# Assembly name: bPoeAtr1.hap2 # Organism name: Poecile atricapillus (Black-capped chickadee) # Isolate: bPoeAtr1 # Sex: female # Taxid: 48891 # BioSample: SAMN35074507 # BioProject: PRJNA972430 # Submitter: Vertebrate Genomes Project # Date: 2023-07-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAUKOJ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1-r375; Bionano Solve v. 3.7; salsa v. 2.0 # Expected final version: no # Genome coverage: 40.0x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # GenBank assembly accession: GCA_030490855.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_030490875.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM059891.1 <> na Primary Assembly 180920413 na SUPER_2 assembled-molecule 2 Chromosome CM059892.1 <> na Primary Assembly 154828311 na SUPER_3 assembled-molecule 3 Chromosome CM059893.1 <> na Primary Assembly 117237321 na SUPER_4 assembled-molecule 4 Chromosome CM059894.1 <> na Primary Assembly 75865069 na SUPER_5 assembled-molecule 5 Chromosome CM059895.1 <> na Primary Assembly 44754785 na SUPER_6 assembled-molecule 6 Chromosome CM059896.1 <> na Primary Assembly 37917167 na SUPER_7 assembled-molecule 7 Chromosome CM059897.1 <> na Primary Assembly 33538978 na SUPER_8 assembled-molecule 8 Chromosome CM059898.1 <> na Primary Assembly 27969636 na SUPER_9 assembled-molecule 9 Chromosome CM059899.1 <> na Primary Assembly 24310477 na SUPER_10 assembled-molecule 10 Chromosome CM059900.1 <> na Primary Assembly 22404051 na SUPER_11 assembled-molecule 11 Chromosome CM059901.1 <> na Primary Assembly 20758036 na SUPER_12 assembled-molecule 12 Chromosome CM059902.1 <> na Primary Assembly 20752779 na SUPER_13 assembled-molecule 13 Chromosome CM059903.1 <> na Primary Assembly 18730890 na SUPER_14 assembled-molecule 14 Chromosome CM059904.1 <> na Primary Assembly 17703567 na SUPER_15 assembled-molecule 15 Chromosome CM059905.1 <> na Primary Assembly 16488554 na SUPER_16 assembled-molecule 16 Chromosome CM059906.1 <> na Primary Assembly 14697893 na SUPER_17 assembled-molecule 17 Chromosome CM059907.1 <> na Primary Assembly 11953164 na SUPER_18 assembled-molecule 18 Chromosome CM059908.1 <> na Primary Assembly 10298862 na SUPER_19 assembled-molecule 19 Chromosome CM059909.1 <> na Primary Assembly 12532119 na SUPER_20 assembled-molecule 20 Chromosome CM059910.1 <> na Primary Assembly 10704020 na SUPER_21 assembled-molecule 21 Chromosome CM059911.1 <> na Primary Assembly 11770040 na SUPER_22 assembled-molecule 22 Chromosome CM059912.1 <> na Primary Assembly 8538237 na SUPER_23 assembled-molecule 23 Chromosome CM059913.1 <> na Primary Assembly 7403655 na SUPER_24 assembled-molecule 24 Chromosome CM059914.1 <> na Primary Assembly 7169763 na SUPER_25 assembled-molecule 25 Chromosome CM059915.1 <> na Primary Assembly 8129997 na SUPER_26 assembled-molecule 26 Chromosome CM059916.1 <> na Primary Assembly 6131618 na SUPER_27 assembled-molecule 27 Chromosome CM059917.1 <> na Primary Assembly 6613000 na SUPER_28 assembled-molecule 28 Chromosome CM059918.1 <> na Primary Assembly 6558118 na SUPER_29 assembled-molecule 29 Chromosome CM059919.1 <> na Primary Assembly 5166554 na SUPER_30 assembled-molecule 30 Chromosome CM059920.1 <> na Primary Assembly 4864130 na SUPER_31 assembled-molecule 31 Chromosome CM059921.1 <> na Primary Assembly 4388526 na SUPER_32 assembled-molecule 32 Chromosome CM059922.1 <> na Primary Assembly 5540891 na SUPER_33 assembled-molecule 33 Chromosome CM059923.1 <> na Primary Assembly 4020752 na SUPER_34 assembled-molecule 34 Chromosome CM059924.1 <> na Primary Assembly 2904837 na SUPER_35 assembled-molecule 35 Chromosome CM059925.1 <> na Primary Assembly 3343341 na SUPER_36 assembled-molecule 36 Chromosome CM059926.1 <> na Primary Assembly 2006204 na SUPER_37 assembled-molecule 37 Chromosome CM059927.1 <> na Primary Assembly 2072140 na SUPER_38 assembled-molecule 38 Chromosome CM059928.1 <> na Primary Assembly 2191715 na SUPER_39 assembled-molecule 39 Chromosome CM059929.1 <> na Primary Assembly 1091424 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JAUKOJ010000002.1 <> na Primary Assembly 470961 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JAUKOJ010000005.1 <> na Primary Assembly 350524 na SUPER_22_unloc_1 unlocalized-scaffold 22 Chromosome JAUKOJ010000026.1 <> na Primary Assembly 146325 na SUPER_26_unloc_5 unlocalized-scaffold 26 Chromosome JAUKOJ010000031.1 <> na Primary Assembly 173837 na SUPER_26_unloc_7 unlocalized-scaffold 26 Chromosome JAUKOJ010000032.1 <> na Primary Assembly 72009 na SUPER_26_unloc_6 unlocalized-scaffold 26 Chromosome JAUKOJ010000033.1 <> na Primary Assembly 81504 na SUPER_26_unloc_4 unlocalized-scaffold 26 Chromosome JAUKOJ010000034.1 <> na Primary Assembly 177990 na SUPER_26_unloc_1 unlocalized-scaffold 26 Chromosome JAUKOJ010000035.1 <> na Primary Assembly 443143 na SUPER_26_unloc_2 unlocalized-scaffold 26 Chromosome JAUKOJ010000036.1 <> na Primary Assembly 303878 na SUPER_26_unloc_3 unlocalized-scaffold 26 Chromosome JAUKOJ010000037.1 <> na Primary Assembly 250262 na SUPER_29_unloc_2 unlocalized-scaffold 29 Chromosome JAUKOJ010000041.1 <> na Primary Assembly 226926 na SUPER_29_unloc_1 unlocalized-scaffold 29 Chromosome JAUKOJ010000042.1 <> na Primary Assembly 251249 na SUPER_30_unloc_4 unlocalized-scaffold 30 Chromosome JAUKOJ010000045.1 <> na Primary Assembly 211445 na SUPER_30_unloc_1 unlocalized-scaffold 30 Chromosome JAUKOJ010000046.1 <> na Primary Assembly 515892 na SUPER_30_unloc_2 unlocalized-scaffold 30 Chromosome JAUKOJ010000047.1 <> na Primary Assembly 266565 na SUPER_30_unloc_3 unlocalized-scaffold 30 Chromosome JAUKOJ010000048.1 <> na Primary Assembly 218902 na SUPER_30_unloc_5 unlocalized-scaffold 30 Chromosome JAUKOJ010000049.1 <> na Primary Assembly 113273 na SUPER_30_unloc_6 unlocalized-scaffold 30 Chromosome JAUKOJ010000050.1 <> na Primary Assembly 100859 na SUPER_30_unloc_7 unlocalized-scaffold 30 Chromosome JAUKOJ010000051.1 <> na Primary Assembly 84044 na SUPER_34_unloc_4 unlocalized-scaffold 34 Chromosome JAUKOJ010000061.1 <> na Primary Assembly 92111 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JAUKOJ010000062.1 <> na Primary Assembly 163550 na SUPER_34_unloc_2 unlocalized-scaffold 34 Chromosome JAUKOJ010000063.1 <> na Primary Assembly 120522 na SUPER_34_unloc_3 unlocalized-scaffold 34 Chromosome JAUKOJ010000064.1 <> na Primary Assembly 118485 na SUPER_34_unloc_5 unlocalized-scaffold 34 Chromosome JAUKOJ010000065.1 <> na Primary Assembly 74464 na SUPER_34_unloc_6 unlocalized-scaffold 34 Chromosome JAUKOJ010000066.1 <> na Primary Assembly 67324 na SUPER_34_unloc_7 unlocalized-scaffold 34 Chromosome JAUKOJ010000067.1 <> na Primary Assembly 49920 na SUPER_34_unloc_8 unlocalized-scaffold 34 Chromosome JAUKOJ010000068.1 <> na Primary Assembly 36194 na SUPER_35_unloc_1 unlocalized-scaffold 35 Chromosome JAUKOJ010000053.1 <> na Primary Assembly 160545 na SUPER_35_unloc_2 unlocalized-scaffold 35 Chromosome JAUKOJ010000054.1 <> na Primary Assembly 145654 na SUPER_35_unloc_3 unlocalized-scaffold 35 Chromosome JAUKOJ010000055.1 <> na Primary Assembly 109433 na SUPER_35_unloc_4 unlocalized-scaffold 35 Chromosome JAUKOJ010000056.1 <> na Primary Assembly 58631 na SUPER_35_unloc_5 unlocalized-scaffold 35 Chromosome JAUKOJ010000057.1 <> na Primary Assembly 38219 na SUPER_36_unloc_6 unlocalized-scaffold 36 Chromosome JAUKOJ010000078.1 <> na Primary Assembly 107470 na SUPER_36_unloc_9 unlocalized-scaffold 36 Chromosome JAUKOJ010000079.1 <> na Primary Assembly 69874 na SUPER_36_unloc_10 unlocalized-scaffold 36 Chromosome JAUKOJ010000080.1 <> na Primary Assembly 68833 na SUPER_36_unloc_11 unlocalized-scaffold 36 Chromosome JAUKOJ010000081.1 <> na Primary Assembly 68470 na SUPER_36_unloc_3 unlocalized-scaffold 36 Chromosome JAUKOJ010000082.1 <> na Primary Assembly 169849 na SUPER_36_unloc_4 unlocalized-scaffold 36 Chromosome JAUKOJ010000083.1 <> na Primary Assembly 125722 na SUPER_36_unloc_5 unlocalized-scaffold 36 Chromosome JAUKOJ010000084.1 <> na Primary Assembly 116507 na SUPER_36_unloc_1 unlocalized-scaffold 36 Chromosome JAUKOJ010000085.1 <> na Primary Assembly 195901 na SUPER_36_unloc_7 unlocalized-scaffold 36 Chromosome JAUKOJ010000086.1 <> na Primary Assembly 100169 na SUPER_36_unloc_8 unlocalized-scaffold 36 Chromosome JAUKOJ010000087.1 <> na Primary Assembly 77576 na SUPER_36_unloc_12 unlocalized-scaffold 36 Chromosome JAUKOJ010000088.1 <> na Primary Assembly 60809 na SUPER_36_unloc_2 unlocalized-scaffold 36 Chromosome JAUKOJ010000089.1 <> na Primary Assembly 171402 na SUPER_37_unloc_4 unlocalized-scaffold 37 Chromosome JAUKOJ010000070.1 <> na Primary Assembly 126574 na SUPER_37_unloc_6 unlocalized-scaffold 37 Chromosome JAUKOJ010000071.1 <> na Primary Assembly 94173 na SUPER_37_unloc_7 unlocalized-scaffold 37 Chromosome JAUKOJ010000072.1 <> na Primary Assembly 87222 na SUPER_37_unloc_1 unlocalized-scaffold 37 Chromosome JAUKOJ010000073.1 <> na Primary Assembly 328673 na SUPER_37_unloc_2 unlocalized-scaffold 37 Chromosome JAUKOJ010000074.1 <> na Primary Assembly 186488 na SUPER_37_unloc_3 unlocalized-scaffold 37 Chromosome JAUKOJ010000075.1 <> na Primary Assembly 170084 na SUPER_37_unloc_5 unlocalized-scaffold 37 Chromosome JAUKOJ010000076.1 <> na Primary Assembly 101509 na H1_scaffold_232 unplaced-scaffold na na JAUKOJ010000108.1 <> na Primary Assembly 56195 na H1_scaffold_271 unplaced-scaffold na na JAUKOJ010000117.1 <> na Primary Assembly 45170 na H1_scaffold_293 unplaced-scaffold na na JAUKOJ010000122.1 <> na Primary Assembly 40047 na scaffold_100 unplaced-scaffold na na JAUKOJ010000113.1 <> na Primary Assembly 47287 na scaffold_101 unplaced-scaffold na na JAUKOJ010000114.1 <> na Primary Assembly 46498 na scaffold_102 unplaced-scaffold na na JAUKOJ010000115.1 <> na Primary Assembly 46211 na scaffold_103 unplaced-scaffold na na JAUKOJ010000116.1 <> na Primary Assembly 45516 na scaffold_104 unplaced-scaffold na na JAUKOJ010000118.1 <> na Primary Assembly 44666 na scaffold_105 unplaced-scaffold na na JAUKOJ010000119.1 <> na Primary Assembly 41263 na scaffold_106 unplaced-scaffold na na JAUKOJ010000120.1 <> na Primary Assembly 41244 na scaffold_107 unplaced-scaffold na na JAUKOJ010000121.1 <> na Primary Assembly 40727 na scaffold_108 unplaced-scaffold na na JAUKOJ010000123.1 <> na Primary Assembly 38440 na scaffold_109 unplaced-scaffold na na JAUKOJ010000124.1 <> na Primary Assembly 38274 na scaffold_110 unplaced-scaffold na na JAUKOJ010000125.1 <> na Primary Assembly 38119 na scaffold_111 unplaced-scaffold na na JAUKOJ010000126.1 <> na Primary Assembly 37256 na scaffold_112 unplaced-scaffold na na JAUKOJ010000127.1 <> na Primary Assembly 36890 na scaffold_113 unplaced-scaffold na na JAUKOJ010000128.1 <> na Primary Assembly 36809 na scaffold_114 unplaced-scaffold na na JAUKOJ010000129.1 <> na Primary Assembly 36251 na scaffold_115 unplaced-scaffold na na JAUKOJ010000130.1 <> na Primary Assembly 35575 na scaffold_116 unplaced-scaffold na na JAUKOJ010000131.1 <> na Primary Assembly 35460 na scaffold_117 unplaced-scaffold na na JAUKOJ010000132.1 <> na Primary Assembly 34916 na scaffold_118 unplaced-scaffold na na JAUKOJ010000152.1 <> na Primary Assembly 34411 na scaffold_119 unplaced-scaffold na na JAUKOJ010000133.1 <> na Primary Assembly 34148 na scaffold_120 unplaced-scaffold na na JAUKOJ010000134.1 <> na Primary Assembly 34092 na scaffold_121 unplaced-scaffold na na JAUKOJ010000135.1 <> na Primary Assembly 33870 na scaffold_122 unplaced-scaffold na na JAUKOJ010000136.1 <> na Primary Assembly 33728 na scaffold_123 unplaced-scaffold na na JAUKOJ010000137.1 <> na Primary Assembly 33000 na scaffold_124 unplaced-scaffold na na JAUKOJ010000138.1 <> na Primary Assembly 31406 na scaffold_125 unplaced-scaffold na na JAUKOJ010000139.1 <> na Primary Assembly 30233 na scaffold_126 unplaced-scaffold na na JAUKOJ010000140.1 <> na Primary Assembly 27696 na scaffold_127 unplaced-scaffold na na JAUKOJ010000141.1 <> na Primary Assembly 26274 na scaffold_128 unplaced-scaffold na na JAUKOJ010000153.1 <> na Primary Assembly 24371 na scaffold_129 unplaced-scaffold na na JAUKOJ010000142.1 <> na Primary Assembly 22873 na scaffold_130 unplaced-scaffold na na JAUKOJ010000143.1 <> na Primary Assembly 22689 na scaffold_131 unplaced-scaffold na na JAUKOJ010000154.1 <> na Primary Assembly 20618 na scaffold_132 unplaced-scaffold na na JAUKOJ010000144.1 <> na Primary Assembly 20332 na scaffold_133 unplaced-scaffold na na JAUKOJ010000155.1 <> na Primary Assembly 19076 na scaffold_134 unplaced-scaffold na na JAUKOJ010000145.1 <> na Primary Assembly 18497 na scaffold_135 unplaced-scaffold na na JAUKOJ010000156.1 <> na Primary Assembly 14458 na scaffold_136 unplaced-scaffold na na JAUKOJ010000157.1 <> na Primary Assembly 3000 na scaffold_137 unplaced-scaffold na na JAUKOJ010000146.1 <> na Primary Assembly 3000 na scaffold_18 unplaced-scaffold na na JAUKOJ010000106.1 <> na Primary Assembly 58338 na scaffold_42 unplaced-scaffold na na JAUKOJ010000147.1 <> na Primary Assembly 1039587 na scaffold_51 unplaced-scaffold na na JAUKOJ010000151.1 <> na Primary Assembly 422547 na scaffold_54 unplaced-scaffold na na JAUKOJ010000091.1 <> na Primary Assembly 323381 na scaffold_55 unplaced-scaffold na na JAUKOJ010000148.1 <> na Primary Assembly 303295 na scaffold_60 unplaced-scaffold na na JAUKOJ010000092.1 <> na Primary Assembly 214692 na scaffold_61 unplaced-scaffold na na JAUKOJ010000093.1 <> na Primary Assembly 204000 na scaffold_63 unplaced-scaffold na na JAUKOJ010000149.1 <> na Primary Assembly 198816 na scaffold_65 unplaced-scaffold na na JAUKOJ010000150.1 <> na Primary Assembly 185307 na scaffold_66 unplaced-scaffold na na JAUKOJ010000094.1 <> na Primary Assembly 177000 na scaffold_72 unplaced-scaffold na na JAUKOJ010000097.1 <> na Primary Assembly 118618 na scaffold_76 unplaced-scaffold na na JAUKOJ010000098.1 <> na Primary Assembly 92611 na scaffold_77 unplaced-scaffold na na JAUKOJ010000099.1 <> na Primary Assembly 91616 na scaffold_80 unplaced-scaffold na na JAUKOJ010000100.1 <> na Primary Assembly 82040 na scaffold_82 unplaced-scaffold na na JAUKOJ010000101.1 <> na Primary Assembly 79369 na scaffold_84 unplaced-scaffold na na JAUKOJ010000095.1 <> na Primary Assembly 79000 na scaffold_85 unplaced-scaffold na na JAUKOJ010000102.1 <> na Primary Assembly 73000 na scaffold_87 unplaced-scaffold na na JAUKOJ010000096.1 <> na Primary Assembly 66000 na scaffold_88 unplaced-scaffold na na JAUKOJ010000103.1 <> na Primary Assembly 62704 na scaffold_89 unplaced-scaffold na na JAUKOJ010000104.1 <> na Primary Assembly 58949 na scaffold_90 unplaced-scaffold na na JAUKOJ010000105.1 <> na Primary Assembly 58384 na scaffold_91 unplaced-scaffold na na JAUKOJ010000107.1 <> na Primary Assembly 58071 na scaffold_93 unplaced-scaffold na na JAUKOJ010000109.1 <> na Primary Assembly 54519 na scaffold_94 unplaced-scaffold na na JAUKOJ010000110.1 <> na Primary Assembly 52851 na scaffold_95 unplaced-scaffold na na JAUKOJ010000111.1 <> na Primary Assembly 51000 na scaffold_96 unplaced-scaffold na na JAUKOJ010000112.1 <> na Primary Assembly 49119 na