chromosome CM062028.1 <> na Primary Assembly 41275215 na chr29 assembled-molecule 29 Chromosome CM062029.1 <> na Primary Assembly 42070397 na chr30 assembled-molecule 30 Chromosome CM062030.1 <> na Primary Assembly 40391840 na chr31 assembled-molecule 31 Chromosome CM062031.1 <> na Primary Assembly 39654182 na chr32 assembled-molecule 32 Chromosome CM062032.1 <> na Primary Assembly 40053109 na chr33 assembled-molecule 33 Chromosome CM062033.1 <> na Primary Assembly 31689177 na chr34 assembled-molecule 34 Chromosome CM062034.1 <> na Primary Assembly 42362704 na chr35 assembled-molecule 35 Chromosome CM062035.1 <> na Primary Assembly 27309563 na chr36 assembled-molecule 36 Chromosome CM062036.1 <> na Primary Assembly 30999858 na chr37 assembled-molecule 37 Chromosome CM062037.1 <> na Primary Assembly 30887878 na chr38 assembled-molecule 38 Chromosome CM062038.1 <> na Primary Assembly 24506503 na chrX assembled-molecule X Chromosome CM062039.1 <> na Primary Assembly 123650312 na chrY assembled-molecule Y Chromosome CM062040.1 <> na Primary Assembly 3540084 na chrY_unpalced1 unlocalized-scaffold Y Chromosome JARDRD010000041.1 <> na Primary Assembly 1521396 na chrY_unpalced2 unlocalized-scaffold Y Chromosome JARDRD010000042.1 <> na Primary Assembly 617825 na contig_1 unplaced-scaffold na na JARDRD010000043.1 <> na Primary Assembly 142500 na contig_2 unplaced-scaffold na na JARDRD010000044.1 <> na Primary Assembly 110529 na contig_3 unplaced-scaffold na na JARDRD010000045.1 <> na Primary Assembly 97034 na contig_4 unplaced-scaffold na na JARDRD010000046.1 <> na Primary Assembly 58187 na contig_5 unplaced-scaffold na na JARDRD010000047.1 <> na Primary Assembly 39375 na contig_6 unplaced-scaffold na na JARDRD010000048.1 <> na Primary Assembly 90116 na contig_7 unplaced-scaffold na na JARDRD010000049.1 <> na Primary Assembly 78247 na contig_8 unplaced-scaffold na na JARDRD010000050.1 <> na Primary Assembly 11718 na contig_9 unplaced-scaffold na na JARDRD010000051.1 <> na Primary Assembly 26796 na contig_10 unplaced-scaffold na na JARDRD010000052.1 <> na Primary Assembly 178807 na contig_11 unplaced-scaffold na na JARDRD010000053.1 <> na Primary Assembly 17231 na contig_12 unplaced-scaffold na na JARDRD010000054.1 <> na Primary Assembly 89672 na contig_13 unplaced-scaffold na na JARDRD010000055.1 <> na Primary Assembly 2752 na contig_1022 unplaced-scaffold na na JARDRD010000056.1 <> na Primary Assembly 13982 na contig_1038 unplaced-scaffold na na JARDRD010000057.1 <> na Primary Assembly 1761 na contig_107_1_23111_+ unplaced-scaffold na na JARDRD010000058.1 <> na Primary Assembly 23099 na contig_1083 unplaced-scaffold na na JARDRD010000059.1 <> na Primary Assembly 16840 na contig_1087 unplaced-scaffold na na JARDRD010000060.1 <> na Primary Assembly 43252 na contig_1103 unplaced-scaffold na na JARDRD010000061.1 <> na Primary Assembly 17616 na contig_1105 unplaced-scaffold na na JARDRD010000062.1 <> na Primary Assembly 29446 na contig_1110 unplaced-scaffold na na JARDRD010000063.1 <> na Primary Assembly 1791 na contig_1115_42135988_42137872_+ unplaced-scaffold na na JARDRD010000064.1 <> na Primary Assembly 1889 na contig_1119_185097_211685_+ unplaced-scaffold na na JARDRD010000065.1 <> na Primary Assembly 26572 na contig_1141 unplaced-scaffold na na JARDRD010000066.1 <> na Primary Assembly 4540 na contig_1148 unplaced-scaffold na na JARDRD010000067.1 <> na Primary Assembly 34050 na contig_1150 unplaced-scaffold na na JARDRD010000068.1 <> na Primary Assembly 30666 na contig_1151 unplaced-scaffold na na JARDRD010000069.1 <> na Primary Assembly 39993 na contig_1152 unplaced-scaffold na na JARDRD010000070.1 <> na Primary Assembly 11726 na contig_1156 unplaced-scaffold na na JARDRD010000071.1 <> na Primary Assembly 50705 na contig_1182 unplaced-scaffold na na JARDRD010000072.1 <> na Primary Assembly 38431 na contig_1184 unplaced-scaffold na na JARDRD010000073.1 <> na Primary Assembly 65408 na contig_1194 unplaced-scaffold na na JARDRD010000074.1 <> na Primary Assembly 22664 na contig_1220_49248_53317_+ unplaced-scaffold na na JARDRD010000075.1 <> na Primary Assembly 4069 na contig_1277 unplaced-scaffold na na JARDRD010000076.1 <> na Primary Assembly 6166 na contig_1303 unplaced-scaffold na na JARDRD010000077.1 <> na Primary Assembly 35910 na contig_1322_51671_58390_+ unplaced-scaffold na na JARDRD010000078.1 <> na Primary Assembly 6726 na contig_1327 unplaced-scaffold na na JARDRD010000079.1 <> na Primary Assembly 1321 na contig_1343_28455_57336_+ unplaced-scaffold na na JARDRD010000080.1 <> na Primary Assembly 28980 na contig_1450_39808_45925_+ unplaced-scaffold na na JARDRD010000081.1 <> na Primary Assembly 6121 na contig_1561 unplaced-scaffold na na JARDRD010000082.1 <> na Primary Assembly 2318 na contig_1666 unplaced-scaffold na na JARDRD010000083.1 <> na Primary Assembly 4026 na contig_1707 unplaced-scaffold na na JARDRD010000084.1 <> na Primary Assembly 4954 na contig_1710 unplaced-scaffold na na JARDRD010000085.1 <> na Primary Assembly 1420 na contig_1743_34152_38321_+ unplaced-scaffold na na JARDRD010000086.1 <> na Primary Assembly 4172 na contig_1824 unplaced-scaffold na na JARDRD010000087.1 <> na Primary Assembly 1991 na contig_1829 unplaced-scaffold na na JARDRD010000088.1 <> na Primary Assembly 2459 na contig_1836 unplaced-scaffold na na JARDRD010000089.1 <> na Primary Assembly 12388 na contig_189 unplaced-scaffold na na JARDRD010000090.1 <> na Primary Assembly 55858 na contig_1894 unplaced-scaffold na na JARDRD010000091.1 <> na Primary Assembly 9078 na contig_1917 unplaced-scaffold na na JARDRD010000092.1 <> na Primary Assembly 1757 na contig_1931 unplaced-scaffold na na JARDRD010000093.1 <> na Primary Assembly 11268 na contig_1935 unplaced-scaffold na na JARDRD010000094.1 <> na Primary Assembly 9689 na contig_1940 unplaced-scaffold na na JARDRD010000095.1 <> na Primary Assembly 24444 na contig_1950 unplaced-scaffold na na JARDRD010000096.1 <> na Primary Assembly 9416 na contig_196 unplaced-scaffold na na JARDRD010000097.1 <> na Primary Assembly 9050 na contig_1964 unplaced-scaffold na na JARDRD010000098.1 <> na Primary Assembly 2444 na contig_1998 unplaced-scaffold na na JARDRD010000099.1 <> na Primary Assembly 4346 na contig_2004 unplaced-scaffold na na JARDRD010000100.1 <> na Primary Assembly 3963 na contig_201 unplaced-scaffold na na JARDRD010000101.1 <> na Primary Assembly 1617 na contig_2047_14453_21290_+ unplaced-scaffold na na JARDRD010000102.1 <> na Primary Assembly 6796 na contig_2054 unplaced-scaffold na na JARDRD010000103.1 <> na Primary Assembly 5202 na contig_2055 unplaced-scaffold na na JARDRD010000104.1 <> na Primary Assembly 6295 na contig_2090 unplaced-scaffold na na JARDRD010000105.1 <> na Primary Assembly 11629 na contig_209_1_16845_+ unplaced-scaffold na na JARDRD010000106.1 <> na Primary Assembly 16804 na contig_2116 unplaced-scaffold na na JARDRD010000107.1 <> na Primary Assembly 89897 na contig_2118 unplaced-scaffold na na JARDRD010000108.1 <> na Primary Assembly 9317 na contig_2127_53592_96567_+ unplaced-scaffold na na JARDRD010000109.1 <> na Primary Assembly 43013 na contig_2130 unplaced-scaffold na na JARDRD010000110.1 <> na Primary Assembly 8491 na contig_2132 unplaced-scaffold na na JARDRD010000111.1 <> na Primary Assembly 8395 na contig_2141 unplaced-scaffold na na JARDRD010000112.1 <> na Primary Assembly 9776 na contig_2171 unplaced-scaffold na na JARDRD010000113.1 <> na Primary Assembly 3102 na contig_2176 unplaced-scaffold na na JARDRD010000114.1 <> na Primary Assembly 42847 na contig_2209 unplaced-scaffold na na JARDRD010000115.1 <> na Primary Assembly 3730 na contig_2222 unplaced-scaffold na na JARDRD010000116.1 <> na Primary Assembly 4551 na contig_2230_6657074_6666253_+ unplaced-scaffold na na JARDRD010000117.1 <> na Primary Assembly 9155 na contig_2242 unplaced-scaffold na na JARDRD010000118.1 <> na Primary Assembly 60984 na contig_2301 unplaced-scaffold na na JARDRD010000119.1 <> na Primary Assembly 50718 na contig_2308 unplaced-scaffold na na JARDRD010000120.1 <> na Primary Assembly 45990 na contig_2318 unplaced-scaffold na na JARDRD010000121.1 <> na Primary Assembly 10352 na contig_2321 unplaced-scaffold na na JARDRD010000122.1 <> na Primary Assembly 164298 na contig_235 unplaced-scaffold na na JARDRD010000123.1 <> na Primary Assembly 1849 na contig_243 unplaced-scaffold na na JARDRD010000124.1 <> na Primary Assembly 1020 na contig_249 unplaced-scaffold na na JARDRD010000125.1 <> na Primary Assembly 2520 na contig_268 unplaced-scaffold na na JARDRD010000126.1 <> na Primary Assembly 11679 na contig_269 unplaced-scaffold na na JARDRD010000127.1 <> na Primary Assembly 28096 na contig_273 unplaced-scaffold na na JARDRD010000128.1 <> na Primary Assembly 18206 na contig_274 unplaced-scaffold na na JARDRD010000129.1 <> na Primary Assembly 873 na contig_439 unplaced-scaffold na na JARDRD010000130.1 <> na Primary Assembly 12191 na contig_443 unplaced-scaffold na na JARDRD010000131.1 <> na Primary Assembly 16383 na contig_448_23481_65114_+ unplaced-scaffold na na JARDRD010000132.1 <> na Primary Assembly 41478 na contig_712_78818_81574_+ unplaced-scaffold na na JARDRD010000133.1 <> na Primary Assembly 2758 na contig_753_105804_120805_+ unplaced-scaffold na na JARDRD010000134.1 <> na Primary Assembly 15007 na contig_889_186442_188041_+ unplaced-scaffold na na JARDRD010000135.1 <> na Primary Assembly 1599 na contig_889_445790_447211_+ unplaced-scaffold na na JARDRD010000136.1 <> na Primary Assembly 1422 na contig_897 unplaced-scaffold na na JARDRD010000137.1 <> na Primary Assembly 4450 na contig_905_10819_32049_+ unplaced-scaffold na na JARDRD010000138.1 <> na Primary Assembly 21229 na contig_961_52575_55687_+ unplaced-scaffold na na JARDRD010000139.1 <> na Primary Assembly 3113 na contig_970_1_9895_+ unplaced-scaffold na na JARDRD010000140.1 <> na Primary Assembly 9891 na contig_993 unplaced-scaffold na na JARDRD010000141.1 <> na Primary Assembly 2741 na